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Results: 1 to 20 of 42

1.

Label free cell-tracking and division detection based on 2D time-lapse images for lineage analysis of early embryo development.

Cicconet M, Gutwein M, Gunsalus KC, Geiger D.

Comput Biol Med. 2014 Aug;51:24-34. doi: 10.1016/j.compbiomed.2014.04.011. Epub 2014 May 9.

PMID:
24873887
[PubMed - in process]
2.

DevStaR: high-throughput quantification of C. elegans developmental stages.

White AG, Lees B, Kao HL, Cipriani PG, Munarriz E, Paaby AB, Erickson K, Guzman S, Rattanakorn K, Sontag E, Geiger D, Gunsalus KC, Piano F.

IEEE Trans Med Imaging. 2013 Oct;32(10):1791-803. doi: 10.1109/TMI.2013.2265092. Epub 2013 May 29.

PMID:
23722463
[PubMed - indexed for MEDLINE]
3.

Tertiary structure-based analysis of microRNA-target interactions.

Gan HH, Gunsalus KC.

RNA. 2013 Apr;19(4):539-51. doi: 10.1261/rna.035691.112. Epub 2013 Feb 15.

PMID:
23417009
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Electrical activity can impose time of day on the circadian transcriptome of pacemaker neurons.

Mizrak D, Ruben M, Myers GN, Rhrissorrakrai K, Gunsalus KC, Blau J.

Curr Biol. 2012 Oct 23;22(20):1871-80. doi: 10.1016/j.cub.2012.07.070. Epub 2012 Aug 30.

PMID:
22940468
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Networks in Caenorhabditis elegans.

Gunsalus KC, Rhrissorrakrai K.

Curr Opin Genet Dev. 2011 Dec;21(6):787-98. doi: 10.1016/j.gde.2011.10.003. Epub 2011 Nov 4. Review.

PMID:
22054717
[PubMed - indexed for MEDLINE]
6.

Rational design of temperature-sensitive alleles using computational structure prediction.

Poultney CS, Butterfoss GL, Gutwein MR, Drew K, Gresham D, Gunsalus KC, Shasha DE, Bonneau R.

PLoS One. 2011;6(9):e23947. doi: 10.1371/journal.pone.0023947. Epub 2011 Sep 2.

PMID:
21912654
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

MINE: Module Identification in Networks.

Rhrissorrakrai K, Gunsalus KC.

BMC Bioinformatics. 2011 May 23;12:192. doi: 10.1186/1471-2105-12-192.

PMID:
21605434
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

A high-resolution C. elegans essential gene network based on phenotypic profiling of a complex tissue.

Green RA, Kao HL, Audhya A, Arur S, Mayers JR, Fridolfsson HN, Schulman M, Schloissnig S, Niessen S, Laband K, Wang S, Starr DA, Hyman AA, Schedl T, Desai A, Piano F, Gunsalus KC, Oegema K.

Cell. 2011 Apr 29;145(3):470-82. doi: 10.1016/j.cell.2011.03.037.

PMID:
21529718
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.

