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Results: 20

1.

RNA Polymerase III promoter screen uncovers a novel noncoding RNA family conserved in Caenorhabditis and other clade V nematodes.

Gruber AR.

Gene. 2014 Jul 10;544(2):236-40. doi: 10.1016/j.gene.2014.04.068. Epub 2014 Apr 30.

PMID:
24792899
[PubMed - indexed for MEDLINE]
2.

Means to an end: mechanisms of alternative polyadenylation of messenger RNA precursors.

Gruber AR, Martin G, Keller W, Zavolan M.

Wiley Interdiscip Rev RNA. 2014 Mar-Apr;5(2):183-96. doi: 10.1002/wrna.1206. Epub 2013 Nov 14.

PMID:
24243805
[PubMed - in process]
3.

Translation-dependent displacement of UPF1 from coding sequences causes its enrichment in 3' UTRs.

Zünd D, Gruber AR, Zavolan M, Mühlemann O.

Nat Struct Mol Biol. 2013 Aug;20(8):936-43. doi: 10.1038/nsmb.2635. Epub 2013 Jul 7.

PMID:
23832275
[PubMed - indexed for MEDLINE]
4.

Insights into snoRNA biogenesis and processing from PAR-CLIP of snoRNA core proteins and small RNA sequencing.

Kishore S, Gruber AR, Jedlinski DJ, Syed AP, Jorjani H, Zavolan M.

Genome Biol. 2013 Sep 9;14(5):R45. [Epub ahead of print]

PMID:
23706177
[PubMed - as supplied by publisher]
Free PMC Article
5.

Cleavage factor Im is a key regulator of 3' UTR length.

Gruber AR, Martin G, Keller W, Zavolan M.

RNA Biol. 2012 Dec 1;9(12):1405-12. doi: 10.4161/rna.22570. Epub 2012 Nov 27.

PMID:
23187700
[PubMed - indexed for MEDLINE]
6.

Genome-wide analysis of pre-mRNA 3' end processing reveals a decisive role of human cleavage factor I in the regulation of 3' UTR length.

Martin G, Gruber AR, Keller W, Zavolan M.

Cell Rep. 2012 Jun 28;1(6):753-63. doi: 10.1016/j.celrep.2012.05.003. Epub 2012 Jun 7.

PMID:
22813749
[PubMed - indexed for MEDLINE]
Free Article
7.

Tristetraprolin-driven regulatory circuit controls quality and timing of mRNA decay in inflammation.

Kratochvill F, Machacek C, Vogl C, Ebner F, Sedlyarov V, Gruber AR, Hartweger H, Vielnascher R, Karaghiosoff M, Rülicke T, Müller M, Hofacker I, Lang R, Kovarik P.

Mol Syst Biol. 2011 Dec 20;7:560. doi: 10.1038/msb.2011.93.

PMID:
22186734
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Animal snoRNAs and scaRNAs with exceptional structures.

Marz M, Gruber AR, Höner Zu Siederdissen C, Amman F, Badelt S, Bartschat S, Bernhart SH, Beyer W, Kehr S, Lorenz R, Tanzer A, Yusuf D, Tafer H, Hofacker IL, Stadler PF.

RNA Biol. 2011 Nov-Dec;8(6):938-46. doi: 10.4161/rna.8.6.16603. Epub 2011 Nov 1.

PMID:
21955586
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

AREsite: a database for the comprehensive investigation of AU-rich elements.

Gruber AR, Fallmann J, Kratochvill F, Kovarik P, Hofacker IL.

Nucleic Acids Res. 2011 Jan;39(Database issue):D66-9. doi: 10.1093/nar/gkq990. Epub 2010 Nov 11.

PMID:
21071424
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Nematode sbRNAs: homologs of vertebrate Y RNAs.

Boria I, Gruber AR, Tanzer A, Bernhart SH, Lorenz R, Mueller MM, Hofacker IL, Stadler PF.

J Mol Evol. 2010 Apr;70(4):346-58. doi: 10.1007/s00239-010-9332-4. Epub 2010 Mar 27.

PMID:
20349053
[PubMed - indexed for MEDLINE]
11.

RNAz 2.0: improved noncoding RNA detection.

Gruber AR, Findeiß S, Washietl S, Hofacker IL, Stadler PF.

Pac Symp Biocomput. 2010:69-79.

PMID:
19908359
[PubMed - indexed for MEDLINE]
Free Article
12.

RNAalifold: improved consensus structure prediction for RNA alignments.

Bernhart SH, Hofacker IL, Will S, Gruber AR, Stadler PF.

BMC Bioinformatics. 2008 Nov 11;9:474. doi: 10.1186/1471-2105-9-474.

PMID:
19014431
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Arthropod 7SK RNA.

Gruber AR, Kilgus C, Mosig A, Hofacker IL, Hennig W, Stadler PF.

Mol Biol Evol. 2008 Sep;25(9):1923-30. doi: 10.1093/molbev/msn140. Epub 2008 Jun 19.

PMID:
18566019
[PubMed - indexed for MEDLINE]
Free Article
14.

The Vienna RNA websuite.

Gruber AR, Lorenz R, Bernhart SH, Neuböck R, Hofacker IL.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W70-4. doi: 10.1093/nar/gkn188. Epub 2008 Apr 19.

PMID:
18424795
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Strategies for measuring evolutionary conservation of RNA secondary structures.

Gruber AR, Bernhart SH, Hofacker IL, Washietl S.

BMC Bioinformatics. 2008 Feb 26;9:122. doi: 10.1186/1471-2105-9-122.

PMID:
18302738
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Invertebrate 7SK snRNAs.

Gruber AR, Koper-Emde D, Marz M, Tafer H, Bernhart S, Obernosterer G, Mosig A, Hofacker IL, Stadler PF, Benecke BJ.

J Mol Evol. 2008 Feb;66(2):107-15. doi: 10.1007/s00239-007-9052-6. Epub 2008 Jan 12.

PMID:
18193315
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Structured RNAs in the ENCODE selected regions of the human genome.

Washietl S, Pedersen JS, Korbel JO, Stocsits C, Gruber AR, Hackermüller J, Hertel J, Lindemeyer M, Reiche K, Tanzer A, Ucla C, Wyss C, Antonarakis SE, Denoeud F, Lagarde J, Drenkow J, Kapranov P, Gingeras TR, Guigó R, Snyder M, Gerstein MB, Reymond A, Hofacker IL, Stadler PF.

Genome Res. 2007 Jun;17(6):852-64.

PMID:
17568003
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

The RNAz web server: prediction of thermodynamically stable and evolutionarily conserved RNA structures.

Gruber AR, Neuböck R, Hofacker IL, Washietl S.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W335-8. Epub 2007 Apr 22.

PMID:
17452347
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Capture, care, and captive breeding of 13-lined ground squirrels, Spermophilus tridecemlineatus.

Vaughan DK, Gruber AR, Michalski ML, Seidling J, Schlink S.

Lab Anim (NY). 2006 Apr;35(4):33-40.

PMID:
16582898
[PubMed - indexed for MEDLINE]
20.

Children who set fires: some background and behavioral characteristics.

Gruber AR, Heck ET, Mintzer E.

Am J Orthopsychiatry. 1981 Jul;51(3):484-8.

PMID:
7258313
[PubMed - indexed for MEDLINE]

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