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Items: 1 to 20 of 560

1.

Functional annotation of the vlinc class of non-coding RNAs using systems biology approach.

Laurent GS, Vyatkin Y, Antonets D, Ri M, Qi Y, Saik O, Shtokalo D, de Hoon MJ, Kawaji H, Itoh M, Lassmann T, Arner E, Forrest AR; FANTOM consortium, Nicolas E, McCaffrey TA, Carninci P, Hayashizaki Y, Wahlestedt C, Kapranov P.

Nucleic Acids Res. 2016 Apr 20;44(7):3233-52. doi: 10.1093/nar/gkw162. Epub 2016 Mar 21.

2.

Edesign: Primer and Enhanced Internal Probe Design Tool for Quantitative PCR Experiments and Genotyping Assays.

Kimura Y, Soma T, Kasahara N, Delobel D, Hanami T, Tanaka Y, de Hoon MJ, Hayashizaki Y, Usui K, Harbers M.

PLoS One. 2016 Feb 10;11(2):e0146950. doi: 10.1371/journal.pone.0146950. eCollection 2016. Erratum in: PLoS One. 2016;11(3):e0152713.

3.

Effect of ipragliflozin, an SGLT2 inhibitor, on progression of diabetic microvascular complications in spontaneously diabetic Torii fatty rats.

Takakura S, Toyoshi T, Hayashizaki Y, Takasu T.

Life Sci. 2016 Feb 15;147:125-31. doi: 10.1016/j.lfs.2016.01.042. Epub 2016 Jan 29.

PMID:
26829386
4.

Enhanced Identification of Transcriptional Enhancers Provides Mechanistic Insights into Diseases.

Murakawa Y, Yoshihara M, Kawaji H, Nishikawa M, Zayed H, Suzuki H, Fantom Consortium, Hayashizaki Y.

Trends Genet. 2016 Feb;32(2):76-88. doi: 10.1016/j.tig.2015.11.004. Epub 2016 Jan 15. Review.

PMID:
26780995
5.

A predictive computational framework for direct reprogramming between human cell types.

Rackham OJ, Firas J, Fang H, Oates ME, Holmes ML, Knaupp AS; FANTOM Consortium, Suzuki H, Nefzger CM, Daub CO, Shin JW, Petretto E, Forrest AR, Hayashizaki Y, Polo JM, Gough J.

Nat Genet. 2016 Mar;48(3):331-5. doi: 10.1038/ng.3487. Epub 2016 Jan 18.

PMID:
26780608
6.

Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation.

Fraser J, Ferrai C, Chiariello AM, Schueler M, Rito T, Laudanno G, Barbieri M, Moore BL, Kraemer DC, Aitken S, Xie SQ, Morris KJ, Itoh M, Kawaji H, Jaeger I, Hayashizaki Y, Carninci P, Forrest AR; FANTOM Consortium, Semple CA, Dostie J, Pombo A, Nicodemi M.

Mol Syst Biol. 2015 Dec 23;11(12):852. doi: 10.15252/msb.20156492.

7.

Application of Gene Expression Trajectories Initiated from ErbB Receptor Activation Highlights the Dynamics of Divergent Promoter Usage.

Carbajo D, Magi S, Itoh M, Kawaji H, Lassmann T, Arner E, Forrest AR, Carninci P, Hayashizaki Y, Daub CO; FANTOM consortium, Okada-Hatakeyama M, Mar JC.

PLoS One. 2015 Dec 14;10(12):e0144176. doi: 10.1371/journal.pone.0144176. eCollection 2015.

8.

Corrigendum: TET2 repression by androgen hormone regulates global hydroxymethylation status and prostate cancer progression.

Takayama K, Misawa A, Suzuki T, Takagi K, Hayashizaki Y, Fujimura T, Homma Y, Takahashi S, Urano T, Inoue S.

Nat Commun. 2015 Dec 14;6:10265. doi: 10.1038/ncomms10265. No abstract available.

PMID:
26655830
9.

Mapping Mammalian Cell-type-specific Transcriptional Regulatory Networks Using KD-CAGE and ChIP-seq Data in the TC-YIK Cell Line.

Lizio M, Ishizu Y, Itoh M, Lassmann T, Hasegawa A, Kubosaki A, Severin J, Kawaji H, Nakamura Y; FANTOM consortium, Suzuki H, Hayashizaki Y, Carninci P, Forrest AR.

Front Genet. 2015 Nov 18;6:331. doi: 10.3389/fgene.2015.00331. eCollection 2015.

10.

An autopsy case of death due to metabolic acidosis after citric acid ingestion.

Ikeda T, Usui A, Matsumura T, Aramaki T, Hosoya T, Igari Y, Ohuchi T, Hayashizaki Y, Usui K, Funayama M.

Leg Med (Tokyo). 2015 Nov;17(6):532-4. doi: 10.1016/j.legalmed.2015.10.009. Epub 2015 Oct 28.

PMID:
26594004
11.

