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Results: 1 to 20 of 42

1.

Semiautomated correlative 3D electron microscopy of in vivo-imaged axons and dendrites.

Maco B, Cantoni M, Holtmaat A, Kreshuk A, Hamprecht FA, Knott GW.

Nat Protoc. 2014 Jun;9(6):1354-66. doi: 10.1038/nprot.2014.101. Epub 2014 May 15.

PMID:
24833174
[PubMed - in process]
2.

SimpleSTORM: a fast, self-calibrating reconstruction algorithm for localization microscopy.

Köthe U, Herrmannsdörfer F, Kats I, Hamprecht FA.

Histochem Cell Biol. 2014 Jun;141(6):613-27. doi: 10.1007/s00418-014-1211-4. Epub 2014 Apr 11.

PMID:
24722686
[PubMed - in process]
3.

Active structured learning for cell tracking: algorithm, framework, and usability.

Lou X, Schiegg M, Hamprecht FA.

IEEE Trans Med Imaging. 2014 Apr;33(4):849-60. doi: 10.1109/TMI.2013.2296937.

PMID:
24710154
[PubMed - in process]
4.

Hexicon 2: automated processing of hydrogen-deuterium exchange mass spectrometry data with improved deuteration distribution estimation.

Lindner R, Lou X, Reinstein J, Shoeman RL, Hamprecht FA, Winkler A.

J Am Soc Mass Spectrom. 2014 Jun;25(6):1018-28. doi: 10.1007/s13361-014-0850-y. Epub 2014 Mar 28.

PMID:
24676893
[PubMed - in process]
Free PMC Article
5.

Learning to segment neurons with non-local quality measures.

Kroeger T, Mikula S, Denk W, Koethe U, Hamprecht FA.

Med Image Comput Comput Assist Interv. 2013;16(Pt 2):419-27.

PMID:
24579168
[PubMed - indexed for MEDLINE]
6.

Automated detection of synapses in serial section transmission electron microscopy image stacks.

Kreshuk A, Koethe U, Pax E, Bock DD, Hamprecht FA.

PLoS One. 2014 Feb 6;9(2):e87351. doi: 10.1371/journal.pone.0087351. eCollection 2014.

PMID:
24516550
[PubMed - in process]
Free PMC Article
7.

Automated processing of zebrafish imaging data: a survey.

Mikut R, Dickmeis T, Driever W, Geurts P, Hamprecht FA, Kausler BX, Ledesma-Carbayo MJ, Marée R, Mikula K, Pantazis P, Ronneberger O, Santos A, Stotzka R, Strähle U, Peyriéras N.

Zebrafish. 2013 Sep;10(3):401-21. doi: 10.1089/zeb.2013.0886. Epub 2013 Jun 12. Review.

PMID:
23758125
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Correlative in vivo 2 photon and focused ion beam scanning electron microscopy of cortical neurons.

Maco B, Holtmaat A, Cantoni M, Kreshuk A, Straehle CN, Hamprecht FA, Knott GW.

PLoS One. 2013;8(2):e57405. doi: 10.1371/journal.pone.0057405. Epub 2013 Feb 28.

PMID:
23468982
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Active learning for convenient annotation and classification of secondary ion mass spectrometry images.

Hanselmann M, Röder J, Köthe U, Renard BY, Heeren RM, Hamprecht FA.

Anal Chem. 2013 Jan 2;85(1):147-55. doi: 10.1021/ac3023313. Epub 2012 Dec 13.

PMID:
23157438
[PubMed - indexed for MEDLINE]
10.

Automated vs. manual pattern recognition of 3D (1)H MRSI data of patients with prostate cancer.

Zechmann CM, Menze BH, Kelm BM, Zamecnik P, Ikinger U, Giesel FL, Thieke C, Delorme S, Hamprecht FA, Bachert P.

Acad Radiol. 2012 Jun;19(6):675-84. doi: 10.1016/j.acra.2012.02.014.

PMID:
22578226
[PubMed - indexed for MEDLINE]
11.

One plus one makes three (for social networks).

