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Items: 1 to 20 of 96

1.

Structural Defects of Laminin β3 N-terminus Underlie Junctional Epidermolysis Bullosa with Altered Granulation Tissue Response.

El Hachem M, Fortugno P, Palmeri A, Helmer Citterich M, Diociaiuti A, Proto V, Boldrini R, Zambruno G, Castiglia D.

Acta Derm Venereol. 2016 Apr 14. doi: 10.2340/00015555-2439. [Epub ahead of print]

2.

c-MYC inhibition impairs hypoxia response in glioblastoma multiforme.

Mongiardi MP, Savino M, Falchetti ML, Illi B, Bozzo F, Valle C, Helmer-Citterich M, Ferrè F, Nasi S, Levi A.

Oncotarget. 2016 Apr 22. doi: 10.18632/oncotarget.8921. [Epub ahead of print]

3.

Genome-wide methylation analysis demonstrates that 5-aza-2-deoxycytidine treatment does not cause random DNA demethylation in fragile X syndrome cells.

Tabolacci E, Mancano G, Lanni S, Palumbo F, Goracci M, Ferrè F, Helmer-Citterich M, Neri G.

Epigenetics Chromatin. 2016 Mar 24;9:12. doi: 10.1186/s13072-016-0060-x. eCollection 2016.

4.

Next Generation Sequencing and Linkage Analysis for the Molecular Diagnosis of a Novel Overlapping Syndrome Characterized by Hypertrophic Cardiomyopathy and Typical Electrical Instability of Brugada Syndrome.

Mango R, Luchetti A, Sangiuolo R, Ferradini V, Briglia N, Giardina E, Ferrè F, Helmer Citterich M, Romeo F, Novelli G, Sangiuolo F.

Circ J. 2016 Mar 25;80(4):938-49. doi: 10.1253/circj.CJ-15-0685. Epub 2016 Mar 9.

5.

The human rs1050286 polymorphism alters LOX-1 expression through modifying miR-24 binding.

Morini E, Rizzacasa B, Pucci S, Polidoro C, Ferrè F, Caporossi D, Helmer Citterich M, Novelli G, Amati F.

J Cell Mol Med. 2016 Jan;20(1):181-7. doi: 10.1111/jcmm.12716. Epub 2015 Nov 6.

6.

Tools and data services registry: a community effort to document bioinformatics resources.

Ison J, Rapacki K, Ménager H, Kalaš M, Rydza E, Chmura P, Anthon C, Beard N, Berka K, Bolser D, Booth T, Bretaudeau A, Brezovsky J, Casadio R, Cesareni G, Coppens F, Cornell M, Cuccuru G, Davidsen K, Vedova GD, Dogan T, Doppelt-Azeroual O, Emery L, Gasteiger E, Gatter T, Goldberg T, Grosjean M, Grüning B, Helmer-Citterich M, Ienasescu H, Ioannidis V, Jespersen MC, Jimenez R, Juty N, Juvan P, Koch M, Laibe C, Li JW, Licata L, Mareuil F, Mičetić I, Friborg RM, Moretti S, Morris C, Möller S, Nenadic A, Peterson H, Profiti G, Rice P, Romano P, Roncaglia P, Saidi R, Schafferhans A, Schwämmle V, Smith C, Sperotto MM, Stockinger H, Vařeková RS, Tosatto SC, de la Torre V, Uva P, Via A, Yachdav G, Zambelli F, Vriend G, Rost B, Parkinson H, Løngreen P, Brunak S.

Nucleic Acids Res. 2016 Jan 4;44(D1):D38-47. doi: 10.1093/nar/gkv1116. Epub 2015 Nov 3.

7.

Kinome-wide decoding of network-attacking mutations rewiring cancer signaling.

Creixell P, Schoof EM, Simpson CD, Longden J, Miller CJ, Lou HJ, Perryman L, Cox TR, Zivanovic N, Palmeri A, Wesolowska-Andersen A, Helmer-Citterich M, Ferkinghoff-Borg J, Itamochi H, Bodenmiller B, Erler JT, Turk BE, Linding R.

Cell. 2015 Sep 24;163(1):202-17. doi: 10.1016/j.cell.2015.08.056. Epub 2015 Sep 17.

8.

Preface: BITS2014, the annual meeting of the Italian Society of Bioinformatics.

Facchiano A, Angelini C, Bosotti R, Guffanti A, Marabotti A, Marangoni R, Pascarella S, Romano P, Zanzoni A, Helmer-Citterich M.

BMC Bioinformatics. 2015;16 Suppl 9:S1. doi: 10.1186/1471-2105-16-S9-S1. Epub 2015 Jun 1.

