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Results: 1 to 20 of 29

1.

Evolutionary characterization of pig interferon-inducible transmembrane gene family and member expression dynamics in tracheobronchial lymph nodes of pigs infected with swine respiratory disease viruses.

Miller LC, Jiang Z, Sang Y, Harhay GP, Lager KM.

Vet Immunol Immunopathol. 2014 Jun 15;159(3-4):180-91. doi: 10.1016/j.vetimm.2014.02.015. Epub 2014 Mar 3.

PMID:
24656980
[PubMed - in process]
2.

Complete Closed Genome Sequences of Four Mannheimia varigena Isolates from Cattle with Shipping Fever.

Harhay GP, Murray RW, Lubbers B, Griffin D, Koren S, Phillippy AM, Harhay DM, Bono J, Clawson ML, Heaton MP, Chitko-McKown CG, Smith TP.

Genome Announc. 2014 Feb 13;2(1). pii: e00088-14. doi: 10.1128/genomeA.00088-14.

PMID:
24526648
[PubMed]
Free PMC Article
3.

Complete Closed Genome Sequences of Three Bibersteinia trehalosi Nasopharyngeal Isolates from Cattle with Shipping Fever.

Harhay GP, McVey DS, Koren S, Phillippy AM, Bono J, Harhay DM, Clawson ML, Heaton MP, Chitko-McKown CG, Korlach J, Smith TP.

Genome Announc. 2014 Feb 13;2(1). pii: e00084-14. doi: 10.1128/genomeA.00084-14.

PMID:
24526647
[PubMed]
Free PMC Article
4.

Reducing assembly complexity of microbial genomes with single-molecule sequencing.

Koren S, Harhay GP, Smith TP, Bono JL, Harhay DM, Mcvey SD, Radune D, Bergman NH, Phillippy AM.

Genome Biol. 2013;14(9):R101.

PMID:
24034426
[PubMed - in process]
Free PMC Article
5.

Effects of TMEM154 haplotypes 1 and 3 on susceptibility to ovine progressive pneumonia virus following natural exposure in sheep.

Leymaster KA, Chitko-McKown CG, Clawson ML, Harhay GP, Heaton MP.

J Anim Sci. 2013 Nov;91(11):5114-21. doi: 10.2527/jas.2013-6663. Epub 2013 Aug 29.

PMID:
23989875
[PubMed - indexed for MEDLINE]
6.

Small ruminant lentivirus genetic subgroups associate with sheep TMEM154 genotypes.

Sider LH, Heaton MP, Chitko-McKown CG, Harhay GP, Smith TP, Leymaster KA, Laegreid WW, Clawson ML.

Vet Res. 2013 Jul 29;44:64. doi: 10.1186/1297-9716-44-64.

PMID:
23895262
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Complete Closed Genome Sequences of Mannheimia haemolytica Serotypes A1 and A6, Isolated from Cattle.

Harhay GP, Koren S, Phillippy AM, McVey DS, Kuszak J, Clawson ML, Harhay DM, Heaton MP, Chitko-McKown CG, Smith TP.

Genome Announc. 2013 May 16;1(3). pii: e00188-13. doi: 10.1128/genomeA.00188-13.

PMID:
23682137
[PubMed]
Free PMC Article
8.

Reactomes of porcine alveolar macrophages infected with porcine reproductive and respiratory syndrome virus.

Jiang Z, Zhou X, Michal JJ, Wu XL, Zhang L, Zhang M, Ding B, Liu B, Manoranjan VS, Neill JD, Harhay GP, Kehrli ME Jr, Miller LC.

PLoS One. 2013;8(3):e59229. doi: 10.1371/journal.pone.0059229. Epub 2013 Mar 19.

PMID:
23527143
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Genetic testing for TMEM154 mutations associated with lentivirus susceptibility in sheep.

Heaton MP, Kalbfleisch TS, Petrik DT, Simpson B, Kijas JW, Clawson ML, Chitko-McKown CG, Harhay GP, Leymaster KA; International Sheep Genomics Consortium.

PLoS One. 2013;8(2):e55490. doi: 10.1371/journal.pone.0055490. Epub 2013 Feb 11.

PMID:
23408992
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Next-generation sequencing of the porcine skeletal muscle transcriptome for computational prediction of microRNA gene targets.

McDaneld TG, Smith TP, Harhay GP, Wiedmann RT.

PLoS One. 2012;7(7):e42039. doi: 10.1371/journal.pone.0042039. Epub 2012 Jul 27.

PMID:
22848698
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Comparison of bacterial communities in faeces of beef cattle fed diets containing corn and wet distillers' grain with solubles.

Durso LM, Wells JE, Harhay GP, Rice WC, Kuehn L, Bono JL, Shackelford S, Wheeler T, Smith TP.

