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Results: 1 to 20 of 75

1.

Robust radiomics feature quantification using semiautomatic volumetric segmentation.

Parmar C, Rios Velazquez E, Leijenaar R, Jermoumi M, Carvalho S, Mak RH, Mitra S, Shankar BU, Kikinis R, Haibe-Kains B, Lambin P, Aerts HJ.

PLoS One. 2014 Jul 15;9(7):e102107. doi: 10.1371/journal.pone.0102107. eCollection 2014.

PMID:
25025374
[PubMed - in process]
Free PMC Article
2.

Enhancing Reproducibility in Cancer Drug Screening: How Do We Move Forward?

Hatzis C, Bedard PL, Juul Birkbak N, Beck AH, Aerts HJ, Stern DF, Shi L, Clarke R, Quackenbush J, Haibe-Kains B.

Cancer Res. 2014 Jul 11. [Epub ahead of print] Review.

PMID:
25015668
[PubMed - as supplied by publisher]
3.

Relevance of different prior knowledge sources for inferring gene interaction networks.

Olsen C, Bontempi G, Emmert-Streib F, Quackenbush J, Haibe-Kains B.

Front Genet. 2014 Jun 24;5:177. doi: 10.3389/fgene.2014.00177. eCollection 2014.

PMID:
25009552
[PubMed]
Free PMC Article
4.

Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach.

Aerts HJ, Velazquez ER, Leijenaar RT, Parmar C, Grossmann P, Cavalho S, Bussink J, Monshouwer R, Haibe-Kains B, Rietveld D, Hoebers F, Rietbergen MM, Leemans CR, Dekker A, Quackenbush J, Gillies RJ, Lambin P.

Nat Commun. 2014 Jun 3;5:4006. doi: 10.1038/ncomms5006.

PMID:
24892406
[PubMed - in process]
Free PMC Article
5.

Comparative meta-analysis of prognostic gene signatures for late-stage ovarian cancer.

Waldron L, Haibe-Kains B, Culhane AC, Riester M, Ding J, Wang XV, Ahmadifar M, Tyekucheva S, Bernau C, Risch T, Ganzfried BF, Huttenhower C, Birrer M, Parmigiani G.

J Natl Cancer Inst. 2014 Apr 3;106(5). pii: dju049. doi: 10.1093/jnci/dju049. Review.

PMID:
24700801
[PubMed - indexed for MEDLINE]
6.

Inference and validation of predictive gene networks from biomedical literature and gene expression data.

Olsen C, Fleming K, Prendergast N, Rubio R, Emmert-Streib F, Bontempi G, Haibe-Kains B, Quackenbush J.

Genomics. 2014 May-Jun;103(5-6):329-36. doi: 10.1016/j.ygeno.2014.03.004. Epub 2014 Mar 29.

PMID:
24691108
[PubMed - in process]
Free Article
7.

NOTCH2 and FLT3 gene mis-splicings are common events in patients with acute myeloid leukemia (AML): new potential targets in AML.

Adamia S, Bar-Natan M, Haibe-Kains B, Pilarski PM, Bach C, Pevzner S, Calimeri T, Avet-Loiseau H, Lode L, Verselis S, Fox EA, Galinsky I, Mathews S, Dagogo-Jack I, Wadleigh M, Steensma DP, Motyckova G, Deangelo DJ, Quackenbush J, Tenen DG, Stone RM, Griffin JD.

Blood. 2014 May 1;123(18):2816-25. doi: 10.1182/blood-2013-02-481507. Epub 2014 Feb 26.

PMID:
24574459
[PubMed - indexed for MEDLINE]
8.

The gene regulatory network for breast cancer: integrated regulatory landscape of cancer hallmarks.

Emmert-Streib F, de Matos Simoes R, Mullan P, Haibe-Kains B, Dehmer M.

Front Genet. 2014 Feb 3;5:15. doi: 10.3389/fgene.2014.00015. eCollection 2014.

PMID:
24550935
[PubMed]
Free PMC Article
9.

Importance of collection in gene set enrichment analysis of drug response in cancer cell lines.

Bateman AR, El-Hachem N, Beck AH, Aerts HJ, Haibe-Kains B.

Sci Rep. 2014 Feb 13;4:4092. doi: 10.1038/srep04092.

PMID:
24522610
[PubMed - in process]
Free PMC Article
10.

Similarity network fusion for aggregating data types on a genomic scale.

Wang B, Mezlini AM, Demir F, Fiume M, Tu Z, Brudno M, Haibe-Kains B, Goldenberg A.

Nat Methods. 2014 Mar;11(3):333-7. doi: 10.1038/nmeth.2810. Epub 2014 Jan 26.

PMID:
24464287
[PubMed - indexed for MEDLINE]
11.

Network statistics of genetically-driven gene co-expression modules in mouse crosses.

Scott-Boyer MP, Haibe-Kains B, Deschepper CF.

