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Items: 14


Fast gap-free enumeration of conformations and sequences for protein design.

Roberts KE, Gainza P, Hallen MA, Donald BR.

Proteins. 2015 Oct;83(10):1859-77. doi: 10.1002/prot.24870. Epub 2015 Aug 24.


Crystal structure, conformational fixation and entry-related interactions of mature ligand-free HIV-1 Env.

Do Kwon Y, Pancera M, Acharya P, Georgiev IS, Crooks ET, Gorman J, Joyce MG, Guttman M, Ma X, Narpala S, Soto C, Terry DS, Yang Y, Zhou T, Ahlsen G, Bailer RT, Chambers M, Chuang GY, Doria-Rose NA, Druz A, Hallen MA, Harned A, Kirys T, Louder MK, O'Dell S, Ofek G, Osawa K, Prabhakaran M, Sastry M, Stewart-Jones GB, Stuckey J, Thomas PV, Tittley T, Williams C, Zhang B, Zhao H, Zhou Z, Donald BR, Lee LK, Zolla-Pazner S, Baxa U, Schön A, Freire E, Shapiro L, Lee KK, Arthos J, Munro JB, Blanchard SC, Mothes W, Binley JM, McDermott AB, Mascola JR, Kwong PD.

Nat Struct Mol Biol. 2015 Jul;22(7):522-31. doi: 10.1038/nsmb.3051. Epub 2015 Jun 22.


Compact representation of continuous energy surfaces for more efficient protein design.

Hallen MA, Gainza P, Donald BR.

J Chem Theory Comput. 2015 May 12;11(5):2292-2306.


Altered nucleotide-microtubule coupling and increased mechanical output by a kinesin mutant.

Liu HL, Hallen MA, Endow SA.

PLoS One. 2012;7(10):e47148. doi: 10.1371/journal.pone.0047148. Epub 2012 Oct 16.


Dead-end elimination with perturbations (DEEPer): a provable protein design algorithm with continuous sidechain and backbone flexibility.

Hallen MA, Keedy DA, Donald BR.

Proteins. 2013 Jan;81(1):18-39. doi: 10.1002/prot.24150. Epub 2012 Sep 18.


Mass spectrometry- and lysine amidination-based protocol for thermodynamic analysis of protein folding and ligand binding interactions.

Xu Y, Falk IN, Hallen MA, Fitzgerald MC.

Anal Chem. 2011 May 1;83(9):3555-62. doi: 10.1021/ac200211t. Epub 2011 Apr 12.


Two-state displacement by the kinesin-14 Ncd stalk.

Hallen MA, Liang ZY, Endow SA.

Biophys Chem. 2011 Mar;154(2-3):56-65. doi: 10.1016/j.bpc.2011.01.001. Epub 2011 Jan 13.


Anastral spindle assembly and γ-tubulin in Drosophila oocytes.

Endow SA, Hallen MA.

BMC Cell Biol. 2011 Jan 5;12:1. doi: 10.1186/1471-2121-12-1.


Anastral spindle assembly: a mathematical model.

Hallen MA, Endow SA.

Biophys J. 2009 Oct 21;97(8):2191-201. doi: 10.1016/j.bpj.2009.08.008.


Expanding the scope of quantitative FRAP analysis.

Hallen MA, Layton AT.

J Theor Biol. 2010 Jan 21;262(2):295-305. doi: 10.1016/j.jtbi.2009.10.020. Epub 2009 Oct 15.


Mature Drosophila meiosis I spindles comprise microtubules of mixed polarity.

Liang ZY, Hallen MA, Endow SA.

Curr Biol. 2009 Jan 27;19(2):163-8. doi: 10.1016/j.cub.2008.12.017.


Ncd motor binding and transport in the spindle.

Hallen MA, Liang ZY, Endow SA.

J Cell Sci. 2008 Nov 15;121(Pt 22):3834-41. doi: 10.1242/jcs.038497. Epub 2008 Oct 28.


Fluorescence recovery kinetic analysis of gamma-tubulin binding to the mitotic spindle.

Hallen MA, Ho J, Yankel CD, Endow SA.

Biophys J. 2008 Sep 15;95(6):3048-58. doi: 10.1529/biophysj.108.134593. Epub 2008 Jun 20. Erratum in: Biophys J. 2009 Jan;96(2):761.


A microtubule-destabilizing kinesin motor regulates spindle length and anchoring in oocytes.

Zou J, Hallen MA, Yankel CD, Endow SA.

J Cell Biol. 2008 Feb 11;180(3):459-66. doi: 10.1083/jcb.200711031. Epub 2008 Feb 4.

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