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Items: 1 to 20 of 184

1.

Quantitative Profiling Identifies Potential Regulatory Proteins Involved in Development from Dauer Stage to L4 Stage in Caenorhabditis elegans.

Kim S, Lee HJ, Hahm JH, Jeong SK, Park DH, Hancock WS, Paik YK.

J Proteome Res. 2016 Feb 5;15(2):531-9. doi: 10.1021/acs.jproteome.5b00884. Epub 2016 Jan 21.

PMID:
26751275
2.

Systems Proteomics View of the Endogenous Human Claudin Protein Family.

Liu F, Koval M, Ranganathan S, Fanayan S, Hancock WS, Lundberg EK, Beavis RC, Lane L, Duek P, McQuade L, Kelleher NL, Baker MS.

J Proteome Res. 2016 Feb 5;15(2):339-59. doi: 10.1021/acs.jproteome.5b00769. Epub 2016 Jan 12.

PMID:
26680015
3.

Integrated Proteomic and Genomic Analysis of Gastric Cancer Patient Tissues.

Yan JF, Kim H, Jeong SK, Lee HJ, Sethi MK, Lee LY, Beavis RC, Im H, Snyder MP, Hofree M, Ideker T, Wu SL, Paik YK, Fanayan S, Hancock WS.

J Proteome Res. 2015 Dec 4;14(12):4995-5006. doi: 10.1021/acs.jproteome.5b00827. Epub 2015 Oct 20.

PMID:
26435392
4.

Recent Advances in the Chromosome-Centric Human Proteome Project: Missing Proteins in the Spot Light.

Paik YK, Omenn GS, Overall CM, Deutsch EW, Hancock WS.

J Proteome Res. 2015 Sep 4;14(9):3409-14. doi: 10.1021/acs.jproteome.5b00785. No abstract available.

PMID:
26337862
5.

Combination of Multiple Spectral Libraries Improves the Current Search Methods Used to Identify Missing Proteins in the Chromosome-Centric Human Proteome Project.

Cho JY, Lee HJ, Jeong SK, Kim KY, Kwon KH, Yoo JS, Omenn GS, Baker MS, Hancock WS, Paik YK.

J Proteome Res. 2015 Dec 4;14(12):4959-66. doi: 10.1021/acs.jproteome.5b00578. Epub 2015 Sep 14.

PMID:
26330117
6.

GenomewidePDB 2.0: A Newly Upgraded Versatile Proteogenomic Database for the Chromosome-Centric Human Proteome Project.

Jeong SK, Hancock WS, Paik YK.

J Proteome Res. 2015 Sep 4;14(9):3710-9. doi: 10.1021/acs.jproteome.5b00541. Epub 2015 Aug 19.

PMID:
26272709
7.

In-depth N-glycome profiling of paired colorectal cancer and non-tumorigenic tissues reveals cancer-, stage- and EGFR-specific protein N-glycosylation.

Sethi MK, Kim H, Park CK, Baker MS, Paik YK, Packer NH, Hancock WS, Fanayan S, Thaysen-Andersen M.

Glycobiology. 2015 Oct;25(10):1064-78. doi: 10.1093/glycob/cwv042. Epub 2015 Jun 17.

PMID:
26085185
8.

Quest for Missing Proteins: Update 2015 on Chromosome-Centric Human Proteome Project.

Horvatovich P, Lundberg EK, Chen YJ, Sung TY, He F, Nice EC, Goode RJ, Yu S, Ranganathan S, Baker MS, Domont GB, Velasquez E, Li D, Liu S, Wang Q, He QY, Menon R, Guan Y, Corrales FJ, Segura V, Casal JI, Pascual-Montano A, Albar JP, Fuentes M, Gonzalez-Gonzalez M, Diez P, Ibarrola N, Degano RM, Mohammed Y, Borchers CH, Urbani A, Soggiu A, Yamamoto T, Salekdeh GH, Archakov A, Ponomarenko E, Lisitsa A, Lichti CF, Mostovenko E, Kroes RA, Rezeli M, Végvári Á, Fehniger TE, Bischoff R, Vizcaíno JA, Deutsch EW, Lane L, Nilsson CL, Marko-Varga G, Omenn GS, Jeong SK, Lim JS, Paik YK, Hancock WS.

J Proteome Res. 2015 Sep 4;14(9):3415-31. doi: 10.1021/pr5013009. Epub 2015 Jul 23.

PMID:
26076068
9.

Quantitative proteomic analysis of paired colorectal cancer and non-tumorigenic tissues reveals signature proteins and perturbed pathways involved in CRC progression and metastasis.

