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Results: 1 to 20 of 194

1.

The nucleosomal barrier to promoter escape by RNA polymerase II is overcome by the chromatin remodeler Chd1.

Skene PJ, Hernandez AE, Groudine M, Henikoff S.

Elife. 2014 Apr 15;3:e02042. doi: 10.7554/eLife.02042.

PMID:
24737864
[PubMed]
Free PMC Article
2.

The histone-H3K4-specific demethylase KDM5B binds to its substrate and product through distinct PHD fingers.

Klein BJ, Piao L, Xi Y, Rincon-Arano H, Rothbart SB, Peng D, Wen H, Larson C, Zhang X, Zheng X, Cortazar MA, Peña PV, Mangan A, Bentley DL, Strahl BD, Groudine M, Li W, Shi X, Kutateladze TG.

Cell Rep. 2014 Jan 30;6(2):325-35. doi: 10.1016/j.celrep.2013.12.021. Epub 2014 Jan 9.

PMID:
24412361
[PubMed - in process]
Free Article
3.

Something silent this way forms: the functional organization of the repressive nuclear compartment.

Politz JC, Scalzo D, Groudine M.

Annu Rev Cell Dev Biol. 2013;29:241-70. doi: 10.1146/annurev-cellbio-101512-122317. Epub 2013 Jul 5. Review.

PMID:
23834025
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Dido3 PHD modulates cell differentiation and division.

Gatchalian J, Fütterer A, Rothbart SB, Tong Q, Rincon-Arano H, Sánchez de Diego A, Groudine M, Strahl BD, Martínez-A C, van Wely KH, Kutateladze TG.

Cell Rep. 2013 Jul 11;4(1):148-58. doi: 10.1016/j.celrep.2013.06.014. Epub 2013 Jul 3.

PMID:
23831028
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Molecular basis for chromatin binding and regulation of MLL5.

Ali M, Rincón-Arano H, Zhao W, Rothbart SB, Tong Q, Parkhurst SM, Strahl BD, Deng LW, Groudine M, Kutateladze TG.

Proc Natl Acad Sci U S A. 2013 Jul 9;110(28):11296-301. doi: 10.1073/pnas.1310156110. Epub 2013 Jun 24.

PMID:
23798402
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

When untethered, something silent inside comes.

Politz JC, Ragoczy T, Groudine M.

Nucleus. 2013 May-Jun;4(3):153-5. doi: 10.4161/nucl.24999. Epub 2013 May 15.

PMID:
23714733
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

UpSET-ting the balance: modulating open chromatin features in metazoan genomes.

Rincon-Arano H, Parkhurst SM, Groudine M.

Fly (Austin). 2013 Jul-Sep;7(3):153-60. doi: 10.4161/fly.24732. Epub 2013 May 6.

PMID:
23649046
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

UpSET recruits HDAC complexes and restricts chromatin accessibility and acetylation at promoter regions.

Rincon-Arano H, Halow J, Delrow JJ, Parkhurst SM, Groudine M.

Cell. 2012 Dec 7;151(6):1214-28. doi: 10.1016/j.cell.2012.11.009. Epub 2012 Nov 21.

PMID:
23177352
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

An expansive human regulatory lexicon encoded in transcription factor footprints.

Neph S, Vierstra J, Stergachis AB, Reynolds AP, Haugen E, Vernot B, Thurman RE, John S, Sandstrom R, Johnson AK, Maurano MT, Humbert R, Rynes E, Wang H, Vong S, Lee K, Bates D, Diegel M, Roach V, Dunn D, Neri J, Schafer A, Hansen RS, Kutyavin T, Giste E, Weaver M, Canfield T, Sabo P, Zhang M, Balasundaram G, Byron R, MacCoss MJ, Akey JM, Bender MA, Groudine M, Kaul R, Stamatoyannopoulos JA.

Nature. 2012 Sep 6;489(7414):83-90. doi: 10.1038/nature11212.

PMID:
22955618
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

An encyclopedia of mouse DNA elements (Mouse ENCODE).

