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Items: 10


diArk--the database for eukaryotic genome and transcriptome assemblies in 2014.

Kollmar M, Kollmar L, Hammesfahr B, Simm D.

Nucleic Acids Res. 2015 Jan;43(Database issue):D1107-12. doi: 10.1093/nar/gku990. Epub 2014 Nov 6.


ShereKhan--calculating exchange parameters in relaxation dispersion data from CPMG experiments.

Mazur A, Hammesfahr B, Griesinger C, Lee D, Kollmar M.

Bioinformatics. 2013 Jul 15;29(14):1819-20. doi: 10.1093/bioinformatics/btt286. Epub 2013 May 21.


WebScipio: Reconstructing alternative splice variants of eukaryotic proteins.

Hatje K, Hammesfahr B, Kollmar M.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W504-9. doi: 10.1093/nar/gkt398. Epub 2013 May 15.


GenePainter: a fast tool for aligning gene structures of eukaryotic protein families, visualizing the alignments and mapping gene structures onto protein structures.

Hammesfahr B, Odronitz F, Mühlhausen S, Waack S, Kollmar M.

BMC Bioinformatics. 2013 Mar 4;14:77. doi: 10.1186/1471-2105-14-77.


Peakr: simulating solid-state NMR spectra of proteins.

Schneider R, Odronitz F, Hammesfahr B, Hellkamp M, Kollmar M.

Bioinformatics. 2013 May 1;29(9):1134-40. doi: 10.1093/bioinformatics/btt125. Epub 2013 Mar 14.


Evolution of the eukaryotic dynactin complex, the activator of cytoplasmic dynein.

Hammesfahr B, Kollmar M.

BMC Evol Biol. 2012 Jun 22;12:95. doi: 10.1186/1471-2148-12-95.


diArk 2.0 provides detailed analyses of the ever increasing eukaryotic genome sequencing data.

Hammesfahr B, Odronitz F, Hellkamp M, Kollmar M.

BMC Res Notes. 2011 Sep 9;4:338. doi: 10.1186/1756-0500-4-338.


Cross-species protein sequence and gene structure prediction with fine-tuned Webscipio 2.0 and Scipio.

Hatje K, Keller O, Hammesfahr B, Pillmann H, Waack S, Kollmar M.

BMC Res Notes. 2011 Jul 28;4:265. doi: 10.1186/1756-0500-4-265.


Predicting mutually exclusive spliced exons based on exon length, splice site and reading frame conservation, and exon sequence homology.

Pillmann H, Hatje K, Odronitz F, Hammesfahr B, Kollmar M.

BMC Bioinformatics. 2011 Jun 30;12:270. doi: 10.1186/1471-2105-12-270.

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