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Results: 13

1.

Phylogenetic analysis of Maverick/Polinton giant transposons across organisms.

Haapa-Paananen S, Wahlberg N, Savilahti H.

Mol Phylogenet Evol. 2014 Jun 2;78C:271-274. doi: 10.1016/j.ympev.2014.05.024. [Epub ahead of print]

PMID:
24882428
[PubMed - as supplied by publisher]
2.

Inhibition of the mitochondrial pyrimidine biosynthesis enzyme dihydroorotate dehydrogenase by doxorubicin and brequinar sensitizes cancer cells to TRAIL-induced apoptosis.

He T, Haapa-Paananen S, Kaminskyy VO, Kohonen P, Fey V, Zhivotovsky B, Kallioniemi O, Perälä M.

Oncogene. 2014 Jul 3;33(27):3538-49. doi: 10.1038/onc.2013.313. Epub 2013 Sep 9.

PMID:
24013224
[PubMed - in process]
3.

Functional profiling of precursor MicroRNAs identifies MicroRNAs essential for glioma proliferation.

Haapa-Paananen S, Chen P, Hellström K, Kohonen P, Hautaniemi S, Kallioniemi O, Perälä M.

PLoS One. 2013;8(4):e60930. doi: 10.1371/journal.pone.0060930. Epub 2013 Apr 5.

PMID:
23577178
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Flexibility in MuA transposase family protein structures: functional mapping with scanning mutagenesis and sequence alignment of protein homologues.

Rasila TS, Vihinen M, Paulin L, Haapa-Paananen S, Savilahti H.

PLoS One. 2012;7(5):e37922. doi: 10.1371/journal.pone.0037922. Epub 2012 May 29.

PMID:
22666413
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

HES6 gene is selectively overexpressed in glioma and represents an important transcriptional regulator of glioma proliferation.

Haapa-Paananen S, Kiviluoto S, Waltari M, Puputti M, Mpindi JP, Kohonen P, Tynninen O, Haapasalo H, Joensuu H, Perälä M, Kallioniemi O.

Oncogene. 2012 Mar 8;31(10):1299-310. doi: 10.1038/onc.2011.316. Epub 2011 Jul 25.

PMID:
21785461
[PubMed - indexed for MEDLINE]
6.

GTI: a novel algorithm for identifying outlier gene expression profiles from integrated microarray datasets.

Mpindi JP, Sara H, Haapa-Paananen S, Kilpinen S, Pisto T, Bucher E, Ojala K, Iljin K, Vainio P, Björkman M, Gupta S, Kohonen P, Nees M, Kallioniemi O.

PLoS One. 2011 Feb 18;6(2):e17259. doi: 10.1371/journal.pone.0017259. Erratum in: PLoS One. 2011;6(4). doi:10.1371/annotation/7d571883-faf0-4f66-86a2-806c36c4741c.

PMID:
21365010
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Universal platform for quantitative analysis of DNA transposition.

Pajunen MI, Rasila TS, Happonen LJ, Lamberg A, Haapa-Paananen S, Kiljunen S, Savilahti H.

Mob DNA. 2010 Nov 26;1(1):24. doi: 10.1186/1759-8753-1-24.

PMID:
21110848
[PubMed]
Free PMC Article
8.

Large-scale data integration framework provides a comprehensive view on glioblastoma multiforme.

Ovaska K, Laakso M, Haapa-Paananen S, Louhimo R, Chen P, Aittomäki V, Valo E, Núñez-Fontarnau J, Rantanen V, Karinen S, Nousiainen K, Lahesmaa-Korpinen AM, Miettinen M, Saarinen L, Kohonen P, Wu J, Westermarck J, Hautaniemi S.

Genome Med. 2010 Sep 7;2(9):65. doi: 10.1186/gm186.

PMID:
20822536
[PubMed]
Free PMC Article
9.

Interactions between Notch- and hypoxia-induced transcriptomes in embryonic stem cells.

Main H, Lee KL, Yang H, Haapa-Paananen S, Edgren H, Jin S, Sahlgren C, Kallioniemi O, Poellinger L, Lim B, Lendahl U.

Exp Cell Res. 2010 May 15;316(9):1610-24. doi: 10.1016/j.yexcr.2009.12.012. Epub 2009 Dec 23.

PMID:
20034489
[PubMed - indexed for MEDLINE]
10.

Protein lysate microarray analysis to identify microRNAs regulating estrogen receptor signaling in breast cancer cell lines.

Leivonen SK, Mäkelä R, Ostling P, Kohonen P, Haapa-Paananen S, Kleivi K, Enerly E, Aakula A, Hellström K, Sahlberg N, Kristensen VN, Børresen-Dale AL, Saviranta P, Perälä M, Kallioniemi O.

Oncogene. 2009 Nov 5;28(44):3926-36. doi: 10.1038/onc.2009.241. Epub 2009 Aug 17.

PMID:
19684618
[PubMed - indexed for MEDLINE]
11.

Systematic bioinformatic analysis of expression levels of 17,330 human genes across 9,783 samples from 175 types of healthy and pathological tissues.

Kilpinen S, Autio R, Ojala K, Iljin K, Bucher E, Sara H, Pisto T, Saarela M, Skotheim RI, Björkman M, Mpindi JP, Haapa-Paananen S, Vainio P, Edgren H, Wolf M, Astola J, Nees M, Hautaniemi S, Kallioniemi O.

Genome Biol. 2008;9(9):R139. doi: 10.1186/gb-2008-9-9-r139. Epub 2008 Sep 19.

PMID:
18803840
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Identification of target genes in laryngeal squamous cell carcinoma by high-resolution copy number and gene expression microarray analyses.

Järvinen AK, Autio R, Haapa-Paananen S, Wolf M, Saarela M, Grénman R, Leivo I, Kallioniemi O, Mäkitie AA, Monni O.

Oncogene. 2006 Nov 2;25(52):6997-7008. Epub 2006 May 22.

PMID:
16715129
[PubMed - indexed for MEDLINE]
13.

DNA transposition of bacteriophage Mu. A quantitative analysis of target site selection in vitro.

Haapa-Paananen S, Rita H, Savilahti H.

J Biol Chem. 2002 Jan 25;277(4):2843-51. Epub 2001 Nov 7.

PMID:
11700310
[PubMed - indexed for MEDLINE]
Free Article

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