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Items: 1 to 20 of 29

1.

Reactive Oxygen Species Play a Role in the Infection of the Necrotrophic Fungi, Rhizoctonia solani in Wheat.

Foley RC, Kidd BN, Hane JK, Anderson JP, Singh KB.

PLoS One. 2016 Mar 31;11(3):e0152548. doi: 10.1371/journal.pone.0152548. eCollection 2016.

2.

Comparative genomics and prediction of conditionally dispensable sequences in legume-infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors.

Williams AH, Sharma M, Thatcher LF, Azam S, Hane JK, Sperschneider J, Kidd BN, Anderson JP, Ghosh R, Garg G, Lichtenzveig J, Kistler HC, Shea T, Young S, Buck SA, Kamphuis LG, Saxena R, Pande S, Ma LJ, Varshney RK, Singh KB.

BMC Genomics. 2016 Mar 5;17(1):191. doi: 10.1186/s12864-016-2486-8.

3.

Comprehensive Annotation of the Parastagonospora nodorum Reference Genome Using Next-Generation Genomics, Transcriptomics and Proteogenomics.

Syme RA, Tan KC, Hane JK, Dodhia K, Stoll T, Hastie M, Furuki E, Ellwood SR, Williams AH, Tan YF, Testa AC, Gorman JJ, Oliver RP.

PLoS One. 2016 Feb 3;11(2):e0147221. doi: 10.1371/journal.pone.0147221. eCollection 2016.

4.

Utilizing Gene Tree Variation to Identify Candidate Effector Genes in Zymoseptoria tritici.

McDonald MC, McGinness L, Hane JK, Williams AH, Milgate A, Solomon PS.

G3 (Bethesda). 2016 Apr 7;6(4):779-91. doi: 10.1534/g3.115.025197.

5.

Proteomic Analysis of Rhizoctonia solani Identifies Infection-specific, Redox Associated Proteins and Insight into Adaptation to Different Plant Hosts.

Anderson JP, Hane JK, Stoll T, Pain N, Hastie ML, Kaur P, Hoogland C, Gorman JJ, Singh KB.

Mol Cell Proteomics. 2016 Apr;15(4):1188-203. doi: 10.1074/mcp.M115.054502. Epub 2016 Jan 25.

6.

Evaluation of Secretion Prediction Highlights Differing Approaches Needed for Oomycete and Fungal Effectors.

Sperschneider J, Williams AH, Hane JK, Singh KB, Taylor JM.

Front Plant Sci. 2015 Dec 23;6:1168. doi: 10.3389/fpls.2015.01168. eCollection 2015.

7.

Next-generation re-sequencing as a tool for rapid bioinformatic screening of presence and absence of genes and accessory chromosomes across isolates of Zymoseptoria tritici.

McDonald MC, Williams AH, Milgate A, Pattemore JA, Solomon PS, Hane JK.

Fungal Genet Biol. 2015 Jun;79:71-5. doi: 10.1016/j.fgb.2015.04.012.

8.

The Arabidopsis KH-Domain RNA-Binding Protein ESR1 Functions in Components of Jasmonate Signalling, Unlinking Growth Restraint and Resistance to Stress.

Thatcher LF, Kamphuis LG, Hane JK, Oñate-Sánchez L, Singh KB.

PLoS One. 2015 May 18;10(5):e0126978. doi: 10.1371/journal.pone.0126978. eCollection 2015.

9.

Analysis of conglutin seed storage proteins across lupin species using transcriptomic, protein and comparative genomic approaches.

Foley RC, Jimenez-Lopez JC, Kamphuis LG, Hane JK, Melser S, Singh KB.

BMC Plant Biol. 2015 Apr 19;15:106. doi: 10.1186/s12870-015-0485-6.

10.

CodingQuarry: highly accurate hidden Markov model gene prediction in fungal genomes using RNA-seq transcripts.

Testa AC, Hane JK, Ellwood SR, Oliver RP.

BMC Genomics. 2015 Mar 11;16:170. doi: 10.1186/s12864-015-1344-4.

11.

The genome sequence of the biocontrol fungus Metarhizium anisopliae and comparative genomics of Metarhizium species.

Pattemore JA, Hane JK, Williams AH, Wilson BA, Stodart BJ, Ash GJ.

BMC Genomics. 2014 Aug 7;15:660. doi: 10.1186/1471-2164-15-660.

12.

Transcriptome sequencing of different narrow-leafed lupin tissue types provides a comprehensive uni-gene assembly and extensive gene-based molecular markers.

Kamphuis LG, Hane JK, Nelson MN, Gao L, Atkins CA, Singh KB.

Plant Biotechnol J. 2015 Jan;13(1):14-25. doi: 10.1111/pbi.12229. Epub 2014 Jul 24.

13.