Lett Appl Microbiol. 2012 Aug;55(2):109-14. doi: 10.1111/j.1472-765X.2012.03265.x. Epub 2012 Jun 13.

PMID:
22583366
[PubMed - indexed for MEDLINE]
12.

Phylogeny of Shiga toxin-producing Escherichia coli O157 isolated from cattle and clinically ill humans.

Bono JL, Smith TP, Keen JE, Harhay GP, McDaneld TG, Mandrell RE, Jung WK, Besser TE, Gerner-Smidt P, Bielaszewska M, Karch H, Clawson ML.

Mol Biol Evol. 2012 Aug;29(8):2047-62. doi: 10.1093/molbev/mss072. Epub 2012 Feb 21.

PMID:
22355013
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Reduced lentivirus susceptibility in sheep with TMEM154 mutations.

Heaton MP, Clawson ML, Chitko-Mckown CG, Leymaster KA, Smith TP, Harhay GP, White SN, Herrmann-Hoesing LM, Mousel MR, Lewis GS, Kalbfleisch TS, Keen JE, Laegreid WW.

PLoS Genet. 2012 Jan;8(1):e1002467. doi: 10.1371/journal.pgen.1002467. Epub 2012 Jan 26.

PMID:
22291605
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Bacterial community analysis of beef cattle feedlots reveals that pen surface is distinct from feces.

Durso LM, Harhay GP, Smith TP, Bono JL, DeSantis TZ, Clawson ML.

Foodborne Pathog Dis. 2011 May;8(5):647-9. doi: 10.1089/fpd.2010.0774. Epub 2011 Jan 9.

PMID:
21214381
[PubMed - indexed for MEDLINE]
15.

Virulence-associated and antibiotic resistance genes of microbial populations in cattle feces analyzed using a metagenomic approach.

Durso LM, Harhay GP, Bono JL, Smith TP.

J Microbiol Methods. 2011 Feb;84(2):278-82. doi: 10.1016/j.mimet.2010.12.008. Epub 2010 Dec 16.

PMID:
21167876
[PubMed - indexed for MEDLINE]
16.

An atlas of bovine gene expression reveals novel distinctive tissue characteristics and evidence for improving genome annotation.

Harhay GP, Smith TP, Alexander LJ, Haudenschild CD, Keele JW, Matukumalli LK, Schroeder SG, Van Tassell CP, Gresham CR, Bridges SM, Burgess SC, Sonstegard TS.

Genome Biol. 2010;11(10):R102. doi: 10.1186/gb-2010-11-10-r102. Epub 2010 Oct 20.

PMID:
20961407
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Animal-to-animal variation in fecal microbial diversity among beef cattle.

Durso LM, Harhay GP, Smith TP, Bono JL, Desantis TZ, Harhay DM, Andersen GL, Keen JE, Laegreid WW, Clawson ML.

Appl Environ Microbiol. 2010 Jul;76(14):4858-62. doi: 10.1128/AEM.00207-10. Epub 2010 May 14.

PMID:
20472731
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

In-depth global analysis of transcript abundance levels in porcine alveolar macrophages following infection with porcine reproductive and respiratory syndrome virus.

Miller LC, Neill JD, Harhay GP, Lager KM, Laegreid WW, Kehrli ME Jr.

Adv Virol. 2010;2010:864181. doi: 10.1155/2010/864181. Epub 2011 Jan 12.

PMID:
22331987
[PubMed]
Free PMC Article
19.

The genome sequence of taurine cattle: a window to ruminant biology and evolution.

