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Results: 1 to 20 of 48

1.

Integrated metagenomics and metatranscriptomics analyses of root-associated soil from transgenic switchgrass.

Chauhan A, Smartt A, Wang J, Utturkar S, Frank A, Bi M, Liu J, Williams D, Xu T, Eldridge M, Arreaza A, Rogers A, Gonzalez HC, Layton AC, Baxter HL, Mazarei M, DeBruyn JM, Stewart CN Jr, Brown SD, Hauser LJ, Sayler GS.

Genome Announc. 2014 Aug 14;2(4). pii: e00777-14. doi: 10.1128/genomeA.00777-14.

PMID:
25125642
[PubMed]
Free PMC Article
2.

Genome Sequence and Methylome of Soil Bacterium Gemmatirosa kalamazoonensis KBS708T, a Member of the Rarely Cultivated Gemmatimonadetes Phylum.

Debruyn JM, Radosevich M, Wommack KE, Polson SW, Hauser LJ, Fawaz MN, Korlach J, Tsai YC.

Genome Announc. 2014 Apr 3;2(2). pii: e00226-14. doi: 10.1128/genomeA.00226-14.

PMID:
24699952
[PubMed]
Free PMC Article
3.

Complete genome sequence of Granulicella mallensis type strain MP5ACTX8(T), an acidobacterium from tundra soil.

Rawat SR, Männistö MK, Starovoytov V, Goodwin L, Nolan M, Hauser LJ, Land M, Davenport KW, Woyke T, Häggblom MM.

Stand Genomic Sci. 2013 Sep 30;9(1):71-82. doi: 10.4056/sigs.4328031. eCollection 2013 Oct 16.

PMID:
24501646
[PubMed]
Free PMC Article
4.

Global transcriptome analysis of Clostridium thermocellum ATCC 27405 during growth on dilute acid pretreated Populus and switchgrass.

Wilson CM, Rodriguez M Jr, Johnson CM, Martin SL, Chu TM, Wolfinger RD, Hauser LJ, Land ML, Klingeman DM, Syed MH, Ragauskas AJ, Tschaplinski TJ, Mielenz JR, Brown SD.

Biotechnol Biofuels. 2013 Dec 2;6(1):179. doi: 10.1186/1754-6834-6-179.

PMID:
24295562
[PubMed]
Free PMC Article
5.

Genome analysis and physiological comparison of Alicycliphilus denitrificans strains BC and K601(T.).

Oosterkamp MJ, Veuskens T, Talarico Saia F, Weelink SA, Goodwin LA, Daligault HE, Bruce DC, Detter JC, Tapia R, Han CS, Land ML, Hauser LJ, Langenhoff AA, Gerritse J, van Berkel WJ, Pieper DH, Junca H, Smidt H, Schraa G, Davids M, Schaap PJ, Plugge CM, Stams AJ.

PLoS One. 2013 Jun 25;8(6):e66971. doi: 10.1371/journal.pone.0066971. Print 2013.

PMID:
23825601
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park.

Mead DA, Lucas S, Copeland A, Lapidus A, Cheng JF, Bruce DC, Goodwin LA, Pitluck S, Chertkov O, Zhang X, Detter JC, Han CS, Tapia R, Land M, Hauser LJ, Chang YJ, Kyrpides NC, Ivanova NN, Ovchinnikova G, Woyke T, Brumm C, Hochstein R, Schoenfeld T, Brumm P.

Stand Genomic Sci. 2012 Jul 30;6(3):381-400. doi: 10.4056/sigs.2605792. Epub 2012 Jul 27.

PMID:
23408395
[PubMed]
Free PMC Article
7.

Comparative metagenomics of toxic freshwater cyanobacteria bloom communities on two continents.

Steffen MM, Li Z, Effler TC, Hauser LJ, Boyer GL, Wilhelm SW.

PLoS One. 2012;7(8):e44002. doi: 10.1371/journal.pone.0044002. Epub 2012 Aug 29.

PMID:
22952848
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Gene and translation initiation site prediction in metagenomic sequences.

