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Solanum venturii, a suitable model system for virus-induced gene silencing studies in potato reveals StMKK6 as an important player in plant immunity.

Dobnik D, Lazar A, Stare T, Gruden K, Vleeshouwers VG, Žel J.

Plant Methods. 2016 May 20;12:29. doi: 10.1186/s13007-016-0129-3. eCollection 2016.


System level analysis of cacao seed ripening reveals a sequential interplay of primary and secondary metabolism leading to polyphenol accumulation and preparation of stress resistance.

Wang L, Nägele T, Doerfler H, Fragner L, Chaturvedi P, Nukarinen E, Bellaire A, Huber W, Weiszmann J, Engelmeier D, Ramsak Z, Gruden K, Weckwerth W.

Plant J. 2016 May 2. doi: 10.1111/tpj.13201. [Epub ahead of print]


RNA-dependent RNA polymerase 1 in potato (Solanum tuberosum) and its relationship to other plant RNA-dependent RNA polymerases.

Hunter LJ, Brockington SF, Murphy AM, Pate AE, Gruden K, MacFarlane SA, Palukaitis P, Carr JP.

Sci Rep. 2016 Mar 16;6:23082. doi: 10.1038/srep23082.


Primary Metabolism, Phenylpropanoids and Antioxidant Pathways Are Regulated in Potato as a Response to Potato virus Y Infection.

Kogovšek P, Pompe-Novak M, Petek M, Fragner L, Weckwerth W, Gruden K.

PLoS One. 2016 Jan 4;11(1):e0146135. doi: 10.1371/journal.pone.0146135. eCollection 2016.


Heterogeneous glioblastoma cell cross-talk promotes phenotype alterations and enhanced drug resistance.

Motaln H, Koren A, Gruden K, Ramšak Ž, Schichor C, Lah TT.

Oncotarget. 2015 Dec 1;6(38):40998-1017. doi: 10.18632/oncotarget.5701.


Correction: Expression Analysis of All Protease Genes Reveals Cathepsin K to Be Overexpressed in Glioblastoma.

Verbovšek U, Motaln H, Rotter A, Atai NA, Gruden K, Van Noorden CJ, Lah TT.

PLoS One. 2015 Oct 29;10(10):e0142116. doi: 10.1371/journal.pone.0142116. eCollection 2015. No abstract available.


Transcriptome study and identification of potential marker genes related to the stable expression of recombinant proteins in CHO clones.

Jamnikar U, Nikolic P, Belic A, Blas M, Gaser D, Francky A, Laux H, Blejec A, Baebler S, Gruden K.

BMC Biotechnol. 2015 Oct 23;15:98. doi: 10.1186/s12896-015-0218-9.


Roles of the crotonyl-CoA carboxylase/reductase homologues in acetate assimilation and biosynthesis of immunosuppressant FK506 in Streptomyces tsukubaensis.

Blažič M, Kosec G, Baebler Š, Gruden K, Petković H.

Microb Cell Fact. 2015 Oct 14;14(1):164. doi: 10.1186/s12934-015-0352-z.


Bimodal dynamics of primary metabolism-related responses in tolerant potato-Potato virus Y interaction.

Stare T, Ramšak Ž, Blejec A, Stare K, Turnšek N, Weckwerth W, Wienkoop S, Vodnik D, Gruden K.

BMC Genomics. 2015 Sep 19;16:716. doi: 10.1186/s12864-015-1925-2.


Correction: Rule-Based Design of Plant Expression Vectors Using GenoCAD.

Coll A, Wilson ML, Gruden K, Peccoud J.

PLoS One. 2015 Aug 13;10(8):e0136004. doi: 10.1371/journal.pone.0136004. eCollection 2015. No abstract available.


Rule-Based Design of Plant Expression Vectors Using GenoCAD.

Coll A, Wilson ML, Gruden K, Peccoud J.

PLoS One. 2015 Jul 6;10(7):e0132502. doi: 10.1371/journal.pone.0132502. eCollection 2015. Erratum in: PLoS One. 2015;10(8):e0136004.


Clitocypin, a fungal cysteine protease inhibitor, exerts its insecticidal effect on Colorado potato beetle larvae by inhibiting their digestive cysteine proteases.

Šmid I, Rotter A, Gruden K, Brzin J, Buh Gašparič M, Kos J, Žel J, Sabotič J.

Pestic Biochem Physiol. 2015 Jul;122:59-66. doi: 10.1016/j.pestbp.2014.12.022. Epub 2014 Dec 23.


BioMiner: Paving the Way for Personalized Medicine.

Bauer C, Stec K, Glintschert A, Gruden K, Schichor C, Or-Guil M, Selbig J, Schuchhardt J.

Cancer Inform. 2015 Apr 20;14:55-63. doi: 10.4137/CIN.S20910. eCollection 2015.


Transcriptomic variation between different Chinese hamster ovary cell lines.

Blas M, Francky A, Jamnikar U, Gaser D, Baebler Š, Blejec A, Gruden K.

Biotechnol Lett. 2015 Sep;37(9):1737-45. doi: 10.1007/s10529-015-1850-0. Epub 2015 May 13.


Analysis of Glioblastoma Patients' Plasma Revealed the Presence of MicroRNAs with a Prognostic Impact on Survival and Those of Viral Origin.

Herman A, Gruden K, Blejec A, Podpečan V, Motaln H, Rožman P, Hren M, Zupančič K, Veber M, Verbovšek U, Lah Turnšek T, Porčnik A, Koršič M, Knežević M, Jeras M.

PLoS One. 2015 May 7;10(5):e0125791. doi: 10.1371/journal.pone.0125791. eCollection 2015.


Expression analysis of all protease genes reveals cathepsin K to be overexpressed in glioblastoma.

Verbovšek U, Motaln H, Rotter A, Atai NA, Gruden K, Van Noorden CJ, Lah TT.

PLoS One. 2014 Oct 30;9(10):e111819. doi: 10.1371/journal.pone.0111819. eCollection 2014. Erratum in: PLoS One. 2015;10(10):e0142116.


Potato virus Y infection hinders potato defence response and renders plants more vulnerable to Colorado potato beetle attack.

Petek M, Rotter A, Kogovšek P, Baebler S, Mithöfer A, Gruden K.

Mol Ecol. 2014 Nov;23(21):5378-91. doi: 10.1111/mec.12932. Epub 2014 Oct 9.


GMO quantification: valuable experience and insights for the future.

Milavec M, Dobnik D, Yang L, Zhang D, Gruden K, Zel J.

Anal Bioanal Chem. 2014 Oct;406(26):6485-97. doi: 10.1007/s00216-014-8077-0. Epub 2014 Aug 16. Review.


Identification of plasma biomarker candidates in glioblastoma using an antibody-array-based proteomic approach.

Zupancic K, Blejec A, Herman A, Veber M, Verbovsek U, Korsic M, Knezevic M, Rozman P, Turnsek TL, Gruden K, Motaln H.

Radiol Oncol. 2014 Jul 10;48(3):257-66. doi: 10.2478/raon-2014-0014. eCollection 2014 Sep.


Optimising droplet digital PCR analysis approaches for detection and quantification of bacteria: a case study of fire blight and potato brown rot.

Dreo T, Pirc M, Ramšak Ž, Pavšič J, Milavec M, Zel J, Gruden K.

Anal Bioanal Chem. 2014 Oct;406(26):6513-28. doi: 10.1007/s00216-014-8084-1. Epub 2014 Aug 31.

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