Front Genet. 2013 Dec 26;4:291. doi: 10.3389/fgene.2013.00291. eCollection 2013.

PMID:
24421784
[PubMed]
Free PMC Article
12.

Inconsistency in large pharmacogenomic studies.

Haibe-Kains B, El-Hachem N, Birkbak NJ, Jin AC, Beck AH, Aerts HJ, Quackenbush J.

Nature. 2013 Dec 19;504(7480):389-93. doi: 10.1038/nature12831. Epub 2013 Nov 27.

PMID:
24284626
[PubMed - indexed for MEDLINE]
13.

A genome-wide aberrant RNA splicing in patients with acute myeloid leukemia identifies novel potential disease markers and therapeutic targets.

Adamia S, Haibe-Kains B, Pilarski PM, Bar-Natan M, Pevzner S, Avet-Loiseau H, Lode L, Verselis S, Fox EA, Burke J, Galinsky I, Dagogo-Jack I, Wadleigh M, Steensma DP, Motyckova G, Deangelo DJ, Quackenbush J, Stone R, Griffin JD.

Clin Cancer Res. 2014 Mar 1;20(5):1135-45. doi: 10.1158/1078-0432.CCR-13-0956. Epub 2013 Nov 27.

PMID:
24284058
[PubMed - in process]
14.

Loss of Pgc-1α expression in aging mouse muscle potentiates glucose intolerance and systemic inflammation.

Sczelecki S, Besse-Patin A, Abboud A, Kleiner S, Laznik-Bogoslavski D, Wrann CD, Ruas JL, Haibe-Kains B, Estall JL.

Am J Physiol Endocrinol Metab. 2014 Jan 15;306(2):E157-67. doi: 10.1152/ajpendo.00578.2013. Epub 2013 Nov 26.

PMID:
24280126
[PubMed - indexed for MEDLINE]
15.

Novel effects of chromosome Y on cardiac regulation, chromatin remodeling, and neonatal programming in male mice.

Praktiknjo SD, Llamas B, Scott-Boyer MP, Picard S, Robert F, Langlais D, Haibe-Kains B, Faubert D, Silversides DW, Deschepper CF.

Endocrinology. 2013 Dec;154(12):4746-56. doi: 10.1210/en.2013-1699. Epub 2013 Oct 8.

PMID:
24105479
[PubMed - indexed for MEDLINE]
16.

Proliferation and estrogen signaling can distinguish patients at risk for early versus late relapse among estrogen receptor positive breast cancers.

Bianchini G, Pusztai L, Karn T, Iwamoto T, Rody A, Kelly C, Müller V, Schmidt S, Qi Y, Holtrich U, Becker S, Santarpia L, Fasolo A, Del Conte G, Zambetti M, Sotiriou C, Haibe-Kains B, Symmans WF, Gianni L.

Breast Cancer Res. 2013;15(5):R86.

PMID:
24060333
[PubMed - in process]
Free PMC Article
17.

Estrogen receptor negative/progesterone receptor positive breast cancer is not a reproducible subtype.

Hefti MM, Hu R, Knoblauch NW, Collins LC, Haibe-Kains B, Tamimi RM, Beck AH.

Breast Cancer Res. 2013;15(4):R68.

PMID:
23971947
[PubMed - in process]
Free PMC Article
18.

mRMRe: an R package for parallelized mRMR ensemble feature selection.

De Jay N, Papillon-Cavanagh S, Olsen C, El-Hachem N, Bontempi G, Haibe-Kains B.

Bioinformatics. 2013 Sep 15;29(18):2365-8. doi: 10.1093/bioinformatics/btt383. Epub 2013 Jul 3.

PMID:
23825369
[PubMed - indexed for MEDLINE]
19.

CD4⁺ follicular helper T cell infiltration predicts breast cancer survival.

Gu-Trantien C, Loi S, Garaud S, Equeter C, Libin M, de Wind A, Ravoet M, Le Buanec H, Sibille C, Manfouo-Foutsop G, Veys I, Haibe-Kains B, Singhal SK, Michiels S, Rothé F, Salgado R, Duvillier H, Ignatiadis M, Desmedt C, Bron D, Larsimont D, Piccart M, Sotiriou C, Willard-Gallo K.

J Clin Invest. 2013 Jul 1;123(7):2873-92. doi: 10.1172/JCI67428. Epub 2013 Jun 17.

PMID:
23778140
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

CD73 promotes anthracycline resistance and poor prognosis in triple negative breast cancer.

Loi S, Pommey S, Haibe-Kains B, Beavis PA, Darcy PK, Smyth MJ, Stagg J.

Proc Natl Acad Sci U S A. 2013 Jul 2;110(27):11091-6. doi: 10.1073/pnas.1222251110. Epub 2013 Jun 17.

PMID:
23776241
[PubMed - indexed for MEDLINE]
Free PMC Article

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