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Results: 12

1.

Gene expression prediction by soft integration and the elastic net-best performance of the DREAM3 gene expression challenge.

Gustafsson M, Hörnquist M.

PLoS One. 2010 Feb 16;5(2):e9134. doi: 10.1371/journal.pone.0009134.

2.

Genome-wide system analysis reveals stable yet flexible network dynamics in yeast.

Gustafsson M, Hörnquist M, Björkegren J, Tegnér J.

IET Syst Biol. 2009 Jul;3(4):219-28. doi: 10.1049/iet-syb.2008.0112.

PMID:
19640161
3.

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.

FANTOM Consortium, Suzuki H, Forrest AR, van Nimwegen E, Daub CO, Balwierz PJ, Irvine KM, Lassmann T, Ravasi T, Hasegawa Y, de Hoon MJ, Katayama S, Schroder K, Carninci P, Tomaru Y, Kanamori-Katayama M, Kubosaki A, Akalin A, Ando Y, Arner E, Asada M, Asahara H, Bailey T, Bajic VB, Bauer D, Beckhouse AG, Bertin N, Björkegren J, Brombacher F, Bulger E, Chalk AM, Chiba J, Cloonan N, Dawe A, Dostie J, Engström PG, Essack M, Faulkner GJ, Fink JL, Fredman D, Fujimori K, Furuno M, Gojobori T, Gough J, Grimmond SM, Gustafsson M, Hashimoto M, Hashimoto T, Hatakeyama M, Heinzel S, Hide W, Hofmann O, Hörnquist M, Huminiecki L, Ikeo K, Imamoto N, Inoue S, Inoue Y, Ishihara R, Iwayanagi T, Jacobsen A, Kaur M, Kawaji H, Kerr MC, Kimura R, Kimura S, Kimura Y, Kitano H, Koga H, Kojima T, Kondo S, Konno T, Krogh A, Kruger A, Kumar A, Lenhard B, Lennartsson A, Lindow M, Lizio M, Macpherson C, Maeda N, Maher CA, Maqungo M, Mar J, Matigian NA, Matsuda H, Mattick JS, Meier S, Miyamoto S, Miyamoto-Sato E, Nakabayashi K, Nakachi Y, Nakano M, Nygaard S, Okayama T, Okazaki Y, Okuda-Yabukami H, Orlando V, Otomo J, Pachkov M, Petrovsky N, Plessy C, Quackenbush J, Radovanovic A, Rehli M, Saito R, Sandelin A, Schmeier S, Schönbach C, Schwartz AS, Semple CA, Sera M, Severin J, Shirahige K, Simons C, St Laurent G, Suzuki M, Suzuki T, Sweet MJ, Taft RJ, Takeda S, Takenaka Y, Tan K, Taylor MS, Teasdale RD, Tegnér J, Teichmann S, Valen E, Wahlestedt C, Waki K, Waterhouse A, Wells CA, Winther O, Wu L, Yamaguchi K, Yanagawa H, Yasuda J, Zavolan M, Hume DA; Riken Omics Science Center, Arakawa T, Fukuda S, Imamura K, Kai C, Kaiho A, Kawashima T, Kawazu C, Kitazume Y, Kojima M, Miura H, Murakami K, Murata M, Ninomiya N, Nishiyori H, Noma S, Ogawa C, Sano T, Simon C, Tagami M, Takahashi Y, Kawai J, Hayashizaki Y.

Nat Genet. 2009 May;41(5):553-62. doi: 10.1038/ng.375. Epub 2009 Apr 19.

PMID:
19377474
4.

Reverse engineering of gene networks with LASSO and nonlinear basis functions.

Gustafsson M, Hörnquist M, Lundström J, Björkegren J, Tegnér J.

Ann N Y Acad Sci. 2009 Mar;1158:265-75. doi: 10.1111/j.1749-6632.2008.03764.x.

PMID:
19348648
5.

Controllability analysis of networks.

Lombardi A, Hörnquist M.

Phys Rev E Stat Nonlin Soft Matter Phys. 2007 May;75(5 Pt 2):056110. Epub 2007 May 15.

PMID:
17677136
6.

Constructing and analyzing a large-scale gene-to-gene regulatory network--lasso-constrained inference and biological validation.

Gustafsson M, Hörnquist M, Lombardi A.

IEEE/ACM Trans Comput Biol Bioinform. 2005 Jul-Sep;2(3):254-61.

PMID:
17044188
7.

Reverse engineering galactose regulation in yeast through model selection.

Thorsson V, Hörnquist M, Siegel AF, Hood L.

Stat Appl Genet Mol Biol. 2005;4:Article28. Epub 2005 Sep 27.

PMID:
16646846
8.

Visualization of large-scale correlations in gene expressions.

Eriksen KA, Hörnquist M, Sneppen K.

Funct Integr Genomics. 2004 Oct;4(4):241-5. Epub 2004 Aug 26.

PMID:
15338442
9.

Effective dimensionality for principal component analysis of time series expression data.

Hörnquist M, Hertz J, Wahde M.

Biosystems. 2003 Oct;71(3):311-7.

PMID:
14563571
10.

Effective dimensionality of large-scale expression data using principal component analysis.

Hörnquist M, Hertz J, Wahde M.

Biosystems. 2002 Mar-May;65(2-3):147-56.

PMID:
12069725
11.

Scale-free growing networks imply linear preferential attachment.

Eriksen KA, Hörnquist M.

Phys Rev E Stat Nonlin Soft Matter Phys. 2002 Jan;65(1 Pt 2):017102. Epub 2001 Dec 17.

PMID:
11800819
12.

Effects of nonlinearity on the time evolution of single-site localized states in periodic and aperiodic discrete systems.

Johansson M, Hörnquist M, Riklund R.

Phys Rev B Condens Matter. 1995 Jul 1;52(1):231-240. No abstract available.

PMID:
9979596
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