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Items: 1 to 20 of 45

1.

"Hit-and-Run" transcription: de novo transcription initiated by a transient bZIP1 "hit" persists after the "run".

Doidy J, Li Y, Neymotin B, Edwards MB, Varala K, Gresham D, Coruzzi GM.

BMC Genomics. 2016 Feb 3;17(1):92. doi: 10.1186/s12864-016-2410-2.

PMID:
26843062
2.

Hst3p, a histone deacetylase, promotes maintenance of Saccharomyces cerevisiae chromosome III lacking efficient replication origins.

Irene C, Theis JF, Gresham D, Soteropoulos P, Newlon CS.

Mol Genet Genomics. 2016 Feb;291(1):271-83. doi: 10.1007/s00438-015-1105-8. Epub 2015 Aug 29.

PMID:
26319649
3.

Evolution: Fitness tracking for adapting populations.

Gresham D.

Nature. 2015 Mar 12;519(7542):164-5. doi: 10.1038/nature14207. Epub 2015 Feb 25. No abstract available.

PMID:
25731163
4.

The enduring utility of continuous culturing in experimental evolution.

Gresham D, Dunham MJ.

Genomics. 2014 Dec;104(6 Pt A):399-405. doi: 10.1016/j.ygeno.2014.09.015. Epub 2014 Oct 2. Review.

5.

De-novo learning of genome-scale regulatory networks in S. cerevisiae.

Ma S, Kemmeren P, Gresham D, Statnikov A.

PLoS One. 2014 Sep 12;9(9):e106479. doi: 10.1371/journal.pone.0106479. eCollection 2014.

6.

Determination of in vivo RNA kinetics using RATE-seq.

Neymotin B, Athanasiadou R, Gresham D.

RNA. 2014 Oct;20(10):1645-52. doi: 10.1261/rna.045104.114. Epub 2014 Aug 26.

7.

The functional basis of adaptive evolution in chemostats.

Gresham D, Hong J.

FEMS Microbiol Rev. 2015 Jan;39(1):2-16. doi: 10.1111/1574-6976.12082. Epub 2014 Dec 4. Review.

8.

Molecular specificity, convergence and constraint shape adaptive evolution in nutrient-poor environments.

Hong J, Gresham D.

PLoS Genet. 2014 Jan;10(1):e1004041. doi: 10.1371/journal.pgen.1004041. Epub 2014 Jan 9.

9.

Design and analysis of Bar-seq experiments.

Robinson DG, Chen W, Storey JD, Gresham D.

G3 (Bethesda). 2014 Jan 10;4(1):11-8. doi: 10.1534/g3.113.008565.

10.

The use of chemostats in microbial systems biology.

Ziv N, Brandt NJ, Gresham D.

J Vis Exp. 2013 Oct 14;(80). doi: 10.3791/50168.

11.

Genetic and nongenetic determinants of cell growth variation assessed by high-throughput microscopy.

Ziv N, Siegal ML, Gresham D.

Mol Biol Evol. 2013 Dec;30(12):2568-78. doi: 10.1093/molbev/mst138. Epub 2013 Aug 11.

12.

A sticky solution.

Gresham D.

Elife. 2013 Apr 2;2:e00655. doi: 10.7554/eLife.00655.

13.

The details in the distributions: why and how to study phenotypic variability.

Geiler-Samerotte KA, Bauer CR, Li S, Ziv N, Gresham D, Siegal ML.

Curr Opin Biotechnol. 2013 Aug;24(4):752-9. doi: 10.1016/j.copbio.2013.03.010. Epub 2013 Apr 6.

14.

Amino acid transporter genes are essential for FLO11-dependent and FLO11-independent biofilm formation and invasive growth in Saccharomyces cerevisiae.

Torbensen R, Møller HD, Gresham D, Alizadeh S, Ochmann D, Boles E, Regenberg B.

PLoS One. 2012;7(7):e41272. doi: 10.1371/journal.pone.0041272. Epub 2012 Jul 26.

15.

High-Resolution SNP/CGH Microarrays Reveal the Accumulation of Loss of Heterozygosity in Commonly Used Candida albicans Strains.

Abbey D, Hickman M, Gresham D, Berman J.

G3 (Bethesda). 2011 Dec;1(7):523-30. doi: 10.1534/g3.111.000885. Epub 2011 Dec 1. Erratum in: G3 (Bethesda). 2012 Nov;2(11):1473.

16.

DNA microarray-based mutation discovery and genotyping.

Gresham D.

Methods Mol Biol. 2011;772:179-91. doi: 10.1007/978-1-61779-228-1_10.

PMID:
22065438
17.

Rational design of temperature-sensitive alleles using computational structure prediction.

Poultney CS, Butterfoss GL, Gutwein MR, Drew K, Gresham D, Gunsalus KC, Shasha DE, Bonneau R.

PLoS One. 2011;6(9):e23947. doi: 10.1371/journal.pone.0023947. Epub 2011 Sep 2.

18.

System-level analysis of genes and functions affecting survival during nutrient starvation in Saccharomyces cerevisiae.

Gresham D, Boer VM, Caudy A, Ziv N, Brandt NJ, Storey JD, Botstein D.

Genetics. 2011 Jan;187(1):299-317. doi: 10.1534/genetics.110.120766. Epub 2010 Oct 13.

19.

Adaptation to diverse nitrogen-limited environments by deletion or extrachromosomal element formation of the GAP1 locus.

Gresham D, Usaite R, Germann SM, Lisby M, Botstein D, Regenberg B.

Proc Natl Acad Sci U S A. 2010 Oct 26;107(43):18551-6. doi: 10.1073/pnas.1014023107. Epub 2010 Oct 11.

20.

Dissection of genetically complex traits with extremely large pools of yeast segregants.

Ehrenreich IM, Torabi N, Jia Y, Kent J, Martis S, Shapiro JA, Gresham D, Caudy AA, Kruglyak L.

Nature. 2010 Apr 15;464(7291):1039-42. doi: 10.1038/nature08923.

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