Genome sequencing and comparative genomics of the broad host-range pathogen Rhizoctonia solani AG8.

Hane JK, Anderson JP, Williams AH, Sperschneider J, Singh KB.

PLoS Genet. 2014 May 8;10(5):e1004281. doi: 10.1371/journal.pgen.1004281. eCollection 2014 May.

14.

A comparative hidden Markov model analysis pipeline identifies proteins characteristic of cereal-infecting fungi.

Sperschneider J, Gardiner DM, Taylor JM, Hane JK, Singh KB, Manners JM.

BMC Genomics. 2013 Nov 20;14:807. doi: 10.1186/1471-2164-14-807.

15.

Resequencing and comparative genomics of Stagonospora nodorum: sectional gene absence and effector discovery.

Syme RA, Hane JK, Friesen TL, Oliver RP.

G3 (Bethesda). 2013 Jun 21;3(6):959-69. doi: 10.1534/g3.112.004994.

16.

Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement.

Varshney RK, Song C, Saxena RK, Azam S, Yu S, Sharpe AG, Cannon S, Baek J, Rosen BD, Tar'an B, Millan T, Zhang X, Ramsay LD, Iwata A, Wang Y, Nelson W, Farmer AD, Gaur PM, Soderlund C, Penmetsa RV, Xu C, Bharti AK, He W, Winter P, Zhao S, Hane JK, Carrasquilla-Garcia N, Condie JA, Upadhyaya HD, Luo MC, Thudi M, Gowda CL, Singh NP, Lichtenzveig J, Gali KK, Rubio J, Nadarajan N, Dolezel J, Bansal KC, Xu X, Edwards D, Zhang G, Kahl G, Gil J, Singh KB, Datta SK, Jackson SA, Wang J, Cook DR.

Nat Biotechnol. 2013 Mar;31(3):240-6. doi: 10.1038/nbt.2491. Epub 2013 Jan 27.

PMID:
23354103
17.

Comparative genomics of a plant-pathogenic fungus, Pyrenophora tritici-repentis, reveals transduplication and the impact of repeat elements on pathogenicity and population divergence.

Manning VA, Pandelova I, Dhillon B, Wilhelm LJ, Goodwin SB, Berlin AM, Figueroa M, Freitag M, Hane JK, Henrissat B, Holman WH, Kodira CD, Martin J, Oliver RP, Robbertse B, Schackwitz W, Schwartz DC, Spatafora JW, Turgeon BG, Yandava C, Young S, Zhou S, Zeng Q, Grigoriev IV, Ma LJ, Ciuffetti LM.

G3 (Bethesda). 2013 Jan;3(1):41-63. doi: 10.1534/g3.112.004044. Epub 2013 Jan 1.

18.

Transcriptome analysis of Stagonospora nodorum: gene models, effectors, metabolism and pantothenate dispensability.

Ipcho SV, Hane JK, Antoni EA, Ahren D, Henrissat B, Friesen TL, Solomon PS, Oliver RP.

Mol Plant Pathol. 2012 Aug;13(6):531-45. doi: 10.1111/j.1364-3703.2011.00770.x. Epub 2011 Dec 6.

PMID:
22145589
19.

Development of genomic resources for the narrow-leafed lupin (Lupinus angustifolius): construction of a bacterial artificial chromosome (BAC) library and BAC-end sequencing.

Gao LL, Hane JK, Kamphuis LG, Foley R, Shi BJ, Atkins CA, Singh KB.

BMC Genomics. 2011 Oct 21;12:521. doi: 10.1186/1471-2164-12-521.

20.

Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity, and stealth pathogenesis.

Goodwin SB, M'barek SB, Dhillon B, Wittenberg AH, Crane CF, Hane JK, Foster AJ, Van der Lee TA, Grimwood J, Aerts A, Antoniw J, Bailey A, Bluhm B, Bowler J, Bristow J, van der Burgt A, Canto-Canché B, Churchill AC, Conde-Ferràez L, Cools HJ, Coutinho PM, Csukai M, Dehal P, De Wit P, Donzelli B, van de Geest HC, van Ham RC, Hammond-Kosack KE, Henrissat B, Kilian A, Kobayashi AK, Koopmann E, Kourmpetis Y, Kuzniar A, Lindquist E, Lombard V, Maliepaard C, Martins N, Mehrabi R, Nap JP, Ponomarenko A, Rudd JJ, Salamov A, Schmutz J, Schouten HJ, Shapiro H, Stergiopoulos I, Torriani SF, Tu H, de Vries RP, Waalwijk C, Ware SB, Wiebenga A, Zwiers LH, Oliver RP, Grigoriev IV, Kema GH.

PLoS Genet. 2011 Jun;7(6):e1002070. doi: 10.1371/journal.pgen.1002070. Epub 2011 Jun 9.

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