Gerstein MB, Lu ZJ, Van Nostrand EL, Cheng C, Arshinoff BI, Liu T, Yip KY, Robilotto R, Rechtsteiner A, Ikegami K, Alves P, Chateigner A, Perry M, Morris M, Auerbach RK, Feng X, Leng J, Vielle A, Niu W, Rhrissorrakrai K, Agarwal A, Alexander RP, Barber G, Brdlik CM, Brennan J, Brouillet JJ, Carr A, Cheung MS, Clawson H, Contrino S, Dannenberg LO, Dernburg AF, Desai A, Dick L, Dosé AC, Du J, Egelhofer T, Ercan S, Euskirchen G, Ewing B, Feingold EA, Gassmann R, Good PJ, Green P, Gullier F, Gutwein M, Guyer MS, Habegger L, Han T, Henikoff JG, Henz SR, Hinrichs A, Holster H, Hyman T, Iniguez AL, Janette J, Jensen M, Kato M, Kent WJ, Kephart E, Khivansara V, Khurana E, Kim JK, Kolasinska-Zwierz P, Lai EC, Latorre I, Leahey A, Lewis S, Lloyd P, Lochovsky L, Lowdon RF, Lubling Y, Lyne R, MacCoss M, Mackowiak SD, Mangone M, McKay S, Mecenas D, Merrihew G, Miller DM 3rd, Muroyama A, Murray JI, Ooi SL, Pham H, Phippen T, Preston EA, Rajewsky N, Rätsch G, Rosenbaum H, Rozowsky J, Rutherford K, Ruzanov P, Sarov M, Sasidharan R, Sboner A, Scheid P, Segal E, Shin H, Shou C, Slack FJ, Slightam C, Smith R, Spencer WC, Stinson EO, Taing S, Takasaki T, Vafeados D, Voronina K, Wang G, Washington NL, Whittle CM, Wu B, Yan KK, Zeller G, Zha Z, Zhong M, Zhou X; modENCODE Consortium, Ahringer J, Strome S, Gunsalus KC, Micklem G, Liu XS, Reinke V, Kim SK, Hillier LW, Henikoff S, Piano F, Snyder M, Stein L, Lieb JD, Waterston RH.

Science. 2010 Dec 24;330(6012):1775-87. doi: 10.1126/science.1196914. Epub 2010 Dec 22. Erratum in: Science. 2011 Jan 7;331(6013):30.

PMID:
21177976
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Rapid and accurate developmental stage recognition of C. elegans from high-throughput image data.

White AG, Cipriani PG, Kao HL, Lees B, Geiger D, Sontag E, Gunsalus KC, Piano F.

Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit. 2010 Aug 5;2010(13-18 June 2010):3089-3096.

PMID:
22053146
[PubMed]
Free PMC Article
11.

The landscape of C. elegans 3'UTRs.

Mangone M, Manoharan AP, Thierry-Mieg D, Thierry-Mieg J, Han T, Mackowiak SD, Mis E, Zegar C, Gutwein MR, Khivansara V, Attie O, Chen K, Salehi-Ashtiani K, Vidal M, Harkins TT, Bouffard P, Suzuki Y, Sugano S, Kohara Y, Rajewsky N, Piano F, Gunsalus KC, Kim JK.

Science. 2010 Jul 23;329(5990):432-5. doi: 10.1126/science.1191244. Epub 2010 Jun 3.

PMID:
20522740
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Benzo[a]pyrene diol epoxide stimulates an inflammatory response in normal human lung fibroblasts through a p53 and JNK mediated pathway.

Dreij K, Rhrissorrakrai K, Gunsalus KC, Geacintov NE, Scicchitano DA.

Carcinogenesis. 2010 Jun;31(6):1149-57. doi: 10.1093/carcin/bgq073. Epub 2010 Apr 9.

PMID:
20382639
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Unlocking the secrets of the genome.

Celniker SE, Dillon LA, Gerstein MB, Gunsalus KC, Henikoff S, Karpen GH, Kellis M, Lai EC, Lieb JD, MacAlpine DM, Micklem G, Piano F, Snyder M, Stein L, White KP, Waterston RH; modENCODE Consortium.

Nature. 2009 Jun 18;459(7249):927-30. doi: 10.1038/459927a. No abstract available.

PMID:
19536255
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network.

Simonis N, Rual JF, Carvunis AR, Tasan M, Lemmens I, Hirozane-Kishikawa T, Hao T, Sahalie JM, Venkatesan K, Gebreab F, Cevik S, Klitgord N, Fan C, Braun P, Li N, Ayivi-Guedehoussou N, Dann E, Bertin N, Szeto D, Dricot A, Yildirim MA, Lin C, de Smet AS, Kao HL, Simon C, Smolyar A, Ahn JS, Tewari M, Boxem M, Milstein S, Yu H, Dreze M, Vandenhaute J, Gunsalus KC, Cusick ME, Hill DE, Tavernier J, Roth FP, Vidal M.

