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Results: 10

1.

Arabidopsis meiotic crossover hot spots overlap with H2A.Z nucleosomes at gene promoters.

Choi K, Zhao X, Kelly KA, Venn O, Higgins JD, Yelina NE, Hardcastle TJ, Ziolkowski PA, Copenhaver GP, Franklin FC, McVean G, Henderson IR.

Nat Genet. 2013 Nov;45(11):1327-36. doi: 10.1038/ng.2766. Epub 2013 Sep 22.

PMID:
24056716
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

High-throughput sequencing of cytosine methylation in plant DNA.

Hardcastle TJ.

Plant Methods. 2013 Jun 7;9(1):16. doi: 10.1186/1746-4811-9-16.

PMID:
23758782
[PubMed]
Free PMC Article
3.

Empirical Bayesian analysis of paired high-throughput sequencing data with a beta-binomial distribution.

Hardcastle TJ, Kelly KA.

BMC Bioinformatics. 2013 Apr 23;14:135. doi: 10.1186/1471-2105-14-135.

PMID:
23617841
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Metastable differentially methylated regions within Arabidopsis inbred populations are associated with modified expression of non-coding transcripts.

Havecker ER, Wallbridge LM, Fedito P, Hardcastle TJ, Baulcombe DC.

PLoS One. 2012;7(9):e45242. doi: 10.1371/journal.pone.0045242. Epub 2012 Sep 20.

PMID:
23028873
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Identifying small interfering RNA loci from high-throughput sequencing data.

Hardcastle TJ, Kelly KA, Baulcombe DC.

Bioinformatics. 2012 Feb 15;28(4):457-63. doi: 10.1093/bioinformatics/btr687. Epub 2011 Dec 9.

PMID:
22171331
[PubMed - indexed for MEDLINE]
Free Article
6.

Getting a full dose? Reconsidering sex chromosome dosage compensation in the silkworm, Bombyx mori.

Walters JR, Hardcastle TJ.

Genome Biol Evol. 2011;3:491-504. doi: 10.1093/gbe/evr036. Epub 2011 Apr 20.

PMID:
21508430
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

baySeq: empirical Bayesian methods for identifying differential expression in sequence count data.

Hardcastle TJ, Kelly KA.

BMC Bioinformatics. 2010 Aug 10;11:422. doi: 10.1186/1471-2105-11-422.

PMID:
20698981
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Small silencing RNAs in plants are mobile and direct epigenetic modification in recipient cells.

Molnar A, Melnyk CW, Bassett A, Hardcastle TJ, Dunn R, Baulcombe DC.

Science. 2010 May 14;328(5980):872-5. doi: 10.1126/science.1187959. Epub 2010 Apr 22.

PMID:
20413459
[PubMed - indexed for MEDLINE]
Free Article
9.

The Arabidopsis RNA-directed DNA methylation argonautes functionally diverge based on their expression and interaction with target loci.

Havecker ER, Wallbridge LM, Hardcastle TJ, Bush MS, Kelly KA, Dunn RM, Schwach F, Doonan JH, Baulcombe DC.

Plant Cell. 2010 Feb;22(2):321-34. doi: 10.1105/tpc.109.072199. Epub 2010 Feb 19.

PMID:
20173091
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Analysis of small RNA in fission yeast; centromeric siRNAs are potentially generated through a structured RNA.

Djupedal I, Kos-Braun IC, Mosher RA, Söderholm N, Simmer F, Hardcastle TJ, Fender A, Heidrich N, Kagansky A, Bayne E, Wagner EG, Baulcombe DC, Allshire RC, Ekwall K.

EMBO J. 2009 Dec 16;28(24):3832-44. doi: 10.1038/emboj.2009.351. Epub .

PMID:
19942857
[PubMed - indexed for MEDLINE]
Free PMC Article

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