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Results: 1 to 20 of 27

1.

De-novo learning of genome-scale regulatory networks in S. cerevisiae.

Ma S, Kemmeren P, Gresham D, Statnikov A.

PLoS One. 2014 Sep 12;9(9):e106479. doi: 10.1371/journal.pone.0106479. eCollection 2014.

2.

Determination of in vivo RNA kinetics using RATE-seq.

Neymotin B, Athanasiadou R, Gresham D.

RNA. 2014 Oct;20(10):1645-52. doi: 10.1261/rna.045104.114. Epub 2014 Aug 26.

3.

Molecular specificity, convergence and constraint shape adaptive evolution in nutrient-poor environments.

Hong J, Gresham D.

PLoS Genet. 2014 Jan;10(1):e1004041. doi: 10.1371/journal.pgen.1004041. Epub 2014 Jan 9.

4.

Design and analysis of Bar-seq experiments.

Robinson DG, Chen W, Storey JD, Gresham D.

G3 (Bethesda). 2014 Jan 10;4(1):11-8. doi: 10.1534/g3.113.008565.

5.

Genetic and nongenetic determinants of cell growth variation assessed by high-throughput microscopy.

Ziv N, Siegal ML, Gresham D.

Mol Biol Evol. 2013 Dec;30(12):2568-78. doi: 10.1093/molbev/mst138. Epub 2013 Aug 11.

6.

A sticky solution.

Gresham D.

Elife. 2013 Apr 2;2:e00655. doi: 10.7554/eLife.00655.

7.

The details in the distributions: why and how to study phenotypic variability.

Geiler-Samerotte KA, Bauer CR, Li S, Ziv N, Gresham D, Siegal ML.

Curr Opin Biotechnol. 2013 Aug;24(4):752-9. doi: 10.1016/j.copbio.2013.03.010. Epub 2013 Apr 6.

8.

Amino acid transporter genes are essential for FLO11-dependent and FLO11-independent biofilm formation and invasive growth in Saccharomyces cerevisiae.

Torbensen R, Møller HD, Gresham D, Alizadeh S, Ochmann D, Boles E, Regenberg B.

PLoS One. 2012;7(7):e41272. doi: 10.1371/journal.pone.0041272. Epub 2012 Jul 26.

9.

High-Resolution SNP/CGH Microarrays Reveal the Accumulation of Loss of Heterozygosity in Commonly Used Candida albicans Strains.

Abbey D, Hickman M, Gresham D, Berman J.

G3 (Bethesda). 2011 Dec;1(7):523-30. doi: 10.1534/g3.111.000885. Epub 2011 Dec 1. Erratum in: G3 (Bethesda). 2012 Nov;2(11):1473.

10.

Rational design of temperature-sensitive alleles using computational structure prediction.

Poultney CS, Butterfoss GL, Gutwein MR, Drew K, Gresham D, Gunsalus KC, Shasha DE, Bonneau R.

PLoS One. 2011;6(9):e23947. doi: 10.1371/journal.pone.0023947. Epub 2011 Sep 2.

11.

System-level analysis of genes and functions affecting survival during nutrient starvation in Saccharomyces cerevisiae.

Gresham D, Boer VM, Caudy A, Ziv N, Brandt NJ, Storey JD, Botstein D.

Genetics. 2011 Jan;187(1):299-317. doi: 10.1534/genetics.110.120766. Epub 2010 Oct 13.

12.

Adaptation to diverse nitrogen-limited environments by deletion or extrachromosomal element formation of the GAP1 locus.

Gresham D, Usaite R, Germann SM, Lisby M, Botstein D, Regenberg B.

Proc Natl Acad Sci U S A. 2010 Oct 26;107(43):18551-6. doi: 10.1073/pnas.1014023107. Epub 2010 Oct 11.

13.

Dissection of genetically complex traits with extremely large pools of yeast segregants.

Ehrenreich IM, Torabi N, Jia Y, Kent J, Martis S, Shapiro JA, Gresham D, Caudy AA, Kruglyak L.

Nature. 2010 Apr 15;464(7291):1039-42. doi: 10.1038/nature08923.

14.

Optimized detection of sequence variation in heterozygous genomes using DNA microarrays with isothermal-melting probes.

Gresham D, Curry B, Ward A, Gordon DB, Brizuela L, Kruglyak L, Botstein D.

Proc Natl Acad Sci U S A. 2010 Jan 26;107(4):1482-7. doi: 10.1073/pnas.0913883107. Epub 2010 Jan 8.

15.

A molecular barcoded yeast ORF library enables mode-of-action analysis of bioactive compounds.

Ho CH, Magtanong L, Barker SL, Gresham D, Nishimura S, Natarajan P, Koh JL, Porter J, Gray CA, Andersen RJ, Giaever G, Nislow C, Andrews B, Botstein D, Graham TR, Yoshida M, Boone C.

Nat Biotechnol. 2009 Apr;27(4):369-77. doi: 10.1038/nbt.1534. Epub 2009 Apr 6.

16.

Predicting cellular growth from gene expression signatures.

Airoldi EM, Huttenhower C, Gresham D, Lu C, Caudy AA, Dunham MJ, Broach JR, Botstein D, Troyanskaya OG.

PLoS Comput Biol. 2009 Jan;5(1):e1000257. doi: 10.1371/journal.pcbi.1000257. Epub 2009 Jan 2.

17.

The repertoire and dynamics of evolutionary adaptations to controlled nutrient-limited environments in yeast.

Gresham D, Desai MM, Tucker CM, Jenq HT, Pai DA, Ward A, DeSevo CG, Botstein D, Dunham MJ.

PLoS Genet. 2008 Dec;4(12):e1000303. doi: 10.1371/journal.pgen.1000303. Epub 2008 Dec 12.

18.

Rise of the machines.

Gresham D, Kruglyak L.

PLoS Genet. 2008 Aug 1;4(8):e1000134. doi: 10.1371/journal.pgen.1000134. No abstract available.

19.

Coordination of growth rate, cell cycle, stress response, and metabolic activity in yeast.

Brauer MJ, Huttenhower C, Airoldi EM, Rosenstein R, Matese JC, Gresham D, Boer VM, Troyanskaya OG, Botstein D.

Mol Biol Cell. 2008 Jan;19(1):352-67. Epub 2007 Oct 24.

20.

Genome-wide analysis of nucleotide-level variation in commonly used Saccharomyces cerevisiae strains.

Schacherer J, Ruderfer DM, Gresham D, Dolinski K, Botstein D, Kruglyak L.

PLoS One. 2007 Mar 28;2(3):e322.

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