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Results: 20

1.

An integrative pipeline for multi-modal discovery of disease relationships.

Glicksberg BS, Li L, Cheng WY, Shameer K, Hakenberg J, Castellanos R, Ma M, Shi L, Shah H, Dudley JT, Chen R.

Pac Symp Biocomput. 2015:407-18.

2.

Estimation of glance from EEG for cursor control.

Tan T, Hakenberg JP, Guan C.

Conf Proc IEEE Eng Med Biol Soc. 2013;2013:2919-23. doi: 10.1109/EMBC.2013.6610151.

PMID:
24110338
3.

Literature mining solutions for life science research.

Hakenberg J, Nenadic G, Rebholz-Schuhmann D, Kim JD.

Adv Bioinformatics. 2013;2013:320436. doi: 10.1155/2013/320436. Epub 2013 Jan 8. No abstract available.

4.

A SNPshot of PubMed to associate genetic variants with drugs, diseases, and adverse reactions.

Hakenberg J, Voronov D, Nguyên VH, Liang S, Anwar S, Lumpkin B, Leaman R, Tari L, Baral C.

J Biomed Inform. 2012 Oct;45(5):842-50. doi: 10.1016/j.jbi.2012.04.006. Epub 2012 Apr 30.

5.

The GNAT library for local and remote gene mention normalization.

Hakenberg J, Gerner M, Haeussler M, Solt I, Plake C, Schroeder M, Gonzalez G, Nenadic G, Bergman CM.

Bioinformatics. 2011 Oct 1;27(19):2769-71. doi: 10.1093/bioinformatics/btr455. Epub 2011 Aug 3.

6.

A comprehensive benchmark of kernel methods to extract protein-protein interactions from literature.

Tikk D, Thomas P, Palaga P, Hakenberg J, Leser U.

PLoS Comput Biol. 2010 Jul 1;6:e1000837. doi: 10.1371/journal.pcbi.1000837.

7.

Efficient extraction of protein-protein interactions from full-text articles.

Hakenberg J, Leaman R, Vo NH, Jonnalagadda S, Sullivan R, Miller C, Tari L, Baral C, Gonzalez G.

IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):481-94. doi: 10.1109/TCBB.2010.51.

PMID:
20498514
8.

Synthesis of pharmacokinetic pathways through knowledge acquisition and automated reasoning.

Tari L, Anwar S, Liang S, Hakenberg J, Baral C.

Pac Symp Biocomput. 2010:465-76.

9.

GoGene: gene annotation in the fast lane.

Plake C, Royer L, Winnenburg R, Hakenberg J, Schroeder M.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W300-4. doi: 10.1093/nar/gkp429. Epub 2009 May 22.

10.

Querying parse tree database of Medline text to synthesize user-specific biomolecular networks.

Tari L, Hakenberg J, Gonzalez G, Baral C.

Pac Symp Biocomput. 2009:87-98.

11.

Biomedical word sense disambiguation with ontologies and metadata: automation meets accuracy.

Alexopoulou D, Andreopoulos B, Dietze H, Doms A, Gandon F, Hakenberg J, Khelif K, Schroeder M, Wächter T.

BMC Bioinformatics. 2009 Jan 21;10:28. doi: 10.1186/1471-2105-10-28.

12.

Introducing meta-services for biomedical information extraction.

Leitner F, Krallinger M, Rodriguez-Penagos C, Hakenberg J, Plake C, Kuo CJ, Hsu CN, Tsai RT, Hung HC, Lau WW, Johnson CA, Saetre R, Yoshida K, Chen YH, Kim S, Shin SY, Zhang BT, Baumgartner WA Jr, Hunter L, Haddow B, Matthews M, Wang X, Ruch P, Ehrler F, Ozgür A, Erkan G, Radev DR, Krauthammer M, Luong T, Hoffmann R, Sander C, Valencia A.

Genome Biol. 2008;9 Suppl 2:S6. doi: 10.1186/gb-2008-9-s2-s6. Epub 2008 Sep 1.

13.

Overview of BioCreative II gene normalization.

Morgan AA, Lu Z, Wang X, Cohen AM, Fluck J, Ruch P, Divoli A, Fundel K, Leaman R, Hakenberg J, Sun C, Liu HH, Torres R, Krauthammer M, Lau WW, Liu H, Hsu CN, Schuemie M, Cohen KB, Hirschman L.

Genome Biol. 2008;9 Suppl 2:S3. doi: 10.1186/gb-2008-9-s2-s3. Epub 2008 Sep 1.

14.

Gene mention normalization and interaction extraction with context models and sentence motifs.

Hakenberg J, Plake C, Royer L, Strobelt H, Leser U, Schroeder M.

Genome Biol. 2008;9 Suppl 2:S14. doi: 10.1186/gb-2008-9-s2-s14. Epub 2008 Sep 1.

15.

Inter-species normalization of gene mentions with GNAT.

Hakenberg J, Plake C, Leaman R, Schroeder M, Gonzalez G.

Bioinformatics. 2008 Aug 15;24(16):i126-132. doi: 10.1093/bioinformatics/btn299.

16.

AliBaba: PubMed as a graph.

Plake C, Schiemann T, Pankalla M, Hakenberg J, Leser U.

Bioinformatics. 2006 Oct 1;22(19):2444-5. Epub 2006 Jul 26.

17.

What makes a gene name? Named entity recognition in the biomedical literature.

Leser U, Hakenberg J.

Brief Bioinform. 2005 Dec;6(4):357-69.

18.

Systematic feature evaluation for gene name recognition.

Hakenberg J, Bickel S, Plake C, Brefeld U, Zahn H, Faulstich L, Leser U, Scheffer T.

BMC Bioinformatics. 2005;6 Suppl 1:S9. Epub 2005 May 24.

19.

Finding kinetic parameters using text mining.

Hakenberg J, Schmeier S, Kowald A, Klipp E, Leser U.

OMICS. 2004 Summer;8(2):131-52.

PMID:
15268772
20.

MAPPP: MHC class I antigenic peptide processing prediction.

Hakenberg J, Nussbaum AK, Schild H, Rammensee HG, Kuttler C, Holzhütter HG, Kloetzel PM, Kaufmann SH, Mollenkopf HJ.

Appl Bioinformatics. 2003;2(3):155-8.

PMID:
15130801
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