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Results: 1 to 20 of 200

1.

Functional redundancy in the nuclear compartmentalization of the late-replicating genome.

Ragoczy T, Telling A, Scalzo D, Kooperberg C, Groudine M.

Nucleus. 2014 Dec 10:0. [Epub ahead of print]

PMID:
25493640
[PubMed - as supplied by publisher]
2.

Nucleolar tethering mediates pairing between the IgH and Myc loci.

Strongin DE, Groudine M, Politz JC.

Nucleus. 2014 Sep-Oct;5(5):474-81. doi: 10.4161/nucl.36233.

PMID:
25482199
[PubMed - in process]
3.

Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution.

Vierstra J, Rynes E, Sandstrom R, Zhang M, Canfield T, Hansen RS, Stehling-Sun S, Sabo PJ, Byron R, Humbert R, Thurman RE, Johnson AK, Vong S, Lee K, Bates D, Neri F, Diegel M, Giste E, Haugen E, Dunn D, Wilken MS, Josefowicz S, Samstein R, Chang KH, Eichler EE, De Bruijn M, Reh TA, Skoultchi A, Rudensky A, Orkin SH, Papayannopoulou T, Treuting PM, Selleri L, Kaul R, Groudine M, Bender MA, Stamatoyannopoulos JA.

Science. 2014 Nov 21;346(6212):1007-12. doi: 10.1126/science.1246426.

PMID:
25411453
[PubMed - in process]
4.

Conservation of trans-acting circuitry during mammalian regulatory evolution.

Stergachis AB, Neph S, Sandstrom R, Haugen E, Reynolds AP, Zhang M, Byron R, Canfield T, Stelhing-Sun S, Lee K, Thurman RE, Vong S, Bates D, Neri F, Diegel M, Giste E, Dunn D, Vierstra J, Hansen RS, Johnson AK, Sabo PJ, Wilken MS, Reh TA, Treuting PM, Kaul R, Groudine M, Bender MA, Borenstein E, Stamatoyannopoulos JA.

Nature. 2014 Nov 20;515(7527):365-70. doi: 10.1038/nature13972.

PMID:
25409825
[PubMed - in process]
5.

A comparative encyclopedia of DNA elements in the mouse genome.

Yue F, Cheng Y, Breschi A, Vierstra J, Wu W, Ryba T, Sandstrom R, Ma Z, Davis C, Pope BD, Shen Y, Pervouchine DD, Djebali S, Thurman RE, Kaul R, Rynes E, Kirilusha A, Marinov GK, Williams BA, Trout D, Amrhein H, Fisher-Aylor K, Antoshechkin I, DeSalvo G, See LH, Fastuca M, Drenkow J, Zaleski C, Dobin A, Prieto P, Lagarde J, Bussotti G, Tanzer A, Denas O, Li K, Bender MA, Zhang M, Byron R, Groudine MT, McCleary D, Pham L, Ye Z, Kuan S, Edsall L, Wu YC, Rasmussen MD, Bansal MS, Kellis M, Keller CA, Morrissey CS, Mishra T, Jain D, Dogan N, Harris RS, Cayting P, Kawli T, Boyle AP, Euskirchen G, Kundaje A, Lin S, Lin Y, Jansen C, Malladi VS, Cline MS, Erickson DT, Kirkup VM, Learned K, Sloan CA, Rosenbloom KR, Lacerda de Sousa B, Beal K, Pignatelli M, Flicek P, Lian J, Kahveci T, Lee D, Kent WJ, Ramalho Santos M, Herrero J, Notredame C, Johnson A, Vong S, Lee K, Bates D, Neri F, Diegel M, Canfield T, Sabo PJ, Wilken MS, Reh TA, Giste E, Shafer A, Kutyavin T, Haugen E, Dunn D, Reynolds AP, Neph S, Humbert R, Hansen RS, De Bruijn M, Selleri L, Rudensky A, Josefowicz S, Samstein R, Eichler EE, Orkin SH, Levasseur D, Papayannopoulou T, Chang KH, Skoultchi A, Gosh S, Disteche C, Treuting P, Wang Y, Weiss MJ, Blobel GA, Cao X, Zhong S, Wang T, Good PJ, Lowdon RF, Adams LB, Zhou XQ, Pazin MJ, Feingold EA, Wold B, Taylor J, Mortazavi A, Weissman SM, Stamatoyannopoulos JA, Snyder MP, Guigo R, Gingeras TR, Gilbert DM, Hardison RC, Beer MA, Ren B; Mouse ENCODE Consortium.

