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Items: 1 to 20 of 50

1.

Three-dimensional immersive virtual reality for studying cellular compartments in 3D models from EM preparations of neural tissues.

Calì C, Baghabra J, Boges DJ, Holst GR, Kreshuk A, Hamprecht FA, Srinivasan M, Lehväslaiho H, Magistretti PJ.

J Comp Neurol. 2016 Jan 1;524(1):Spc1. doi: 10.1002/cne.23935.

PMID:
26599697
2.

Automated tracing of myelinated axons and detection of the nodes of Ranvier in serial images of peripheral nerves.

Kreshuk A, Walecki R, Koethe U, Gierthmuehlen M, Plachta D, Genoud C, Haastert-Talini K, Hamprecht FA.

J Microsc. 2015 Aug;259(2):143-54. doi: 10.1111/jmi.12266. Epub 2015 Jun 12.

PMID:
26191646
3.

Three-dimensional immersive virtual reality for studying cellular compartments in 3D models from EM preparations of neural tissues.

Calì C, Baghabra J, Boges DJ, Holst GR, Kreshuk A, Hamprecht FA, Srinivasan M, Lehväslaiho H, Magistretti PJ.

J Comp Neurol. 2016 Jan 1;524(1):23-38. doi: 10.1002/cne.23852. Epub 2015 Aug 11.

PMID:
26179415
4.

Empowering multiple instance histopathology cancer diagnosis by cell graphs.

Kandemir M, Zhang C, Hamprecht FA.

Med Image Comput Comput Assist Interv. 2014;17(Pt 2):228-35.

PMID:
25485383
5.

Event detection by feature unpredictability in phase-contrast videos of cell cultures.

Kandemir M, Rubio JC, Schmidt U, Wojek C, Welbl J, Ommer B, Hamprecht FA.

Med Image Comput Comput Assist Interv. 2014;17(Pt 2):154-61.

PMID:
25485374
6.

Computer-aided diagnosis from weak supervision: a benchmarking study.

Kandemir M, Hamprecht FA.

Comput Med Imaging Graph. 2015 Jun;42:44-50. doi: 10.1016/j.compmedimag.2014.11.010. Epub 2014 Nov 20.

PMID:
25475486
7.

Graphical model for joint segmentation and tracking of multiple dividing cells.

Schiegg M, Hanslovsky P, Haubold C, Koethe U, Hufnagel L, Hamprecht FA.

Bioinformatics. 2015 Mar 15;31(6):948-56. doi: 10.1093/bioinformatics/btu764. Epub 2014 Nov 17.

PMID:
25406328
8.

Cell detection and segmentation using correlation clustering.

Zhang C, Yarkony J, Hamprecht FA.

Med Image Comput Comput Assist Interv. 2014;17(Pt 1):9-16.

PMID:
25333095
9.

Semiautomated correlative 3D electron microscopy of in vivo-imaged axons and dendrites.

Maco B, Cantoni M, Holtmaat A, Kreshuk A, Hamprecht FA, Knott GW.

Nat Protoc. 2014;9(6):1354-66. doi: 10.1038/nprot.2014.101. Epub 2014 May 15.

PMID:
24833174
10.

SimpleSTORM: a fast, self-calibrating reconstruction algorithm for localization microscopy.

Köthe U, Herrmannsdörfer F, Kats I, Hamprecht FA.

Histochem Cell Biol. 2014 Jun;141(6):613-27. doi: 10.1007/s00418-014-1211-4. Epub 2014 Apr 11.

PMID:
24722686
11.

Active structured learning for cell tracking: algorithm, framework, and usability.

Lou X, Schiegg M, Hamprecht FA.

IEEE Trans Med Imaging. 2014 Apr;33(4):849-60. doi: 10.1109/TMI.2013.2296937.

PMID:
24710154
12.

Hexicon 2: automated processing of hydrogen-deuterium exchange mass spectrometry data with improved deuteration distribution estimation.

Lindner R, Lou X, Reinstein J, Shoeman RL, Hamprecht FA, Winkler A.

J Am Soc Mass Spectrom. 2014 Jun;25(6):1018-28. doi: 10.1007/s13361-014-0850-y. Epub 2014 Mar 28.

13.

Learning to segment neurons with non-local quality measures.

Kroeger T, Mikula S, Denk W, Koethe U, Hamprecht FA.

Med Image Comput Comput Assist Interv. 2013;16(Pt 2):419-27.

PMID:
24579168
14.

Automated detection of synapses in serial section transmission electron microscopy image stacks.

Kreshuk A, Koethe U, Pax E, Bock DD, Hamprecht FA.

PLoS One. 2014 Feb 6;9(2):e87351. doi: 10.1371/journal.pone.0087351. eCollection 2014.

15.

Automated processing of zebrafish imaging data: a survey.

Mikut R, Dickmeis T, Driever W, Geurts P, Hamprecht FA, Kausler BX, Ledesma-Carbayo MJ, Marée R, Mikula K, Pantazis P, Ronneberger O, Santos A, Stotzka R, Strähle U, Peyriéras N.

Zebrafish. 2013 Sep;10(3):401-21. doi: 10.1089/zeb.2013.0886. Epub 2013 Jun 12. Review.

16.

Correlative in vivo 2 photon and focused ion beam scanning electron microscopy of cortical neurons.

Maco B, Holtmaat A, Cantoni M, Kreshuk A, Straehle CN, Hamprecht FA, Knott GW.

PLoS One. 2013;8(2):e57405. doi: 10.1371/journal.pone.0057405. Epub 2013 Feb 28.

17.

Active learning for convenient annotation and classification of secondary ion mass spectrometry images.

Hanselmann M, Röder J, Köthe U, Renard BY, Heeren RM, Hamprecht FA.

Anal Chem. 2013 Jan 2;85(1):147-55. doi: 10.1021/ac3023313. Epub 2012 Dec 13.

PMID:
23157438
18.

Automated vs. manual pattern recognition of 3D (1)H MRSI data of patients with prostate cancer.

Zechmann CM, Menze BH, Kelm BM, Zamecnik P, Ikinger U, Giesel FL, Thieke C, Delorme S, Hamprecht FA, Bachert P.

Acad Radiol. 2012 Jun;19(6):675-84. doi: 10.1016/j.acra.2012.02.014.

PMID:
22578226
19.

One plus one makes three (for social networks).

Horvát EÁ, Hanselmann M, Hamprecht FA, Zweig KA.

PLoS One. 2012;7(4):e34740. doi: 10.1371/journal.pone.0034740. Epub 2012 Apr 6. Erratum in: PLoS One. 2012:7(4): doi/10.1371/annotation/c2a07195-0843-4d98-a220-b1c5b77a7e1a. Horvát, Emöke-Ágnes [corrected to Horvát, Emőke-Ágnes].

20.

Overcoming species boundaries in peptide identification with Bayesian information criterion-driven error-tolerant peptide search (BICEPS).

Renard BY, Xu B, Kirchner M, Zickmann F, Winter D, Korten S, Brattig NW, Tzur A, Hamprecht FA, Steen H.

Mol Cell Proteomics. 2012 Jul;11(7):M111.014167. doi: 10.1074/mcp.M111.014167. Epub 2012 Apr 6.

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