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Detoxifying Escherichia coli for endotoxin-free production of recombinant proteins.

Mamat U, Wilke K, Bramhill D, Schromm AB, Lindner B, Kohl TA, Corchero JL, Villaverde A, Schaffer L, Head SR, Souvignier C, Meredith TC, Woodard RW.

Microb Cell Fact. 2015 Apr 16;14(1):57. doi: 10.1186/s12934-015-0241-5.


IP3 3-kinase B controls hematopoietic stem cell homeostasis and prevents lethal hematopoietic failure in mice.

Siegemund S, Rigaud S, Conche C, Broaten B, Schaffer L, Westernberg L, Head SR, Sauer K.

Blood. 2015 Apr 30;125(18):2786-97. doi: 10.1182/blood-2014-06-583187. Epub 2015 Mar 18.


A novel histone deacetylase complex in the control of transcription and genome stability.

Zilio N, Codlin S, Vashisht AA, Bitton DA, Head SR, Wohlschlegel JA, Bähler J, Boddy MN.

Mol Cell Biol. 2014 Sep 15;34(18):3500-14. doi: 10.1128/MCB.00519-14. Epub 2014 Jul 7.


Molecular classifiers for acute kidney transplant rejection in peripheral blood by whole genome gene expression profiling.

Kurian SM, Williams AN, Gelbart T, Campbell D, Mondala TS, Head SR, Horvath S, Gaber L, Thompson R, Whisenant T, Lin W, Langfelder P, Robison EH, Schaffer RL, Fisher JS, Friedewald J, Flechner SM, Chan LK, Wiseman AC, Shidban H, Mendez R, Heilman R, Abecassis MM, Marsh CL, Salomon DR.

Am J Transplant. 2014 May;14(5):1164-72. doi: 10.1111/ajt.12671. Epub 2014 Apr 11.


An evolutionarily conserved long noncoding RNA TUNA controls pluripotency and neural lineage commitment.

Lin N, Chang KY, Li Z, Gates K, Rana ZA, Dang J, Zhang D, Han T, Yang CS, Cunningham TJ, Head SR, Duester G, Dong PD, Rana TM.

Mol Cell. 2014 Mar 20;53(6):1005-19. doi: 10.1016/j.molcel.2014.01.021. Epub 2014 Feb 13. Erratum in: Mol Cell. 2014 Mar 20;53(6):1067.


Library construction for next-generation sequencing: overviews and challenges.

Head SR, Komori HK, LaMere SA, Whisenant T, Van Nieuwerburgh F, Salomon DR, Ordoukhanian P.

Biotechniques. 2014 Feb 1;56(2):61-4, 66, 68, passim. doi: 10.2144/000114133. eCollection 2014. Review.


Technical variations in low-input RNA-seq methodologies.

Bhargava V, Head SR, Ordoukhanian P, Mercola M, Subramaniam S.

Sci Rep. 2014 Jan 14;4:3678. doi: 10.1038/srep03678.


The long noncoding RNA THRIL regulates TNFα expression through its interaction with hnRNPL.

Li Z, Chao TC, Chang KY, Lin N, Patil VS, Shimizu C, Head SR, Burns JC, Rana TM.

Proc Natl Acad Sci U S A. 2014 Jan 21;111(3):1002-7. doi: 10.1073/pnas.1313768111. Epub 2013 Dec 26.


Differential transcriptome analysis of glandular and filamentous trichomes in Artemisia annua.

Soetaert SS, Van Neste CM, Vandewoestyne ML, Head SR, Goossens A, Van Nieuwerburgh FC, Deforce DL.

BMC Plant Biol. 2013 Dec 20;13:220. doi: 10.1186/1471-2229-13-220.


Optimization of peptide arrays for studying antibodies to hepatitis C virus continuous epitopes.

Ruwona TB, Mcbride R, Chappel R, Head SR, Ordoukhanian P, Burton DR, Law M.

J Immunol Methods. 2014 Jan 15;402(1-2):35-42. doi: 10.1016/j.jim.2013.11.005. Epub 2013 Nov 19.