Nature. 2014 Nov 20;515(7527):355-64. doi: 10.1038/nature13992.

PMID:
25409824
[PubMed - in process]
6.

Nucleolar tethering mediates pairing between the IgH and Myc loci.

Strongin DE, Groudine M, Politz JC.

Nucleus. 2014 Aug 26;5(5). [Epub ahead of print]

PMID:
25157533
[PubMed - as supplied by publisher]
Free Article
7.

The nucleosomal barrier to promoter escape by RNA polymerase II is overcome by the chromatin remodeler Chd1.

Skene PJ, Hernandez AE, Groudine M, Henikoff S.

Elife. 2014 Apr 15;3:e02042. doi: 10.7554/eLife.02042.

PMID:
24737864
[PubMed - in process]
Free PMC Article
8.

The histone-H3K4-specific demethylase KDM5B binds to its substrate and product through distinct PHD fingers.

Klein BJ, Piao L, Xi Y, Rincon-Arano H, Rothbart SB, Peng D, Wen H, Larson C, Zhang X, Zheng X, Cortazar MA, Peña PV, Mangan A, Bentley DL, Strahl BD, Groudine M, Li W, Shi X, Kutateladze TG.

Cell Rep. 2014 Jan 30;6(2):325-35. doi: 10.1016/j.celrep.2013.12.021. Epub 2014 Jan 9.

PMID:
24412361
[PubMed - indexed for MEDLINE]
Free Article
9.

Something silent this way forms: the functional organization of the repressive nuclear compartment.

Politz JC, Scalzo D, Groudine M.

Annu Rev Cell Dev Biol. 2013;29:241-70. doi: 10.1146/annurev-cellbio-101512-122317. Epub 2013 Jul 5. Review.

PMID:
23834025
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Dido3 PHD modulates cell differentiation and division.

Gatchalian J, Fütterer A, Rothbart SB, Tong Q, Rincon-Arano H, Sánchez de Diego A, Groudine M, Strahl BD, Martínez-A C, van Wely KH, Kutateladze TG.

Cell Rep. 2013 Jul 11;4(1):148-58. doi: 10.1016/j.celrep.2013.06.014. Epub 2013 Jul 3.

PMID:
23831028
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Molecular basis for chromatin binding and regulation of MLL5.

Ali M, Rincón-Arano H, Zhao W, Rothbart SB, Tong Q, Parkhurst SM, Strahl BD, Deng LW, Groudine M, Kutateladze TG.

Proc Natl Acad Sci U S A. 2013 Jul 9;110(28):11296-301. doi: 10.1073/pnas.1310156110. Epub 2013 Jun 24.

PMID:
23798402
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

When untethered, something silent inside comes.

Politz JC, Ragoczy T, Groudine M.

Nucleus. 2013 May-Jun;4(3):153-5. doi: 10.4161/nucl.24999. Epub 2013 May 15.

PMID:
23714733
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

UpSET-ting the balance: modulating open chromatin features in metazoan genomes.

Rincon-Arano H, Parkhurst SM, Groudine M.

Fly (Austin). 2013 Jul-Sep;7(3):153-60. doi: 10.4161/fly.24732. Epub 2013 May 6.

PMID:
23649046
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

UpSET recruits HDAC complexes and restricts chromatin accessibility and acetylation at promoter regions.

Rincon-Arano H, Halow J, Delrow JJ, Parkhurst SM, Groudine M.

