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Results: 1 to 20 of 81

1.

Exploiting high-throughput cell line drug screening studies to identify candidate therapeutic agents in head and neck cancer.

Nichols AC, Black M, Yoo J, Pinto N, Fernandes A, Haibe-Kains B, Boutros PC, Barrett JW.

BMC Pharmacol Toxicol. 2014 Nov 27;15(1):66. [Epub ahead of print]

PMID:
25428177
[PubMed - as supplied by publisher]
2.

Transfer of clinically relevant gene expression signatures in breast cancer: from Affymetrix microarray to Illumina RNA-Sequencing technology.

Fumagalli D, Blanchet-Cohen A, Brown D, Desmedt C, Gacquer D, Michiels S, Rothé F, Majjaj S, Salgado R, Larsimont D, Ignatiadis M, Maetens M, Piccart M, Detours V, Sotiriou C, Haibe-Kains B.

BMC Genomics. 2014 Nov 21;15(1):1008. [Epub ahead of print]

PMID:
25412710
[PubMed - as supplied by publisher]
Free Article
3.

Gene regulatory networks and their applications: understanding biological and medical problems in terms of networks.

Emmert-Streib F, Dehmer M, Haibe-Kains B.

Front Cell Dev Biol. 2014 Aug 19;2:38. doi: 10.3389/fcell.2014.00038. eCollection 2014. Review.

PMID:
25364745
[PubMed]
Free PMC Article
4.

Untangling statistical and biological models to understand network inference: the need for a genomics network ontology.

Emmert-Streib F, Dehmer M, Haibe-Kains B.

Front Genet. 2014 Aug 29;5:299. doi: 10.3389/fgene.2014.00299. eCollection 2014.

PMID:
25221572
[PubMed]
Free PMC Article
5.

Functional and genetic analysis of the colon cancer network.

Emmert-Streib F, de Matos Simoes R, Glazko G, McDade S, Haibe-Kains B, Holzinger A, Dehmer M, Campbell F.

BMC Bioinformatics. 2014;15 Suppl 6:S6. doi: 10.1186/1471-2105-15-S6-S6. Epub 2014 May 16.

PMID:
25079297
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Quantitative assessment and validation of network inference methods in bioinformatics.

Haibe-Kains B, Emmert-Streib F.

Front Genet. 2014 Jul 16;5:221. doi: 10.3389/fgene.2014.00221. eCollection 2014. No abstract available.

PMID:
25076966
[PubMed]
Free PMC Article
7.

Robust Radiomics feature quantification using semiautomatic volumetric segmentation.

Parmar C, Rios Velazquez E, Leijenaar R, Jermoumi M, Carvalho S, Mak RH, Mitra S, Shankar BU, Kikinis R, Haibe-Kains B, Lambin P, Aerts HJ.

PLoS One. 2014 Jul 15;9(7):e102107. doi: 10.1371/journal.pone.0102107. eCollection 2014.

PMID:
25025374
[PubMed - in process]
Free PMC Article
8.

Enhancing reproducibility in cancer drug screening: how do we move forward?

Hatzis C, Bedard PL, Birkbak NJ, Beck AH, Aerts HJ, Stem DF, Shi L, Clarke R, Quackenbush J, Haibe-Kains B.

Cancer Res. 2014 Aug 1;74(15):4016-23. doi: 10.1158/0008-5472.CAN-14-0725. Epub 2014 Jul 11. Erratum in: Cancer Res. 2014 Sep 15;74(18):5348. Stern, David F [corrected to Stem, David F].

PMID:
25015668
[PubMed - in process]
9.

Relevance of different prior knowledge sources for inferring gene interaction networks.

Olsen C, Bontempi G, Emmert-Streib F, Quackenbush J, Haibe-Kains B.

Front Genet. 2014 Jun 24;5:177. doi: 10.3389/fgene.2014.00177. eCollection 2014.

PMID:
25009552
[PubMed]
Free PMC Article
10.

Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach.

Aerts HJ, Velazquez ER, Leijenaar RT, Parmar C, Grossmann P, Cavalho S, Bussink J, Monshouwer R, Haibe-Kains B, Rietveld D, Hoebers F, Rietbergen MM, Leemans CR, Dekker A, Quackenbush J, Gillies RJ, Lambin P.

Nat Commun. 2014 Jun 3;5:4006. doi: 10.1038/ncomms5006.

PMID:
24892406
[PubMed - in process]
Free PMC Article
11.

Comparative meta-analysis of prognostic gene signatures for late-stage ovarian cancer.