Nat Methods. 2009 Jan;6(1):47-54.

PMID:
19123269
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Browsing multidimensional molecular networks with the generic network browser (N-Browse).

Kao HL, Gunsalus KC.

Curr Protoc Bioinformatics. 2008 Sep;Chapter 9:Unit 9.11. doi: 10.1002/0471250953.bi0911s23.

PMID:
18819079
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Mating induces an immune response and developmental switch in the Drosophila oviduct.

Kapelnikov A, Zelinger E, Gottlieb Y, Rhrissorrakrai K, Gunsalus KC, Heifetz Y.

Proc Natl Acad Sci U S A. 2008 Sep 16;105(37):13912-7. doi: 10.1073/pnas.0710997105. Epub 2008 Aug 25.

PMID:
18725632
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

A protein domain-based interactome network for C. elegans early embryogenesis.

Boxem M, Maliga Z, Klitgord N, Li N, Lemmens I, Mana M, de Lichtervelde L, Mul JD, van de Peut D, Devos M, Simonis N, Yildirim MA, Cokol M, Kao HL, de Smet AS, Wang H, Schlaitz AL, Hao T, Milstein S, Fan C, Tipsword M, Drew K, Galli M, Rhrissorrakrai K, Drechsel D, Koller D, Roth FP, Iakoucheva LM, Dunker AK, Bonneau R, Gunsalus KC, Hill DE, Piano F, Tavernier J, van den Heuvel S, Hyman AA, Vidal M.

Cell. 2008 Aug 8;134(3):534-45. doi: 10.1016/j.cell.2008.07.009. Erratum in: Cell. 2012 Dec 21;151(7):1633.

PMID:
18692475
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

A Caenorhabditis elegans genetic-interaction map wiggles into view.

Gunsalus KC.

J Biol. 2008;7(3):8. doi: 10.1186/jbiol70. Epub 2008 Mar 7. Review.

PMID:
18341704
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Protein production and purification.

Structural Genomics Consortium; China Structural Genomics Consortium; Northeast Structural Genomics Consortium, Gräslund S, Nordlund P, Weigelt J, Hallberg BM, Bray J, Gileadi O, Knapp S, Oppermann U, Arrowsmith C, Hui R, Ming J, dhe-Paganon S, Park HW, Savchenko A, Yee A, Edwards A, Vincentelli R, Cambillau C, Kim R, Kim SH, Rao Z, Shi Y, Terwilliger TC, Kim CY, Hung LW, Waldo GS, Peleg Y, Albeck S, Unger T, Dym O, Prilusky J, Sussman JL, Stevens RC, Lesley SA, Wilson IA, Joachimiak A, Collart F, Dementieva I, Donnelly MI, Eschenfeldt WH, Kim Y, Stols L, Wu R, Zhou M, Burley SK, Emtage JS, Sauder JM, Thompson D, Bain K, Luz J, Gheyi T, Zhang F, Atwell S, Almo SC, Bonanno JB, Fiser A, Swaminathan S, Studier FW, Chance MR, Sali A, Acton TB, Xiao R, Zhao L, Ma LC, Hunt JF, Tong L, Cunningham K, Inouye M, Anderson S, Janjua H, Shastry R, Ho CK, Wang D, Wang H, Jiang M, Montelione GT, Stuart DI, Owens RJ, Daenke S, Schütz A, Heinemann U, Yokoyama S, Büssow K, Gunsalus KC.

Nat Methods. 2008 Feb;5(2):135-46. doi: 10.1038/nmeth.f.202. Review. Erratum in: Nat Methods. 2008 Apr;5(4):369. Hallberg, B Martin [added].

PMID:
18235434
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Diverse roles of actin in C. elegans early embryogenesis.

Velarde N, Gunsalus KC, Piano F.

BMC Dev Biol. 2007 Dec 24;7:142.

PMID:
18157918
[PubMed - indexed for MEDLINE]
Free PMC Article

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