Hyatt D, LoCascio PF, Hauser LJ, Uberbacher EC.

Bioinformatics. 2012 Sep 1;28(17):2223-30. doi: 10.1093/bioinformatics/bts429. Epub 2012 Jul 12.

PMID:
22796954
[PubMed - indexed for MEDLINE]
Free Article
9.

Caldicellulosiruptor core and pangenomes reveal determinants for noncellulosomal thermophilic deconstruction of plant biomass.

Blumer-Schuette SE, Giannone RJ, Zurawski JV, Ozdemir I, Ma Q, Yin Y, Xu Y, Kataeva I, Poole FL 2nd, Adams MW, Hamilton-Brehm SD, Elkins JG, Larimer FW, Land ML, Hauser LJ, Cottingham RW, Hettich RL, Kelly RM.

J Bacteriol. 2012 Aug;194(15):4015-28. doi: 10.1128/JB.00266-12. Epub 2012 May 25.

PMID:
22636774
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Complete genome of the cellulolytic ruminal bacterium Ruminococcus albus 7.

Suen G, Stevenson DM, Bruce DC, Chertkov O, Copeland A, Cheng JF, Detter C, Detter JC, Goodwin LA, Han CS, Hauser LJ, Ivanova NN, Kyrpides NC, Land ML, Lapidus A, Lucas S, Ovchinnikova G, Pitluck S, Tapia R, Woyke T, Boyum J, Mead D, Weimer PJ.

J Bacteriol. 2011 Oct;193(19):5574-5. doi: 10.1128/JB.05621-11.

PMID:
21914885
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Genome sequences of Alicycliphilus denitrificans strains BC and K601T.

Oosterkamp MJ, Veuskens T, Plugge CM, Langenhoff AA, Gerritse J, van Berkel WJ, Pieper DH, Junca H, Goodwin LA, Daligault HE, Bruce DC, Detter JC, Tapia R, Han CS, Land ML, Hauser LJ, Smidt H, Stams AJ.

J Bacteriol. 2011 Sep;193(18):5028-9. doi: 10.1128/JB.00365-11. Epub 2011 Jul 8.

PMID:
21742888
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Complete genome sequence of the filamentous anoxygenic phototrophic bacterium Chloroflexus aurantiacus.

Tang KH, Barry K, Chertkov O, Dalin E, Han CS, Hauser LJ, Honchak BM, Karbach LE, Land ML, Lapidus A, Larimer FW, Mikhailova N, Pitluck S, Pierson BK, Blankenship RE.

BMC Genomics. 2011 Jun 29;12:334. doi: 10.1186/1471-2164-12-334.

PMID:
21714912
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Complete genome sequence and updated annotation of Desulfovibrio alaskensis G20.

Hauser LJ, Land ML, Brown SD, Larimer F, Keller KL, Rapp-Giles BJ, Price MN, Lin M, Bruce DC, Detter JC, Tapia R, Han CS, Goodwin LA, Cheng JF, Pitluck S, Copeland A, Lucas S, Nolan M, Lapidus AL, Palumbo AV, Wall JD.

J Bacteriol. 2011 Aug;193(16):4268-9. doi: 10.1128/JB.05400-11. Epub 2011 Jun 17.

PMID:
21685289
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Complete genome sequence of the haloalkaliphilic, hydrogen-producing bacterium Halanaerobium hydrogeniformans.

Brown SD, Begemann MB, Mormile MR, Wall JD, Han CS, Goodwin LA, Pitluck S, Land ML, Hauser LJ, Elias DA.

J Bacteriol. 2011 Jul;193(14):3682-3. doi: 10.1128/JB.05209-11. Epub 2011 May 20.

PMID:
21602336
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Genome Sequence of the ethene- and vinyl chloride-oxidizing actinomycete Nocardioides sp. strain JS614.

Coleman NV, Wilson NL, Barry K, Brettin TS, Bruce DC, Copeland A, Dalin E, Detter JC, Del Rio TG, Goodwin LA, Hammon NM, Han S, Hauser LJ, Israni S, Kim E, Kyrpides N, Land ML, Lapidus A, Larimer FW, Lucas S, Pitluck S, Richardson P, Schmutz J, Tapia R, Thompson S, Tice HN, Spain JC, Gossett JG, Mattes TE.