Waldron L, Haibe-Kains B, Culhane AC, Riester M, Ding J, Wang XV, Ahmadifar M, Tyekucheva S, Bernau C, Risch T, Ganzfried BF, Huttenhower C, Birrer M, Parmigiani G.

J Natl Cancer Inst. 2014 Apr 3;106(5). pii: dju049. doi: 10.1093/jnci/dju049. Review.

PMID:
24700801
[PubMed - indexed for MEDLINE]
12.

Inference and validation of predictive gene networks from biomedical literature and gene expression data.

Olsen C, Fleming K, Prendergast N, Rubio R, Emmert-Streib F, Bontempi G, Haibe-Kains B, Quackenbush J.

Genomics. 2014 May-Jun;103(5-6):329-36. doi: 10.1016/j.ygeno.2014.03.004. Epub 2014 Mar 29.

PMID:
24691108
[PubMed - in process]
Free Article
13.

NOTCH2 and FLT3 gene mis-splicings are common events in patients with acute myeloid leukemia (AML): new potential targets in AML.

Adamia S, Bar-Natan M, Haibe-Kains B, Pilarski PM, Bach C, Pevzner S, Calimeri T, Avet-Loiseau H, Lode L, Verselis S, Fox EA, Galinsky I, Mathews S, Dagogo-Jack I, Wadleigh M, Steensma DP, Motyckova G, Deangelo DJ, Quackenbush J, Tenen DG, Stone RM, Griffin JD.

Blood. 2014 May 1;123(18):2816-25. doi: 10.1182/blood-2013-02-481507. Epub 2014 Feb 26.

PMID:
24574459
[PubMed - indexed for MEDLINE]
14.

The gene regulatory network for breast cancer: integrated regulatory landscape of cancer hallmarks.

Emmert-Streib F, de Matos Simoes R, Mullan P, Haibe-Kains B, Dehmer M.

Front Genet. 2014 Feb 3;5:15. doi: 10.3389/fgene.2014.00015. eCollection 2014.

PMID:
24550935
[PubMed]
Free PMC Article
15.

Importance of collection in gene set enrichment analysis of drug response in cancer cell lines.

Bateman AR, El-Hachem N, Beck AH, Aerts HJ, Haibe-Kains B.

Sci Rep. 2014 Feb 13;4:4092. doi: 10.1038/srep04092.

PMID:
24522610
[PubMed - in process]
Free PMC Article
16.

Similarity network fusion for aggregating data types on a genomic scale.

Wang B, Mezlini AM, Demir F, Fiume M, Tu Z, Brudno M, Haibe-Kains B, Goldenberg A.

Nat Methods. 2014 Mar;11(3):333-7. doi: 10.1038/nmeth.2810. Epub 2014 Jan 26.

PMID:
24464287
[PubMed - indexed for MEDLINE]
17.

Network statistics of genetically-driven gene co-expression modules in mouse crosses.

Scott-Boyer MP, Haibe-Kains B, Deschepper CF.

Front Genet. 2013 Dec 26;4:291. doi: 10.3389/fgene.2013.00291. eCollection 2013.

PMID:
24421784
[PubMed]
Free PMC Article
18.

Inconsistency in large pharmacogenomic studies.

Haibe-Kains B, El-Hachem N, Birkbak NJ, Jin AC, Beck AH, Aerts HJ, Quackenbush J.

Nature. 2013 Dec 19;504(7480):389-93. doi: 10.1038/nature12831. Epub 2013 Nov 27.

PMID:
24284626
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

A genome-wide aberrant RNA splicing in patients with acute myeloid leukemia identifies novel potential disease markers and therapeutic targets.

Adamia S, Haibe-Kains B, Pilarski PM, Bar-Natan M, Pevzner S, Avet-Loiseau H, Lode L, Verselis S, Fox EA, Burke J, Galinsky I, Dagogo-Jack I, Wadleigh M, Steensma DP, Motyckova G, Deangelo DJ, Quackenbush J, Stone R, Griffin JD.

Clin Cancer Res. 2014 Mar 1;20(5):1135-45. doi: 10.1158/1078-0432.CCR-13-0956. Epub 2013 Nov 27.

PMID:
24284058
[PubMed - indexed for MEDLINE]
20.

Loss of Pgc-1α expression in aging mouse muscle potentiates glucose intolerance and systemic inflammation.

Sczelecki S, Besse-Patin A, Abboud A, Kleiner S, Laznik-Bogoslavski D, Wrann CD, Ruas JL, Haibe-Kains B, Estall JL.

Am J Physiol Endocrinol Metab. 2014 Jan 15;306(2):E157-67. doi: 10.1152/ajpendo.00578.2013. Epub 2013 Nov 26.

PMID:
24280126
[PubMed - indexed for MEDLINE]

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