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Results: 1 to 20 of 127

1.

A Comprehensive and High-Resolution Genome-wide Response of p53 to Stress.

Chang GS, Chen XA, Park B, Rhee HS, Li P, Han KH, Mishra T, Chan-Salis KY, Li Y, Hardison RC, Wang Y, Pugh BF.

Cell Rep. 2014 Jul 15. pii: S2211-1247(14)00499-9. doi: 10.1016/j.celrep.2014.06.030. [Epub ahead of print]

PMID:
25043190
[PubMed - as supplied by publisher]
Free Article
2.

Discovering enhancers directly by activity.

Hardison RC.

Nat Methods. 2014 May;11(5):491-2. doi: 10.1038/nmeth.2933. No abstract available.

PMID:
24781321
[PubMed - indexed for MEDLINE]
3.

Defining functional DNA elements in the human genome.

Kellis M, Wold B, Snyder MP, Bernstein BE, Kundaje A, Marinov GK, Ward LD, Birney E, Crawford GE, Dekker J, Dunham I, Elnitski LL, Farnham PJ, Feingold EA, Gerstein M, Giddings MC, Gilbert DM, Gingeras TR, Green ED, Guigo R, Hubbard T, Kent J, Lieb JD, Myers RM, Pazin MJ, Ren B, Stamatoyannopoulos JA, Weng Z, White KP, Hardison RC.

Proc Natl Acad Sci U S A. 2014 Apr 29;111(17):6131-8. doi: 10.1073/pnas.1318948111. Epub 2014 Apr 21. Review.

PMID:
24753594
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

MRHMMs: Multivariate Regression Hidden Markov Models and the variantS.

Lee Y, Ghosh D, Hardison RC, Zhang Y.

Bioinformatics. 2014 Jun 15;30(12):1755-6. doi: 10.1093/bioinformatics/btu070. Epub 2014 Feb 19.

PMID:
24558116
[PubMed - in process]
5.

Lineage and species-specific long noncoding RNAs during erythro-megakaryocytic development.

Paralkar VR, Mishra T, Luan J, Yao Y, Kossenkov AV, Anderson SM, Dunagin M, Pimkin M, Gore M, Sun D, Konuthula N, Raj A, An X, Mohandas N, Bodine DM, Hardison RC, Weiss MJ.

Blood. 2014 Mar 20;123(12):1927-37. doi: 10.1182/blood-2013-12-544494. Epub 2014 Feb 4.

PMID:
24497530
[PubMed - indexed for MEDLINE]
6.

Function of GATA factors in the adult mouse liver.

Zheng R, Rebolledo-Jaramillo B, Zong Y, Wang L, Russo P, Hancock W, Stanger BZ, Hardison RC, Blobel GA.

PLoS One. 2013 Dec 18;8(12):e83723. doi: 10.1371/journal.pone.0083723. eCollection 2013.

PMID:
24367609
[PubMed - in process]
Free PMC Article
7.

Integrating and mining the chromatin landscape of cell-type specificity using self-organizing maps.

Mortazavi A, Pepke S, Jansen C, Marinov GK, Ernst J, Kellis M, Hardison RC, Myers RM, Wold BJ.

Genome Res. 2013 Dec;23(12):2136-48. doi: 10.1101/gr.158261.113. Epub 2013 Oct 29.

PMID:
24170599
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Updates of the HbVar database of human hemoglobin variants and thalassemia mutations.

Giardine B, Borg J, Viennas E, Pavlidis C, Moradkhani K, Joly P, Bartsakoulia M, Riemer C, Miller W, Tzimas G, Wajcman H, Hardison RC, Patrinos GP.

Nucleic Acids Res. 2014 Jan;42(Database issue):D1063-9. doi: 10.1093/nar/gkt911. Epub 2013 Oct 16.

PMID:
24137000
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Genetics. GWAS to therapy by genome edits?

Hardison RC, Blobel GA.

Science. 2013 Oct 11;342(6155):206-7. doi: 10.1126/science.1245813. No abstract available.

PMID:
24115432
[PubMed - indexed for MEDLINE]
10.