J Bacteriol. 2011 Jul;193(13):3399-400. doi: 10.1128/JB.05109-11. Epub 2011 May 6.

PMID:
21551312
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Complete genome sequence of the Thermophilic Bacterium Exiguobacterium sp. AT1b.

Vishnivetskaya TA, Lucas S, Copeland A, Lapidus A, Glavina del Rio T, Dalin E, Tice H, Bruce DC, Goodwin LA, Pitluck S, Saunders E, Brettin T, Detter C, Han C, Larimer F, Land ML, Hauser LJ, Kyrpides NC, Ovchinnikova G, Kathariou S, Ramaley RF, Rodrigues DF, Hendrix C, Richardson P, Tiedje JM.

J Bacteriol. 2011 Jun;193(11):2880-1. doi: 10.1128/JB.00303-11. Epub 2011 Apr 1.

PMID:
21460088
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Complete genome sequence of the cellulose-degrading bacterium Cellulosilyticum lentocellum.

Miller DA, Suen G, Bruce D, Copeland A, Cheng JF, Detter C, Goodwin LA, Han CS, Hauser LJ, Land ML, Lapidus A, Lucas S, Meincke L, Pitluck S, Tapia R, Teshima H, Woyke T, Fox BG, Angert ER, Currie CR.

J Bacteriol. 2011 May;193(9):2357-8. doi: 10.1128/JB.00239-11. Epub 2011 Mar 11.

PMID:
21398547
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Genome sequence of the mercury-methylating strain Desulfovibrio desulfuricans ND132.

Brown SD, Gilmour CC, Kucken AM, Wall JD, Elias DA, Brandt CC, Podar M, Chertkov O, Held B, Bruce DC, Detter JC, Tapia R, Han CS, Goodwin LA, Cheng JF, Pitluck S, Woyke T, Mikhailova N, Ivanova NN, Han J, Lucas S, Lapidus AL, Land ML, Hauser LJ, Palumbo AV.

J Bacteriol. 2011 Apr;193(8):2078-9. doi: 10.1128/JB.00170-11. Epub 2011 Feb 25.

PMID:
21357488
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Complete genome sequences for the anaerobic, extremely thermophilic plant biomass-degrading bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensensis, and Caldicellulosiruptor lactoaceticus.

Blumer-Schuette SE, Ozdemir I, Mistry D, Lucas S, Lapidus A, Cheng JF, Goodwin LA, Pitluck S, Land ML, Hauser LJ, Woyke T, Mikhailova N, Pati A, Kyrpides NC, Ivanova N, Detter JC, Walston-Davenport K, Han S, Adams MW, Kelly RM.

J Bacteriol. 2011 Mar;193(6):1483-4. doi: 10.1128/JB.01515-10. Epub 2011 Jan 7.

PMID:
21216991
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Sequencing of multiple clostridial genomes related to biomass conversion and biofuel production.

Hemme CL, Mouttaki H, Lee YJ, Zhang G, Goodwin L, Lucas S, Copeland A, Lapidus A, Glavina del Rio T, Tice H, Saunders E, Brettin T, Detter JC, Han CS, Pitluck S, Land ML, Hauser LJ, Kyrpides N, Mikhailova N, He Z, Wu L, Van Nostrand JD, Henrissat B, He Q, Lawson PA, Tanner RS, Lynd LR, Wiegel J, Fields MW, Arkin AP, Schadt CW, Stevenson BS, McInerney MJ, Yang Y, Dong H, Xing D, Ren N, Wang A, Huhnke RL, Mielenz JR, Ding SY, Himmel ME, Taghavi S, van der Lelie D, Rubin EM, Zhou J.

J Bacteriol. 2010 Dec;192(24):6494-6. doi: 10.1128/JB.01064-10. Epub 2010 Oct 1.

PMID:
20889752
[PubMed - indexed for MEDLINE]
Free PMC Article

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