Transcriptome Analysis of Recurrently Deregulated Genes across Multiple Cancers Identifies New Pan-Cancer Biomarkers.

Kaczkowski B, Tanaka Y, Kawaji H, Sandelin A, Andersson R, Itoh M, Lassmann T, Hayashizaki Y, Carninci P, Forrest AR; FANTOM5 consortium.

Cancer Res. 2016 Jan 15;76(2):216-26. doi: 10.1158/0008-5472.CAN-15-0484. Epub 2015 Nov 9.

PMID:
26552699
12.

DeepCAGE Transcriptomics Reveal an Important Role of the Transcription Factor MAFB in the Lymphatic Endothelium.

Dieterich LC, Klein S, Mathelier A, Sliwa-Primorac A, Ma Q, Hong YK, Shin JW, Hamada M, Lizio M, Itoh M, Kawaji H, Lassmann T, Daub CO, Arner E, Carninci P, Hayashizaki Y, Forrest AR, Wasserman WW, Detmar M.

Cell Rep. 2015 Nov 17;13(7):1493-504. doi: 10.1016/j.celrep.2015.10.002. Epub 2015 Nov 5.

13.

TET2 repression by androgen hormone regulates global hydroxymethylation status and prostate cancer progression.

Takayama K, Misawa A, Suzuki T, Takagi K, Hayashizaki Y, Fujimura T, Homma Y, Takahashi S, Urano T, Inoue S.

Nat Commun. 2015 Sep 25;6:8219. doi: 10.1038/ncomms9219. Erratum in: Nat Commun. 2015;6:10265.

PMID:
26404510
14.

The frequent evolutionary birth and death of functional promoters in mouse and human.

Young RS, Hayashizaki Y, Andersson R, Sandelin A, Kawaji H, Itoh M, Lassmann T, Carninci P; FANTOM Consortium, Bickmore WA, Forrest AR, Taylor MS.

Genome Res. 2015 Oct;25(10):1546-57. doi: 10.1101/gr.190546.115. Epub 2015 Jul 30.

15.

Promoter-level expression clustering identifies time development of transcriptional regulatory cascades initiated by ErbB receptors in breast cancer cells.

Mina M, Magi S, Jurman G, Itoh M, Kawaji H, Lassmann T, Arner E, Forrest AR, Carninci P, Hayashizaki Y, Daub CO; FANTOM Consortium, Okada-Hatakeyama M, Furlanello C.

Sci Rep. 2015 Jul 16;5:11999. doi: 10.1038/srep11999.

16.

Distinction between saltwater drowning and freshwater drowning by assessment of sinus fluid on post-mortem computed tomography.

Kawasumi Y, Usui A, Sato Y, Sato Y, Daigaku N, Hosokai Y, Hayashizaki Y, Funayama M, Ishibashi T.

Eur Radiol. 2016 Apr;26(4):1186-90. doi: 10.1007/s00330-015-3909-7. Epub 2015 Jul 11.

PMID:
26162581
17.

Redefining the transcriptional regulatory dynamics of classically and alternatively activated macrophages by deepCAGE transcriptomics.

Roy S, Schmeier S, Arner E, Alam T, Parihar SP, Ozturk M, Tamgue O, Kawaji H, de Hoon MJ, Itoh M, Lassmann T, Carninci P, Hayashizaki Y, Forrest AR, Bajic VB, Guler R; Fantom Consortium, Brombacher F, Suzuki H.

Nucleic Acids Res. 2015 Aug 18;43(14):6969-82. doi: 10.1093/nar/gkv646. Epub 2015 Jun 27.

18.

Complementing tissue characterization by integrating transcriptome profiling from the Human Protein Atlas and from the FANTOM5 consortium.

Yu NY, Hallström BM, Fagerberg L, Ponten F, Kawaji H, Carninci P, Forrest AR; Fantom Consortium, Hayashizaki Y, Uhlén M, Daub CO.

Nucleic Acids Res. 2015 Aug 18;43(14):6787-98. doi: 10.1093/nar/gkv608. Epub 2015 Jun 27.

19.

Correction: discovery of molecular markers to discriminate corneal endothelial cells in the human body.

Yoshihara M, Ohmiya H, Hara S, Kawasaki S; FANTOM consortium, Hayashizaki Y, Itoh M, Kawaji H, Tsujikawa M, Nishida K.

PLoS One. 2015 May 26;10(5):e0129412. doi: 10.1371/journal.pone.0129412. eCollection 2015. No abstract available.

20.

Batf2/Irf1 induces inflammatory responses in classically activated macrophages, lipopolysaccharides, and mycobacterial infection.

Roy S, Guler R, Parihar SP, Schmeier S, Kaczkowski B, Nishimura H, Shin JW, Negishi Y, Ozturk M, Hurdayal R, Kubosaki A, Kimura Y, de Hoon MJ, Hayashizaki Y, Brombacher F, Suzuki H.

J Immunol. 2015 Jun 15;194(12):6035-44. doi: 10.4049/jimmunol.1402521. Epub 2015 May 8.

PMID:
25957166
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