Sethi MK, Thaysen-Andersen M, Kim H, Park CK, Baker MS, Packer NH, Paik YK, Hancock WS, Fanayan S.

J Proteomics. 2015 Aug 3;126:54-67. doi: 10.1016/j.jprot.2015.05.037. Epub 2015 Jun 6.

PMID:
26054784
10.

Clusterin glycopeptide variant characterization reveals significant site-specific glycan changes in the plasma of clear cell renal cell carcinoma.

Gbormittah FO, Bones J, Hincapie M, Tousi F, Hancock WS, Iliopoulos O.

J Proteome Res. 2015 Jun 5;14(6):2425-36. doi: 10.1021/pr501104j. Epub 2015 May 11.

PMID:
25855029
11.
12.

Use of ENCODE resources to characterize novel proteoforms and missing proteins in the human proteome.

Nilsson CL, Mostovenko E, Lichti CF, Ruggles K, Fenyö D, Rosenbloom KR, Hancock WS, Paik YK, Omenn GS, LaBaer J, Kroes RA, Uhlén M, Hober S, Végvári Á, Andrén PE, Sulman EP, Lang FF, Fuentes M, Carlsohn E, Emmett MR, Moskal JR, Berven FS, Fehniger TE, Marko-Varga G.

J Proteome Res. 2015 Feb 6;14(2):603-8. doi: 10.1021/pr500564q. Epub 2014 Nov 26.

PMID:
25369122
13.

Identification of novel glycans with disialylated structures in α3 integrin from mouse kidney cells with the phenotype of polycystic kidney disease.

Zhang AF, Wu SL, Jung Y, Qin S, Hancock WS, Kreidberg JA.

J Proteome Res. 2014 Nov 7;13(11):4901-9. doi: 10.1021/pr5009702. Epub 2014 Oct 15.

PMID:
25300029
14.

Comprehensive N-glycome profiling of cultured human epithelial breast cells identifies unique secretome N-glycosylation signatures enabling tumorigenic subtype classification.

Lee LY, Thaysen-Andersen M, Baker MS, Packer NH, Hancock WS, Fanayan S.

J Proteome Res. 2014 Nov 7;13(11):4783-95. doi: 10.1021/pr500331m. Epub 2014 Sep 11.

PMID:
25210975
15.

Comparative studies of the proteome, glycoproteome, and N-glycome of clear cell renal cell carcinoma plasma before and after curative nephrectomy.

Gbormittah FO, Lee LY, Taylor K, Hancock WS, Iliopoulos O.

J Proteome Res. 2014 Nov 7;13(11):4889-900. doi: 10.1021/pr500591e. Epub 2014 Sep 10.

16.

Identification of human complement factor B as a novel biomarker candidate for pancreatic ductal adenocarcinoma.

Lee MJ, Na K, Jeong SK, Lim JS, Kim SA, Lee MJ, Song SY, Kim H, Hancock WS, Paik YK.

J Proteome Res. 2014 Nov 7;13(11):4878-88. doi: 10.1021/pr5002719. Epub 2014 Aug 8.

PMID:
25057901
17.

Functional annotation of proteome encoded by human chromosome 22.

Pinto SM, Manda SS, Kim MS, Taylor K, Selvan LD, Balakrishnan L, Subbannayya T, Yan F, Prasad TS, Gowda H, Lee C, Hancock WS, Pandey A.

J Proteome Res. 2014 Jun 6;13(6):2749-60. doi: 10.1021/pr401169d. Epub 2014 Apr 29.

18.

Abundance-ratio-based semiquantitative analysis of site-specific N-linked glycopeptides present in the plasma of hepatocellular carcinoma patients.

Lee HJ, Cha HJ, Lim JS, Lee SH, Song SY, Kim H, Hancock WS, Yoo JS, Paik YK.

J Proteome Res. 2014 May 2;13(5):2328-38. doi: 10.1021/pr4011519. Epub 2014 Apr 4.

PMID:
24628331
19.

Genome-wide proteomics, Chromosome-Centric Human Proteome Project (C-HPP), part II.

Paik YK, Omenn GS, Thongboonkerd V, Marko-Varga G, Hancock WS.

J Proteome Res. 2014 Jan 3;13(1):1-4. doi: 10.1021/pr4011958. Epub 2013 Dec 16. No abstract available.

PMID:
24328071
20.

Protannotator: a semiautomated pipeline for chromosome-wise functional annotation of the "missing" human proteome.

Islam MT, Garg G, Hancock WS, Risk BA, Baker MS, Ranganathan S.

J Proteome Res. 2014 Jan 3;13(1):76-83. doi: 10.1021/pr400794x. Epub 2013 Dec 13.

PMID:
24313344
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