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Items: 18

1.

Data2Dynamics: a modeling environment tailored to parameter estimation in dynamical systems.

Raue A, Steiert B, Schelker M, Kreutz C, Maiwald T, Hass H, Vanlier J, Tönsing C, Adlung L, Engesser R, Mader W, Heinemann T, Hasenauer J, Schilling M, Höfer T, Klipp E, Theis F, Klingmüller U, Schöberl B, Timmer J.

Bioinformatics. 2015 Jul 3. pii: btv405. [Epub ahead of print]

PMID:
26142188
2.

ODE constrained mixture modelling: a method for unraveling subpopulation structures and dynamics.

Hasenauer J, Hasenauer C, Hucho T, Theis FJ.

PLoS Comput Biol. 2014 Jul 3;10(7):e1003686. doi: 10.1371/journal.pcbi.1003686. eCollection 2014 Jul.

3.

Dominant negative effects of tumor necrosis factor (TNF)-related apoptosis-inducing ligand (TRAIL) receptor 4 on TRAIL receptor 1 signaling by formation of heteromeric complexes.

Neumann S, Hasenauer J, Pollak N, Scheurich P.

J Biol Chem. 2014 Jun 6;289(23):16576-87. doi: 10.1074/jbc.M114.559468. Epub 2014 Apr 24.

4.

iVUN: interactive Visualization of Uncertain biochemical reaction Networks.

Vehlow C, Hasenauer J, Kramer A, Raue A, Hug S, Timmer J, Radde N, Theis FJ, Weiskopf D.

BMC Bioinformatics. 2013;14 Suppl 19:S2. doi: 10.1186/1471-2105-14-S19-S2. Epub 2013 Nov 12.

5.

Modeling of 2D diffusion processes based on microscopy data: parameter estimation and practical identifiability analysis.

Hock S, Hasenauer J, Theis FJ.

BMC Bioinformatics. 2013;14 Suppl 10:S7. doi: 10.1186/1471-2105-14-S10-S7. Epub 2013 Aug 12.

6.

Pain modulators regulate the dynamics of PKA-RII phosphorylation in subgroups of sensory neurons.

Isensee J, Diskar M, Waldherr S, Buschow R, Hasenauer J, Prinz A, Allgöwer F, Herberg FW, Hucho T.

J Cell Sci. 2014 Jan 1;127(Pt 1):216-29. doi: 10.1242/jcs.136580. Epub 2013 Nov 4.

7.

Determinants of robustness in spindle assembly checkpoint signalling.

Heinrich S, Geissen EM, Kamenz J, Trautmann S, Widmer C, Drewe P, Knop M, Radde N, Hasenauer J, Hauf S.

Nat Cell Biol. 2013 Nov;15(11):1328-39. doi: 10.1038/ncb2864. Epub 2013 Oct 27.

PMID:
24161933
8.

Method of conditional moments (MCM) for the Chemical Master Equation: a unified framework for the method of moments and hybrid stochastic-deterministic models.

Hasenauer J, Wolf V, Kazeroonian A, Theis FJ.

J Math Biol. 2014 Sep;69(3):687-735. doi: 10.1007/s00285-013-0711-5. Epub 2013 Aug 6.

PMID:
23918091
9.

Wound-healing growth factor, basic FGF, induces Erk1/2-dependent mechanical hyperalgesia.

Andres C, Hasenauer J, Ahn HS, Joseph EK, Isensee J, Theis FJ, Allgöwer F, Levine JD, Dib-Hajj SD, Waxman SG, Hucho T.

Pain. 2013 Oct;154(10):2216-26. doi: 10.1016/j.pain.2013.07.005. Epub 2013 Jul 16.

PMID:
23867734
10.

Sharpening of expression domains induced by transcription and microRNA regulation within a spatio-temporal model of mid-hindbrain boundary formation.

Hock S, Ng YK, Hasenauer J, Wittmann D, Lutter D, Trümbach D, Wurst W, Prakash N, Theis FJ.

BMC Syst Biol. 2013 Jun 25;7:48. doi: 10.1186/1752-0509-7-48.

11.

High-dimensional Bayesian parameter estimation: case study for a model of JAK2/STAT5 signaling.

Hug S, Raue A, Hasenauer J, Bachmann J, Klingmüller U, Timmer J, Theis FJ.

Math Biosci. 2013 Dec;246(2):293-304. doi: 10.1016/j.mbs.2013.04.002. Epub 2013 Apr 16.

PMID:
23602931
12.

Analysis and simulation of division- and label-structured population models : a new tool to analyze proliferation assays.

Hasenauer J, Schittler D, Allgöwer F.

Bull Math Biol. 2012 Nov;74(11):2692-732. doi: 10.1007/s11538-012-9774-5. Epub 2012 Oct 20.

PMID:
23086287
13.

A visual analytics approach for models of heterogeneous cell populations.

Hasenauer J, Heinrich J, Doszczak M, Scheurich P, Weiskopf D, Allgöwer F.

EURASIP J Bioinform Syst Biol. 2012 May 31;2012(1):4. doi: 10.1186/1687-4153-2012-4.

14.

Threshold-free population analysis identifies larger DRG neurons to respond stronger to NGF stimulation.

Andres C, Hasenauer J, Allgower F, Hucho T.

PLoS One. 2012;7(3):e34257. doi: 10.1371/journal.pone.0034257. Epub 2012 Mar 27.

15.

Identification of models of heterogeneous cell populations from population snapshot data.

Hasenauer J, Waldherr S, Doszczak M, Radde N, Scheurich P, Allgöwer F.

BMC Bioinformatics. 2011 Apr 28;12:125. doi: 10.1186/1471-2105-12-125.

16.

Cell differentiation modeled via a coupled two-switch regulatory network.

Schittler D, Hasenauer J, Allgöwer F, Waldherr S.

Chaos. 2010 Dec;20(4):045121. doi: 10.1063/1.3505000.

PMID:
21198133
17.

Parameter identification, experimental design and model falsification for biological network models using semidefinite programming.

Hasenauer J, Waldherr S, Wagner K, Allgöwer F.

IET Syst Biol. 2010 Mar;4(2):119-30. doi: 10.1049/iet-syb.2009.0030.

PMID:
20232992
18.

Allosteric regulation of the access channels to the Rb+ occlusion sites of (Na+ + K+)-ATPase.

Hasenauer J, Huang WH, Askari A.

J Biol Chem. 1993 Feb 15;268(5):3289-97.

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