Horvát EÁ, Hanselmann M, Hamprecht FA, Zweig KA.

PLoS One. 2012;7(4):e34740. doi: 10.1371/journal.pone.0034740. Epub 2012 Apr 6. Erratum in: PLoS One. 2012:7(4): doi/10.1371/annotation/c2a07195-0843-4d98-a220-b1c5b77a7e1a. Horvát, Emöke-Ágnes [corrected to Horvát, Emőke-Ágnes].

PMID:
22493713
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Overcoming species boundaries in peptide identification with Bayesian information criterion-driven error-tolerant peptide search (BICEPS).

Renard BY, Xu B, Kirchner M, Zickmann F, Winter D, Korten S, Brattig NW, Tzur A, Hamprecht FA, Steen H.

Mol Cell Proteomics. 2012 Jul;11(7):M111.014167. doi: 10.1074/mcp.M111.014167. Epub 2012 Apr 6.

PMID:
22493179
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

3D segmentation of SBFSEM images of neuropil by a graphical model over supervoxel boundaries.

Andres B, Koethe U, Kroeger T, Helmstaedter M, Briggman KL, Denk W, Hamprecht FA.

Med Image Anal. 2012 May;16(4):796-805. doi: 10.1016/j.media.2011.11.004. Epub 2011 Dec 19.

PMID:
22374536
[PubMed - indexed for MEDLINE]
14.

Automated detection and segmentation of synaptic contacts in nearly isotropic serial electron microscopy images.

Kreshuk A, Straehle CN, Sommer C, Koethe U, Cantoni M, Knott G, Hamprecht FA.

PLoS One. 2011;6(10):e24899. doi: 10.1371/journal.pone.0024899. Epub 2011 Oct 21.

PMID:
22031814
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Carving: scalable interactive segmentation of neural volume electron microscopy images.

Straehle CN, Köthe U, Knott G, Hamprecht FA.

Med Image Comput Comput Assist Interv. 2011;14(Pt 1):653-60.

PMID:
22003674
[PubMed - indexed for MEDLINE]
16.

Visualizing a homogeneous blend in bulk heterojunction polymer solar cells by analytical electron microscopy.

Pfannmöller M, Flügge H, Benner G, Wacker I, Sommer C, Hanselmann M, Schmale S, Schmidt H, Hamprecht FA, Rabe T, Kowalsky W, Schröder RR.

Nano Lett. 2011 Aug 10;11(8):3099-107. doi: 10.1021/nl201078t. Epub 2011 Jul 25.

PMID:
21770452
[PubMed - indexed for MEDLINE]
17.

Using spatial prior knowledge in the spectral fitting of MRS images.

Kelm BM, Kaster FO, Henning A, Weber MA, Bachert P, Boesiger P, Hamprecht FA, Menze BH.

NMR Biomed. 2012 Jan;25(1):1-13. doi: 10.1002/nbm.1704. Epub 2011 Apr 28.

PMID:
21538636
[PubMed - indexed for MEDLINE]
18.

SIMA: simultaneous multiple alignment of LC/MS peak lists.

Voss B, Hanselmann M, Renard BY, Lindner MS, Köthe U, Kirchner M, Hamprecht FA.

Bioinformatics. 2011 Apr 1;27(7):987-93. doi: 10.1093/bioinformatics/btr051. Epub 2011 Feb 3.

PMID:
21296750
[PubMed - indexed for MEDLINE]
Free Article
19.

Multimodal medical image analysis: from visualization to disease modeling.

Menze BH, Hamprecht FA.

Z Med Phys. 2011;21(1):1. doi: 10.1016/j.zemedi.2010.12.002. Epub 2011 Feb 1. No abstract available.

PMID:
21288704
[PubMed - indexed for MEDLINE]
20.

Estimating the confidence of peptide identifications without decoy databases.

Renard BY, Timm W, Kirchner M, Steen JA, Hamprecht FA, Steen H.

Anal Chem. 2010 Jun 1;82(11):4314-8. doi: 10.1021/ac902892j.

PMID:
20455556
[PubMed - indexed for MEDLINE]

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