9.

Revealing protein-lncRNA interaction.

Ferrè F, Colantoni A, Helmer-Citterich M.

Brief Bioinform. 2016 Jan;17(1):106-16. doi: 10.1093/bib/bbv031. Epub 2015 Jun 2.

10.

Web-Beagle: a web server for the alignment of RNA secondary structures.

Mattei E, Pietrosanto M, Ferrè F, Helmer-Citterich M.

Nucleic Acids Res. 2015 Jul 1;43(W1):W493-7. doi: 10.1093/nar/gkv489. Epub 2015 May 14.

11.

AMBRA1 links autophagy to cell proliferation and tumorigenesis by promoting c-Myc dephosphorylation and degradation.

Cianfanelli V, Fuoco C, Lorente M, Salazar M, Quondamatteo F, Gherardini PF, De Zio D, Nazio F, Antonioli M, D'Orazio M, Skobo T, Bordi M, Rohde M, Dalla Valle L, Helmer-Citterich M, Gretzmeier C, Dengjel J, Fimia GM, Piacentini M, Di Bartolomeo S, Velasco G, Cecconi F.

Nat Cell Biol. 2015 May;17(5):706. doi: 10.1038/ncb3171. No abstract available.

PMID:
25925585
12.

A simple protocol for the inference of RNA global pairwise alignments.

Mattei E, Helmer-Citterich M, Ferrè F.

Methods Mol Biol. 2015;1269:39-47. doi: 10.1007/978-1-4939-2291-8_3.

PMID:
25577371
13.

AMBRA1 links autophagy to cell proliferation and tumorigenesis by promoting c-Myc dephosphorylation and degradation.

Cianfanelli V, Fuoco C, Lorente M, Salazar M, Quondamatteo F, Gherardini PF, De Zio D, Nazio F, Antonioli M, D'Orazio M, Skobo T, Bordi M, Rohde M, Dalla Valle L, Helmer-Citterich M, Gretzmeier C, Dengjel J, Fimia GM, Piacentini M, Di Bartolomeo S, Velasco G, Cecconi F.

Nat Cell Biol. 2015 Jan;17(1):20-30. doi: 10.1038/ncb3072. Epub 2014 Dec 1. Erratum in: Nat Cell Biol. 2015 May;17(5):706.

PMID:
25438055
14.

Exploiting holistic approaches to model specificity in protein phosphorylation.

Palmeri A, Ferrè F, Helmer-Citterich M.

Front Genet. 2014 Sep 30;5:315. doi: 10.3389/fgene.2014.00315. eCollection 2014. Review.

15.

Computational methods for analysis and inference of kinase/inhibitor relationships.

Ferrè F, Palmeri A, Helmer-Citterich M.

Front Genet. 2014 Jun 30;5:196. doi: 10.3389/fgene.2014.00196. eCollection 2014. Review.

16.

A proteome-wide Domain-centric Perspective on Protein Phosphorylation.

Palmeri A, Ausiello G, Ferre F, Helmer-Citterich M, Gherardini PF.

Mol Cell Proteomics. 2014 May 15. pii: mcp.M114.039990. [Epub ahead of print]

17.

A novel approach to represent and compare RNA secondary structures.

Mattei E, Ausiello G, Ferrè F, Helmer-Citterich M.

Nucleic Acids Res. 2014 Jun;42(10):6146-57. doi: 10.1093/nar/gku283. Epub 2014 Apr 21.

18.

Regulation dynamics of Leishmania differentiation: deconvoluting signals and identifying phosphorylation trends.

Tsigankov P, Gherardini PF, Helmer-Citterich M, Späth GF, Myler PJ, Zilberstein D.

Mol Cell Proteomics. 2014 Jul;13(7):1787-99. doi: 10.1074/mcp.M114.037705. Epub 2014 Apr 16.

19.

Role of CTCF protein in regulating FMR1 locus transcription.

Lanni S, Goracci M, Borrelli L, Mancano G, Chiurazzi P, Moscato U, Ferrè F, Helmer-Citterich M, Tabolacci E, Neri G.

PLoS Genet. 2013;9(7):e1003601. doi: 10.1371/journal.pgen.1003601. Epub 2013 Jul 18.

20.

Bioinformatics in Italy: BITS 2012, the ninth annual meeting of the Italian Society of Bioinformatics.

Gissi C, Romano P, Ferro A, Giugno R, Pulvirenti A, Facchiano A, Helmer-Citterich M.

BMC Bioinformatics. 2013;14 Suppl 7:S1. doi: 10.1186/1471-2105-14-S7-S1. Epub 2013 Apr 22.

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