VHL-dependent regulation of a β-dystroglycan glycoform and glycogene expression in renal cancer.

Aggelis V, Craven RA, Peng J, Harnden P, Schaffer L, Hernandez GE, Head SR, Maher ER, Tonge R, Selby PJ, Banks RE.

Int J Oncol. 2013 Nov;43(5):1368-76. doi: 10.3892/ijo.2013.2066. Epub 2013 Aug 21.


RNA purification and expression analysis using microarrays and RNA deep sequencing.

Head SR, Mondala T, Gelbart T, Ordoukhanian P, Chappel R, Hernandez G, Salomon DR.

Methods Mol Biol. 2013;1034:385-403. doi: 10.1007/978-1-62703-493-7_25.


Genomic meta-analysis of growth factor and integrin pathways in chronic kidney transplant injury.

Dosanjh A, Robison E, Mondala T, Head SR, Salomon DR, Kurian SM.

BMC Genomics. 2013 Apr 23;14:275. doi: 10.1186/1471-2164-14-275.


Noncoding transcription within the Igh distal V(H) region at PAIR elements affects the 3D structure of the Igh locus in pro-B cells.

Verma-Gaur J, Torkamani A, Schaffer L, Head SR, Schork NJ, Feeney AJ.

Proc Natl Acad Sci U S A. 2012 Oct 16;109(42):17004-9. doi: 10.1073/pnas.1208398109. Epub 2012 Oct 1.


Expression of glycogenes in differentiating human NT2N neurons. Downregulation of fucosyltransferase 9 leads to decreased Lewis(x) levels and impaired neurite outgrowth.

Gouveia R, Schaffer L, Papp S, Grammel N, Kandzia S, Head SR, Kleene R, Schachner M, Conradt HS, Costa J.

Biochim Biophys Acta. 2012 Dec;1820(12):2007-19. doi: 10.1016/j.bbagen.2012.09.004. Epub 2012 Sep 19.


Glycophenotypic alterations induced by Pteridium aquilinum in mice gastric mucosa: synergistic effect with Helicobacter pylori infection.

Gomes J, Magalhães A, Carvalho AS, Hernandez GE, Papp SL, Head SR, Michel V, David L, Gärtner F, Touati E, Reis CA.

PLoS One. 2012;7(6):e38353. doi: 10.1371/journal.pone.0038353. Epub 2012 Jun 13.


Illumina mate-paired DNA sequencing-library preparation using Cre-Lox recombination.

Van Nieuwerburgh F, Thompson RC, Ledesma J, Deforce D, Gaasterland T, Ordoukhanian P, Head SR.

Nucleic Acids Res. 2012 Feb;40(3):e24. doi: 10.1093/nar/gkr1000. Epub 2011 Nov 29.


Quantitative bias in Illumina TruSeq and a novel post amplification barcoding strategy for multiplexed DNA and small RNA deep sequencing.

Van Nieuwerburgh F, Soetaert S, Podshivalova K, Ay-Lin Wang E, Schaffer L, Deforce D, Salomon DR, Head SR, Ordoukhanian P.

PLoS One. 2011;6(10):e26969. doi: 10.1371/journal.pone.0026969. Epub 2011 Oct 28.


Genome-wide identification of Bcl11b gene targets reveals role in brain-derived neurotrophic factor signaling.

Tang B, Di Lena P, Schaffer L, Head SR, Baldi P, Thomas EA.

PLoS One. 2011;6(9):e23691. doi: 10.1371/journal.pone.0023691. Epub 2011 Sep 1.


MicroRNA regulation of molecular networks mapped by global microRNA, mRNA, and protein expression in activated T lymphocytes.

Grigoryev YA, Kurian SM, Hart T, Nakorchevsky AA, Chen C, Campbell D, Head SR, Yates JR 3rd, Salomon DR.

J Immunol. 2011 Sep 1;187(5):2233-43. doi: 10.4049/jimmunol.1101233. Epub 2011 Jul 25.

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