A cluster to remember.

Blobel GA, Hardison RC.

Cell. 2013 Aug 15;154(4):718-20. doi: 10.1016/j.cell.2013.07.041.

PMID:
23953105
[PubMed - indexed for MEDLINE]
11.

Identification of biologically relevant enhancers in human erythroid cells.

Su MY, Steiner LA, Bogardus H, Mishra T, Schulz VP, Hardison RC, Gallagher PG.

J Biol Chem. 2013 Mar 22;288(12):8433-44. doi: 10.1074/jbc.M112.413260. Epub 2013 Jan 22.

PMID:
23341446
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Integrative annotation of chromatin elements from ENCODE data.

Hoffman MM, Ernst J, Wilder SP, Kundaje A, Harris RS, Libbrecht M, Giardine B, Ellenbogen PM, Bilmes JA, Birney E, Hardison RC, Dunham I, Kellis M, Noble WS.

Nucleic Acids Res. 2013 Jan;41(2):827-41. doi: 10.1093/nar/gks1284. Epub 2012 Dec 5.

PMID:
23221638
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Evolution of hemoglobin and its genes.

Hardison RC.

Cold Spring Harb Perspect Med. 2012 Dec 1;2(12):a011627. doi: 10.1101/cshperspect.a011627.

PMID:
23209182
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Trisomy 21-associated defects in human primitive hematopoiesis revealed through induced pluripotent stem cells.

Chou ST, Byrska-Bishop M, Tober JM, Yao Y, Vandorn D, Opalinska JB, Mills JA, Choi JK, Speck NA, Gadue P, Hardison RC, Nemiroff RL, French DL, Weiss MJ.

Proc Natl Acad Sci U S A. 2012 Oct 23;109(43):17573-8. doi: 10.1073/pnas.1211175109. Epub 2012 Oct 8.

PMID:
23045704
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Genome-wide epigenetic data facilitate understanding of disease susceptibility association studies.

Hardison RC.

J Biol Chem. 2012 Sep 7;287(37):30932-40. doi: 10.1074/jbc.R112.352427. Epub 2012 Sep 5. Review.

PMID:
22952232
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Tissue-specific mitotic bookmarking by hematopoietic transcription factor GATA1.

Kadauke S, Udugama MI, Pawlicki JM, Achtman JC, Jain DP, Cheng Y, Hardison RC, Blobel GA.

Cell. 2012 Aug 17;150(4):725-37. doi: 10.1016/j.cell.2012.06.038.

PMID:
22901805
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Genomic approaches towards finding cis-regulatory modules in animals.

Hardison RC, Taylor J.

Nat Rev Genet. 2012 Jun 18;13(7):469-83. doi: 10.1038/nrg3242. Review.

PMID:
22705667
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Revealing mammalian evolutionary relationships by comparative analysis of gene clusters.

Song G, Riemer C, Dickins B, Kim HL, Zhang L, Zhang Y, Hsu CH, Hardison RC, Nisc Comparative Sequencing Program, Green ED, Miller W.

Genome Biol Evol. 2012;4(4):586-601. doi: 10.1093/gbe/evs032. Epub 2012 Mar 27.

PMID:
22454131
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Genome-wide ChIP-Seq reveals a dramatic shift in the binding of the transcription factor erythroid Kruppel-like factor during erythrocyte differentiation.

Pilon AM, Ajay SS, Kumar SA, Steiner LA, Cherukuri PF, Wincovitch S, Anderson SM; NISC Comparative Sequencing Center, Mullikin JC, Gallagher PG, Hardison RC, Margulies EH, Bodine DM.

Blood. 2011 Oct 27;118(17):e139-48. doi: 10.1182/blood-2011-05-355107. Epub 2011 Sep 6.

PMID:
21900194
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

What fraction of the human genome is functional?

Ponting CP, Hardison RC.

Genome Res. 2011 Nov;21(11):1769-76. doi: 10.1101/gr.116814.110. Epub 2011 Aug 29. Review.

PMID:
21875934
[PubMed - indexed for MEDLINE]
Free PMC Article

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