Bovine Genome Sequencing and Analysis Consortium, Elsik CG, Tellam RL, Worley KC, Gibbs RA, Muzny DM, Weinstock GM, Adelson DL, Eichler EE, Elnitski L, Guigó R, Hamernik DL, Kappes SM, Lewin HA, Lynn DJ, Nicholas FW, Reymond A, Rijnkels M, Skow LC, Zdobnov EM, Schook L, Womack J, Alioto T, Antonarakis SE, Astashyn A, Chapple CE, Chen HC, Chrast J, Câmara F, Ermolaeva O, Henrichsen CN, Hlavina W, Kapustin Y, Kiryutin B, Kitts P, Kokocinski F, Landrum M, Maglott D, Pruitt K, Sapojnikov V, Searle SM, Solovyev V, Souvorov A, Ucla C, Wyss C, Anzola JM, Gerlach D, Elhaik E, Graur D, Reese JT, Edgar RC, McEwan JC, Payne GM, Raison JM, Junier T, Kriventseva EV, Eyras E, Plass M, Donthu R, Larkin DM, Reecy J, Yang MQ, Chen L, Cheng Z, Chitko-McKown CG, Liu GE, Matukumalli LK, Song J, Zhu B, Bradley DG, Brinkman FS, Lau LP, Whiteside MD, Walker A, Wheeler TT, Casey T, German JB, Lemay DG, Maqbool NJ, Molenaar AJ, Seo S, Stothard P, Baldwin CL, Baxter R, Brinkmeyer-Langford CL, Brown WC, Childers CP, Connelley T, Ellis SA, Fritz K, Glass EJ, Herzig CT, Iivanainen A, Lahmers KK, Bennett AK, Dickens CM, Gilbert JG, Hagen DE, Salih H, Aerts J, Caetano AR, Dalrymple B, Garcia JF, Gill CA, Hiendleder SG, Memili E, Spurlock D, Williams JL, Alexander L, Brownstein MJ, Guan L, Holt RA, Jones SJ, Marra MA, Moore R, Moore SS, Roberts A, Taniguchi M, Waterman RC, Chacko J, Chandrabose MM, Cree A, Dao MD, Dinh HH, Gabisi RA, Hines S, Hume J, Jhangiani SN, Joshi V, Kovar CL, Lewis LR, Liu YS, Lopez J, Morgan MB, Nguyen NB, Okwuonu GO, Ruiz SJ, Santibanez J, Wright RA, Buhay C, Ding Y, Dugan-Rocha S, Herdandez J, Holder M, Sabo A, Egan A, Goodell J, Wilczek-Boney K, Fowler GR, Hitchens ME, Lozado RJ, Moen C, Steffen D, Warren JT, Zhang J, Chiu R, Schein JE, Durbin KJ, Havlak P, Jiang H, Liu Y, Qin X, Ren Y, Shen Y, Song H, Bell SN, Davis C, Johnson AJ, Lee S, Nazareth LV, Patel BM, Pu LL, Vattathil S, Williams RL Jr, Curry S, Hamilton C, Sodergren E, Wheeler DA, Barris W, Bennett GL, Eggen A, Green RD, Harhay GP, Hobbs M, Jann O, Keele JW, Kent MP, Lien S, McKay SD, McWilliam S, Ratnakumar A, Schnabel RD, Smith T, Snelling WM, Sonstegard TS, Stone RT, Sugimoto Y, Takasuga A, Taylor JF, Van Tassell CP, Macneil MD, Abatepaulo AR, Abbey CA, Ahola V, Almeida IG, Amadio AF, Anatriello E, Bahadue SM, Biase FH, Boldt CR, Carroll JA, Carvalho WA, Cervelatti EP, Chacko E, Chapin JE, Cheng Y, Choi J, Colley AJ, de Campos TA, De Donato M, Santos IK, de Oliveira CJ, Deobald H, Devinoy E, Donohue KE, Dovc P, Eberlein A, Fitzsimmons CJ, Franzin AM, Garcia GR, Genini S, Gladney CJ, Grant JR, Greaser ML, Green JA, Hadsell DL, Hakimov HA, Halgren R, Harrow JL, Hart EA, Hastings N, Hernandez M, Hu ZL, Ingham A, Iso-Touru T, Jamis C, Jensen K, Kapetis D, Kerr T, Khalil SS, Khatib H, Kolbehdari D, Kumar CG, Kumar D, Leach R, Lee JC, Li C, Logan KM, Malinverni R, Marques E, Martin WF, Martins NF, Maruyama SR, Mazza R, McLean KL, Medrano JF, Moreno BT, Moré DD, Muntean CT, Nandakumar HP, Nogueira MF, Olsaker I, Pant SD, Panzitta F, Pastor RC, Poli MA, Poslusny N, Rachagani S, Ranganathan S, Razpet A, Riggs PK, Rincon G, Rodriguez-Osorio N, Rodriguez-Zas SL, Romero NE, Rosenwald A, Sando L, Schmutz SM, Shen L, Sherman L, Southey BR, Lutzow YS, Sweedler JV, Tammen I, Telugu BP, Urbanski JM, Utsunomiya YT, Verschoor CP, Waardenberg AJ, Wang Z, Ward R, Weikard R, Welsh TH Jr, White SN, Wilming LG, Wunderlich KR, Yang J, Zhao FQ.

Science. 2009 Apr 24;324(5926):522-8. doi: 10.1126/science.1169588.

PMID:
19390049
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Effect of porcine reproductive and respiratory syndrome virus on porcine alveolar macrophage function as determined using serial analysis of gene expression (SAGE).

Miller LC, Harhay GP, Lager KM, Smith TP, Neill JD.

Dev Biol (Basel). 2008;132:169-74.

PMID:
18817299
[PubMed - indexed for MEDLINE]

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