Cell. 2012 Dec 7;151(6):1214-28. doi: 10.1016/j.cell.2012.11.009. Epub 2012 Nov 21.

PMID:
23177352
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

An expansive human regulatory lexicon encoded in transcription factor footprints.

Neph S, Vierstra J, Stergachis AB, Reynolds AP, Haugen E, Vernot B, Thurman RE, John S, Sandstrom R, Johnson AK, Maurano MT, Humbert R, Rynes E, Wang H, Vong S, Lee K, Bates D, Diegel M, Roach V, Dunn D, Neri J, Schafer A, Hansen RS, Kutyavin T, Giste E, Weaver M, Canfield T, Sabo P, Zhang M, Balasundaram G, Byron R, MacCoss MJ, Akey JM, Bender MA, Groudine M, Kaul R, Stamatoyannopoulos JA.

Nature. 2012 Sep 6;489(7414):83-90. doi: 10.1038/nature11212.

PMID:
22955618
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

An encyclopedia of mouse DNA elements (Mouse ENCODE).

Mouse ENCODE Consortium, Stamatoyannopoulos JA, Snyder M, Hardison R, Ren B, Gingeras T, Gilbert DM, Groudine M, Bender M, Kaul R, Canfield T, Giste E, Johnson A, Zhang M, Balasundaram G, Byron R, Roach V, Sabo PJ, Sandstrom R, Stehling AS, Thurman RE, Weissman SM, Cayting P, Hariharan M, Lian J, Cheng Y, Landt SG, Ma Z, Wold BJ, Dekker J, Crawford GE, Keller CA, Wu W, Morrissey C, Kumar SA, Mishra T, Jain D, Byrska-Bishop M, Blankenberg D, Lajoie BR, Jain G, Sanyal A, Chen KB, Denas O, Taylor J, Blobel GA, Weiss MJ, Pimkin M, Deng W, Marinov GK, Williams BA, Fisher-Aylor KI, Desalvo G, Kiralusha A, Trout D, Amrhein H, Mortazavi A, Edsall L, McCleary D, Kuan S, Shen Y, Yue F, Ye Z, Davis CA, Zaleski C, Jha S, Xue C, Dobin A, Lin W, Fastuca M, Wang H, Guigo R, Djebali S, Lagarde J, Ryba T, Sasaki T, Malladi VS, Cline MS, Kirkup VM, Learned K, Rosenbloom KR, Kent WJ, Feingold EA, Good PJ, Pazin M, Lowdon RF, Adams LB.

Genome Biol. 2012 Aug 13;13(8):418. doi: 10.1186/gb-2012-13-8-418.

PMID:
22889292
[PubMed - in process]
Free PMC Article
17.

What can systems theory of networks offer to biology?

Rajapakse I, Groudine M, Mesbahi M.

PLoS Comput Biol. 2012;8(6):e1002543. doi: 10.1371/journal.pcbi.1002543. Epub 2012 Jun 28. No abstract available.

PMID:
22761554
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

The hypersensitive sites of the murine β-globin locus control region act independently to affect nuclear localization and transcriptional elongation.

Bender MA, Ragoczy T, Lee J, Byron R, Telling A, Dean A, Groudine M.

Blood. 2012 Apr 19;119(16):3820-7. doi: 10.1182/blood-2011-09-380485. Epub 2012 Feb 29.

PMID:
22378846
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Losing control: cancer's catastrophic transition.

Rajapakse I, Scalzo D, Groudine M.

Nucleus. 2011 Jul-Aug;2(4):249-52. doi: 10.4161/nucl.2.4.16506. Epub 2011 Jul 1.

PMID:
21941112
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Dynamics and control of state-dependent networks for probing genomic organization.

Rajapakse I, Groudine M, Mesbahi M.

Proc Natl Acad Sci U S A. 2011 Oct 18;108(42):17257-62. doi: 10.1073/pnas.1113249108. Epub 2011 Sep 12.

PMID:
21911407
[PubMed - indexed for MEDLINE]
Free PMC Article

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