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Results: 10

1.

SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools.

Chaouiya C, Bérenguier D, Keating SM, Naldi A, van Iersel MP, Rodriguez N, Dräger A, Büchel F, Cokelaer T, Kowal B, Wicks B, Gonçalves E, Dorier J, Page M, Monteiro PT, von Kamp A, Xenarios I, de Jong H, Hucka M, Klamt S, Thieffry D, Le Novère N, Saez-Rodriguez J, Helikar T.

BMC Syst Biol. 2013 Dec 10;7:135. doi: 10.1186/1752-0509-7-135.

PMID:
24321545
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Molecular phylogeny and evolutionary dynamics of influenza A nonstructural (NS) gene.

Xu J, Zhong HA, Madrahimov A, Helikar T, Lu G.

Infect Genet Evol. 2014 Mar;22:192-200. doi: 10.1016/j.meegid.2013.10.011. Epub 2013 Oct 22.

PMID:
24161299
[PubMed - in process]
3.

A comprehensive, multi-scale dynamical model of ErbB receptor signal transduction in human mammary epithelial cells.

Helikar T, Kochi N, Kowal B, Dimri M, Naramura M, Raja SM, Band V, Band H, Rogers JA.

PLoS One. 2013 Apr 18;8(4):e61757. doi: 10.1371/journal.pone.0061757. Print 2013.

PMID:
23637902
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

A cell simulator platform: the cell collective.

Helikar T, Kowal B, Rogers JA.

Clin Pharmacol Ther. 2013 May;93(5):393-5. doi: 10.1038/clpt.2013.41. Epub 2013 Feb 20.

PMID:
23549147
[PubMed - indexed for MEDLINE]
5.

Bio-logic builder: a non-technical tool for building dynamical, qualitative models.

Helikar T, Kowal B, Madrahimov A, Shrestha M, Pedersen J, Limbu K, Thapa I, Rowley T, Satalkar R, Kochi N, Konvalina J, Rogers JA.

PLoS One. 2012;7(10):e46417. doi: 10.1371/journal.pone.0046417. Epub 2012 Oct 17.

PMID:
23082121
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Dynamics of influenza virus and human host interactions during infection and replication cycle.

Madrahimov A, Helikar T, Kowal B, Lu G, Rogers J.

Bull Math Biol. 2013 Jun;75(6):988-1011. doi: 10.1007/s11538-012-9777-2. Epub 2012 Oct 19.

PMID:
23081726
[PubMed - indexed for MEDLINE]
7.

Ergodic sets as cell phenotype of budding yeast cell cycle.

Todd RG, Helikar T.

PLoS One. 2012;7(10):e45780. doi: 10.1371/journal.pone.0045780. Epub 2012 Oct 1.

PMID:
23049686
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

The Cell Collective: toward an open and collaborative approach to systems biology.

Helikar T, Kowal B, McClenathan S, Bruckner M, Rowley T, Madrahimov A, Wicks B, Shrestha M, Limbu K, Rogers JA.

BMC Syst Biol. 2012 Aug 7;6:96. doi: 10.1186/1752-0509-6-96.

PMID:
22871178
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

ChemChains: a platform for simulation and analysis of biochemical networks aimed to laboratory scientists.

Helikar T, Rogers JA.

BMC Syst Biol. 2009 Jun 6;3:58. doi: 10.1186/1752-0509-3-58.

PMID:
19500393
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Emergent decision-making in biological signal transduction networks.

Helikar T, Konvalina J, Heidel J, Rogers JA.

Proc Natl Acad Sci U S A. 2008 Feb 12;105(6):1913-8. doi: 10.1073/pnas.0705088105. Epub 2008 Feb 4.

PMID:
18250321
[PubMed - indexed for MEDLINE]
Free PMC Article

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