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Items: 1 to 20 of 70

1.

Applying a free-water correction to diffusion imaging data uncovers stress-related neural pathology in depression.

Bergamino M, Pasternak O, Farmer M, Shenton ME, Hamilton JP.

Neuroimage Clin. 2015 Nov 30;10:336-42. doi: 10.1016/j.nicl.2015.11.020. eCollection 2016.

2.

Haplotype-Phased Synthetic Long Reads from Short-Read Sequencing.

Stapleton JA, Kim J, Hamilton JP, Wu M, Irber LC, Maddamsetti R, Briney B, Newton L, Burton DR, Brown CT, Chan C, Buell CR, Whitehead TA.

PLoS One. 2016 Jan 20;11(1):e0147229. doi: 10.1371/journal.pone.0147229. eCollection 2016.

3.

Genome Reduction Uncovers a Large Dispensable Genome and Adaptive Role for Copy Number Variation in Asexually Propagated Solanum tuberosum.

Hardigan MA, Crisovan E, Hamilton JP, Kim J, Laimbeer P, Leisner CP, Manrique-Carpintero NC, Newton L, Pham GM, Vaillancourt B, Yang X, Zeng Z, Douches DS, Jiang J, Veilleux RE, Buell CR.

Plant Cell. 2016 Feb;28(2):388-405. doi: 10.1105/tpc.15.00538. Epub 2016 Jan 15.

4.

Nature experience reduces rumination and subgenual prefrontal cortex activation.

Bratman GN, Hamilton JP, Hahn KS, Daily GC, Gross JJ.

Proc Natl Acad Sci U S A. 2015 Jul 14;112(28):8567-72. doi: 10.1073/pnas.1510459112. Epub 2015 Jun 29.

5.

Depressive Rumination, the Default-Mode Network, and the Dark Matter of Clinical Neuroscience.

Hamilton JP, Farmer M, Fogelman P, Gotlib IH.

Biol Psychiatry. 2015 Aug 15;78(4):224-30. doi: 10.1016/j.biopsych.2015.02.020. Epub 2015 Feb 24. Review.

6.

Pseudogene INTS6P1 regulates its cognate gene INTS6 through competitive binding of miR-17-5p in hepatocellular carcinoma.

Peng H, Ishida M, Li L, Saito A, Kamiya A, Hamilton JP, Fu R, Olaru AV, An F, Popescu I, Iacob R, Dima S, Alexandrescu ST, Grigorie R, Nastase A, Berindan-Neagoe I, Tomuleasa C, Graur F, Zaharia F, Torbenson MS, Mezey E, Lu M, Selaru FM.

Oncotarget. 2015 Mar 20;6(8):5666-77.

7.

CHARACTERIZING WHITE MATTER CONNECTIVITY IN MAJOR DEPRESSIVE DISORDER: AUTOMATED FIBER QUANTIFICATION AND MAXIMUM DENSITY PATHS.

Sacchet MD, Prasad G, Foland-Ross LC, Joshi SH, Hamilton JP, Thompson PM, Gotlib IH.

Proc IEEE Int Symp Biomed Imaging. 2014 Apr 29;11:592-595.

8.

Differential methylation of the promoter and first exon of the RASSF1A gene in hepatocarcinogenesis.

Jain S, Xie L, Boldbaatar B, Lin SY, Hamilton JP, Meltzer SJ, Chen SH, Hu CT, Block TM, Song W, Su YH.

Hepatol Res. 2015 Nov;45(11):1110-23. doi: 10.1111/hepr.12449. Epub 2014 Dec 9.

9.

Structural abnormality of the corticospinal tract in major depressive disorder.

Sacchet MD, Prasad G, Foland-Ross LC, Joshi SH, Hamilton JP, Thompson PM, Gotlib IH.

Biol Mood Anxiety Disord. 2014 Sep 10;4:8. doi: 10.1186/2045-5380-4-8. eCollection 2014.

10.

A root-expressed L-phenylalanine:4-hydroxyphenylpyruvate aminotransferase is required for tropane alkaloid biosynthesis in Atropa belladonna.

Bedewitz MA, Góngora-Castillo E, Uebler JB, Gonzales-Vigil E, Wiegert-Rininger KE, Childs KL, Hamilton JP, Vaillancourt B, Yeo YS, Chappell J, DellaPenna D, Jones AD, Buell CR, Barry CS.

