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Items: 1 to 20 of 95

1.

Not So Simple After All: Bacteria, Their Population Genetics, and Recombination.

Hanage WP.

Cold Spring Harb Perspect Biol. 2016 Apr 18. pii: a018069. doi: 10.1101/cshperspect.a018069. [Epub ahead of print]

PMID:
27091940
2.

The impact of host metapopulation structure on the population genetics of colonizing bacteria.

Numminen E, Gutmann M, Shubin M, Marttinen P, Méric G, van Schaik W, Coque TM, Baquero F, Willems RJ, Sheppard SK, Feil EJ, Hanage WP, Corander J.

J Theor Biol. 2016 May 7;396:53-62. doi: 10.1016/j.jtbi.2016.02.019. Epub 2016 Feb 23.

PMID:
26916623
3.

Interim results of an ecological experiment - Conjugate vaccination against the pneumococcus and serotype replacement.

Hausdorff WP, Hanage WP.

Hum Vaccin Immunother. 2016 Feb;12(2):358-74. doi: 10.1080/21645515.2015.1118593.

PMID:
26905681
4.

Identifying the effect of patient sharing on between-hospital genetic differentiation of methicillin-resistant Staphylococcus aureus.

Chang HH, Dordel J, Donker T, Worby CJ, Feil EJ, Hanage WP, Bentley SD, Huang SS, Lipsitch M.

Genome Med. 2016 Feb 13;8(1):18. doi: 10.1186/s13073-016-0274-3.

5.

Impact of Host Heterogeneity on the Efficacy of Interventions to Reduce Staphylococcus aureus Carriage.

Chang Q, Lipsitch M, Hanage WP.

Infect Control Hosp Epidemiol. 2016 Feb;37(2):197-204. doi: 10.1017/ice.2015.269. Epub 2015 Nov 24.

6.

Population genomic datasets describing the post-vaccine evolutionary epidemiology of Streptococcus pneumoniae.

Croucher NJ, Finkelstein JA, Pelton SI, Parkhill J, Bentley SD, Lipsitch M, Hanage WP.

Sci Data. 2015 Oct 27;2:150058. doi: 10.1038/sdata.2015.58. eCollection 2015.

7.

Estimating the hospitalization burden associated with influenza and respiratory syncytial virus in New York City, 2003-2011.

Goldstein E, Greene SK, Olson DR, Hanage WP, Lipsitch M.

Influenza Other Respir Viruses. 2015 Sep;9(5):225-33. doi: 10.1111/irv.12325.

8.

Identification of pneumococcal colonization determinants in the stringent response pathway facilitated by genomic diversity.

Li Y, Croucher NJ, Thompson CM, Trzciński K, Hanage WP, Lipsitch M.

BMC Genomics. 2015 May 9;16:369. doi: 10.1186/s12864-015-1573-6.

9.

Carriage burden, multiple colonization and antibiotic pressure promote emergence of resistant vaccine escape pneumococci.

Mitchell PK, Lipsitch M, Hanage WP.

Philos Trans R Soc Lond B Biol Sci. 2015 Jun 5;370(1670):20140342. doi: 10.1098/rstb.2014.0342.

10.

Ecological Overlap and Horizontal Gene Transfer in Staphylococcus aureus and Staphylococcus epidermidis.

Méric G, Miragaia M, de Been M, Yahara K, Pascoe B, Mageiros L, Mikhail J, Harris LG, Wilkinson TS, Rolo J, Lamble S, Bray JE, Jolley KA, Hanage WP, Bowden R, Maiden MC, Mack D, de Lencastre H, Feil EJ, Corander J, Sheppard SK.

Genome Biol Evol. 2015 Apr 16;7(5):1313-28. doi: 10.1093/gbe/evv066.

11.

Whole-genome sequencing for national surveillance of Shiga toxin-producing Escherichia coli O157.

Dallman TJ, Byrne L, Ashton PM, Cowley LA, Perry NT, Adak G, Petrovska L, Ellis RJ, Elson R, Underwood A, Green J, Hanage WP, Jenkins C, Grant K, Wain J.

Clin Infect Dis. 2015 Aug 1;61(3):305-12. doi: 10.1093/cid/civ318. Epub 2015 Apr 17.

PMID:
25888672
12.

Stability of the pneumococcal population structure in Massachusetts as PCV13 was introduced.

Chang Q, Stevenson AE, Croucher NJ, Lee GM, Pelton SI, Lipsitch M, Finkelstein JA, Hanage WP.

BMC Infect Dis. 2015 Feb 18;15:68. doi: 10.1186/s12879-015-0797-z.

13.

Antibiotics in agriculture and the risk to human health: how worried should we be?

Chang Q, Wang W, Regev-Yochay G, Lipsitch M, Hanage WP.

Evol Appl. 2015 Mar;8(3):240-7. doi: 10.1111/eva.12185. Epub 2014 Aug 2. Review.

14.

Selective and genetic constraints on pneumococcal serotype switching.

Croucher NJ, Kagedan L, Thompson CM, Parkhill J, Bentley SD, Finkelstein JA, Lipsitch M, Hanage WP.

PLoS Genet. 2015 Mar 31;11(3):e1005095. doi: 10.1371/journal.pgen.1005095. eCollection 2015 Mar.

15.

Functional characterization of bacteria isolated from ancient arctic soil exposes diverse resistance mechanisms to modern antibiotics.

Perron GG, Whyte L, Turnbaugh PJ, Goordial J, Hanage WP, Dantas G, Desai MM.

PLoS One. 2015 Mar 25;10(3):e0069533. doi: 10.1371/journal.pone.0069533. eCollection 2015.

16.

Origin and proliferation of multiple-drug resistance in bacterial pathogens.

Chang HH, Cohen T, Grad YH, Hanage WP, O'Brien TF, Lipsitch M.

Microbiol Mol Biol Rev. 2015 Mar;79(1):101-16. doi: 10.1128/MMBR.00039-14. Review.

17.

Global phylogenomic analysis of nonencapsulated Streptococcus pneumoniae reveals a deep-branching classic lineage that is distinct from multiple sporadic lineages.

Hilty M, Wüthrich D, Salter SJ, Engel H, Campbell S, Sá-Leão R, de Lencastre H, Hermans P, Sadowy E, Turner P, Chewapreecha C, Diggle M, Pluschke G, McGee L, Köseoğlu Eser Ö, Low DE, Smith-Vaughan H, Endimiani A, Küffer M, Dupasquier M, Beaudoing E, Weber J, Bruggmann R, Hanage WP, Parkhill J, Hathaway LJ, Mühlemann K, Bentley SD.

Genome Biol Evol. 2014 Dec 4;6(12):3281-94. doi: 10.1093/gbe/evu263.

18.

Mechanisms of genome evolution of Streptococcus.

Andam CP, Hanage WP.

Infect Genet Evol. 2015 Jul;33:334-42. doi: 10.1016/j.meegid.2014.11.007. Epub 2014 Nov 13. Review.

19.

Diversification of bacterial genome content through distinct mechanisms over different timescales.

Croucher NJ, Coupland PG, Stevenson AE, Callendrello A, Bentley SD, Hanage WP.

Nat Commun. 2014 Nov 19;5:5471. doi: 10.1038/ncomms6471.

20.

The distribution of pairwise genetic distances: a tool for investigating disease transmission.

Worby CJ, Chang HH, Hanage WP, Lipsitch M.

Genetics. 2014 Dec;198(4):1395-404. doi: 10.1534/genetics.114.171538. Epub 2014 Oct 13.

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