Mouse ENCODE Consortium, Stamatoyannopoulos JA, Snyder M, Hardison R, Ren B, Gingeras T, Gilbert DM, Groudine M, Bender M, Kaul R, Canfield T, Giste E, Johnson A, Zhang M, Balasundaram G, Byron R, Roach V, Sabo PJ, Sandstrom R, Stehling AS, Thurman RE, Weissman SM, Cayting P, Hariharan M, Lian J, Cheng Y, Landt SG, Ma Z, Wold BJ, Dekker J, Crawford GE, Keller CA, Wu W, Morrissey C, Kumar SA, Mishra T, Jain D, Byrska-Bishop M, Blankenberg D, Lajoie1 BR, Jain G, Sanyal A, Chen KB, Denas O, Taylor J, Blobel GA, Weiss MJ, Pimkin M, Deng W, Marinov GK, Williams BA, Fisher-Aylor KI, Desalvo G, Kiralusha A, Trout D, Amrhein H, Mortazavi A, Edsall L, McCleary D, Kuan S, Shen Y, Yue F, Ye Z, Davis CA, Zaleski C, Jha S, Xue C, Dobin A, Lin W, Fastuca M, Wang H, Guigo R, Djebali S, Lagarde J, Ryba T, Sasaki T, Malladi VS, Cline MS, Kirkup VM, Learned K, Rosenbloom KR, Kent WJ, Feingold EA, Good PJ, Pazin M, Lowdon RF, Adams LB.

Genome Biol. 2012 Aug 13;13(8):418. [Epub ahead of print]

PMID:
22889292
[PubMed - as supplied by publisher]
Free PMC Article
11.

What can systems theory of networks offer to biology?

Rajapakse I, Groudine M, Mesbahi M.

PLoS Comput Biol. 2012;8(6):e1002543. doi: 10.1371/journal.pcbi.1002543. Epub 2012 Jun 28. No abstract available.

PMID:
22761554
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The hypersensitive sites of the murine β-globin locus control region act independently to affect nuclear localization and transcriptional elongation.

Bender MA, Ragoczy T, Lee J, Byron R, Telling A, Dean A, Groudine M.

Blood. 2012 Apr 19;119(16):3820-7. doi: 10.1182/blood-2011-09-380485. Epub 2012 Feb 29.

PMID:
22378846
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Losing control: cancer's catastrophic transition.

Rajapakse I, Scalzo D, Groudine M.

Nucleus. 2011 Jul-Aug;2(4):249-52. doi: 10.4161/nucl.2.4.16506. Epub 2011 Jul 1.

PMID:
21941112
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Dynamics and control of state-dependent networks for probing genomic organization.

Rajapakse I, Groudine M, Mesbahi M.

Proc Natl Acad Sci U S A. 2011 Oct 18;108(42):17257-62. doi: 10.1073/pnas.1113249108. Epub 2011 Sep 12.

PMID:
21911407
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

A functional element necessary for fetal hemoglobin silencing.

Sankaran VG, Xu J, Byron R, Greisman HA, Fisher C, Weatherall DJ, Sabath DE, Groudine M, Orkin SH, Premawardhena A, Bender MA.

N Engl J Med. 2011 Sep 1;365(9):807-14. doi: 10.1056/NEJMoa1103070.

PMID:
21879898
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Cohesin mediates chromatin interactions that regulate mammalian β-globin expression.

Chien R, Zeng W, Kawauchi S, Bender MA, Santos R, Gregson HC, Schmiesing JA, Newkirk DA, Kong X, Ball AR Jr, Calof AL, Lander AD, Groudine MT, Yokomori K.

J Biol Chem. 2011 May 20;286(20):17870-8. doi: 10.1074/jbc.M110.207365. Epub 2011 Mar 29.

PMID:
21454523
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

On emerging nuclear order.

Rajapakse I, Groudine M.

J Cell Biol. 2011 Mar 7;192(5):711-21. doi: 10.1083/jcb.201010129. Review.

PMID:
21383074
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Functional and mechanistic diversity of distal transcription enhancers.

Bulger M, Groudine M.

Cell. 2011 Feb 4;144(3):327-39. doi: 10.1016/j.cell.2011.01.024. Review. Erratum in: Cell. 2011 Mar 4;144(5):825.

PMID:
21295696
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Networking the nucleus.

Rajapakse I, Scalzo D, Tapscott SJ, Kosak ST, Groudine M.

Mol Syst Biol. 2010 Jul;6:395. doi: 10.1038/msb.2010.48. Review.

PMID:
20664641
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Multiple functions of Ldb1 required for beta-globin activation during erythroid differentiation.

Song SH, Kim A, Ragoczy T, Bender MA, Groudine M, Dean A.

Blood. 2010 Sep 30;116(13):2356-64. doi: 10.1182/blood-2010-03-272252. Epub 2010 Jun 22.

PMID:
20570862
[PubMed - indexed for MEDLINE]
Free PMC Article

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