Plant Cell. 2014 Sep;26(9):3745-62. doi: 10.1105/tpc.114.130534. Epub 2014 Sep 16.

11.

Distinctive and common neural underpinnings of major depression, social anxiety, and their comorbidity.

Hamilton JP, Chen MC, Waugh CE, Joormann J, Gotlib IH.

Soc Cogn Affect Neurosci. 2015 Apr;10(4):552-60. doi: 10.1093/scan/nsu084. Epub 2014 Jul 17.

12.

Timber! Felling the loblolly pine genome.

Hamilton JP, Buell CR.

Genome Biol. 2014 Mar 31;15(3):111. doi: 10.1186/gb4170.

13.

Effects of vitamin D3 stimulation of thioredoxin-interacting protein in hepatocellular carcinoma.

Hamilton JP, Potter JJ, Koganti L, Meltzer SJ, Mezey E.

Hepatol Res. 2014 Dec;44(13):1357-66. doi: 10.1111/hepr.12302. Epub 2014 Mar 25.

14.

Comparative genomics reveals insight into virulence strategies of plant pathogenic oomycetes.

Adhikari BN, Hamilton JP, Zerillo MM, Tisserat N, Lévesque CA, Buell CR.

PLoS One. 2013 Oct 4;8(10):e75072. doi: 10.1371/journal.pone.0075072. eCollection 2013.

15.

Carbohydrate-active enzymes in pythium and their role in plant cell wall and storage polysaccharide degradation.

Zerillo MM, Adhikari BN, Hamilton JP, Buell CR, Lévesque CA, Tisserat N.

PLoS One. 2013 Sep 12;8(9):e72572. doi: 10.1371/journal.pone.0072572. eCollection 2013.

16.

Construction of reference chromosome-scale pseudomolecules for potato: integrating the potato genome with genetic and physical maps.

Sharma SK, Bolser D, de Boer J, Sønderkær M, Amoros W, Carboni MF, D'Ambrosio JM, de la Cruz G, Di Genova A, Douches DS, Eguiluz M, Guo X, Guzman F, Hackett CA, Hamilton JP, Li G, Li Y, Lozano R, Maass A, Marshall D, Martinez D, McLean K, Mejía N, Milne L, Munive S, Nagy I, Ponce O, Ramirez M, Simon R, Thomson SJ, Torres Y, Waugh R, Zhang Z, Huang S, Visser RG, Bachem CW, Sagredo B, Feingold SE, Orjeda G, Veilleux RE, Bonierbale M, Jacobs JM, Milbourne D, Martin DM, Bryan GJ.

G3 (Bethesda). 2013 Nov 6;3(11):2031-47. doi: 10.1534/g3.113.007153.

17.

Anomalous gray matter structural networks in major depressive disorder.

Singh MK, Kesler SR, Hadi Hosseini SM, Kelley RG, Amatya D, Hamilton JP, Chen MC, Gotlib IH.

Biol Psychiatry. 2013 Nov 15;74(10):777-85. doi: 10.1016/j.biopsych.2013.03.005. Epub 2013 Apr 18.

18.

Neural systems approaches to understanding major depressive disorder: an intrinsic functional organization perspective.

Hamilton JP, Chen MC, Gotlib IH.

Neurobiol Dis. 2013 Apr;52:4-11. doi: 10.1016/j.nbd.2012.01.015. Epub 2012 Feb 10. Review.

19.

The neural basis of difficulties disengaging from negative irrelevant material in major depression.

Foland-Ross LC, Hamilton JP, Joormann J, Berman MG, Jonides J, Gotlib IH.

Psychol Sci. 2013 Mar 1;24(3):334-44. doi: 10.1177/0956797612457380. Epub 2013 Jan 17.

20.

Development of transcriptomic resources for interrogating the biosynthesis of monoterpene indole alkaloids in medicinal plant species.

Góngora-Castillo E, Childs KL, Fedewa G, Hamilton JP, Liscombe DK, Magallanes-Lundback M, Mandadi KK, Nims E, Runguphan W, Vaillancourt B, Varbanova-Herde M, Dellapenna D, McKnight TD, O'Connor S, Buell CR.

PLoS One. 2012;7(12):e52506. doi: 10.1371/journal.pone.0052506. Epub 2012 Dec 26.

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