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HCV kinetic and modeling analyses indicate similar time to cure among sofosbuvir combination regimens with daclatasvir, simeprevir or ledipasvir.

Dahari H, Canini L, Graw F, Uprichard SL, Araújo ES, Penaranda G, Coquet E, Chiche L, Riso A, Renou C, Bourliere M, Cotler SJ, Halfon P.

J Hepatol. 2016 Jun;64(6):1232-9. doi: 10.1016/j.jhep.2016.02.022. Epub 2016 Feb 22.


Multiscale modeling of virus replication and spread.

Kumberger P, Frey F, Schwarz US, Graw F.

FEBS Lett. 2016 Jul;590(13):1972-86. doi: 10.1002/1873-3468.12095. Epub 2016 Mar 6. Review.


Ebola virus dynamics in mice treated with favipiravir.

Madelain V, Oestereich L, Graw F, Nguyen TH, de Lamballerie X, Mentré F, Günther S, Guedj J.

Antiviral Res. 2015 Nov;123:70-7. doi: 10.1016/j.antiviral.2015.08.015. Epub 2015 Sep 2.


Estimating the In Vivo Killing Efficacy of Cytotoxic T Lymphocytes across Different Peptide-MHC Complex Densities.

Garcia V, Richter K, Graw F, Oxenius A, Regoes RR.

PLoS Comput Biol. 2015 May 1;11(5):e1004178. doi: 10.1371/journal.pcbi.1004178. eCollection 2015 May.


Quantification of Hepatitis C Virus Cell-to-Cell Spread Using a Stochastic Modeling Approach.

Graw F, Martin DN, Perelson AS, Uprichard SL, Dahari H.

J Virol. 2015 Jul;89(13):6551-61. doi: 10.1128/JVI.00016-15. Epub 2015 Apr 1.


Protective efficacy of individual CD8+ T cell specificities in chronic viral infection.

Johnson S, Bergthaler A, Graw F, Flatz L, Bonilla WV, Siegrist CA, Lambert PH, Regoes RR, Pinschewer DD.

J Immunol. 2015 Feb 15;194(4):1755-62. doi: 10.4049/jimmunol.1401771. Epub 2015 Jan 7.


Inferring viral dynamics in chronically HCV infected patients from the spatial distribution of infected hepatocytes.

Graw F, Balagopal A, Kandathil AJ, Ray SC, Thomas DL, Ribeiro RM, Perelson AS.

PLoS Comput Biol. 2014 Nov 13;10(11):e1003934. doi: 10.1371/journal.pcbi.1003934. eCollection 2014 Nov.


Predicting the impact of CD8+ T cell polyfunctionality on HIV disease progression.

Graw F, Regoes RR.

J Virol. 2014 Sep 1;88(17):10134-45. doi: 10.1128/JVI.00647-14. Epub 2014 Jun 25.


CD8+ T cells are activated in an antigen-independent manner in HIV-infected individuals.

Bastidas S, Graw F, Smith MZ, Kuster H, Günthard HF, Oxenius A.

J Immunol. 2014 Feb 15;192(4):1732-44. doi: 10.4049/jimmunol.1302027. Epub 2014 Jan 20.


Can non-lytic CD8+ T cells drive HIV-1 escape?

Seich Al Basatena NK, Chatzimichalis K, Graw F, Frost SD, Regoes RR, Asquith B.

PLoS Pathog. 2013;9(11):e1003656. doi: 10.1371/journal.ppat.1003656. Epub 2013 Nov 14.


Use of laser capture microdissection to map hepatitis C virus-positive hepatocytes in human liver.

Kandathil AJ, Graw F, Quinn J, Hwang HS, Torbenson M, Perelson AS, Ray SC, Thomas DL, Ribeiro RM, Balagopal A.

Gastroenterology. 2013 Dec;145(6):1404-13.e1-10. doi: 10.1053/j.gastro.2013.08.034. Epub 2013 Aug 22.


Dynamics of CD4(+) T cell responses against Listeria monocytogenes.

Graw F, Weber KS, Allen PM, Perelson AS.

J Immunol. 2012 Dec 1;189(11):5250-6. doi: 10.4049/jimmunol.1200666. Epub 2012 Oct 24.


Agent-based and phylogenetic analyses reveal how HIV-1 moves between risk groups: injecting drug users sustain the heterosexual epidemic in Latvia.

Graw F, Leitner T, Ribeiro RM.

Epidemics. 2012 Jun;4(2):104-16. doi: 10.1016/j.epidem.2012.04.002. Epub 2012 May 2.


Influence of the fibroblastic reticular network on cell-cell interactions in lymphoid organs.

Graw F, Regoes RR.

PLoS Comput Biol. 2012;8(3):e1002436. doi: 10.1371/journal.pcbi.1002436. Epub 2012 Mar 22.


Dynamic antibody specificities and virion concentrations in circulating immune complexes in acute to chronic HIV-1 infection.

Liu P, Overman RG, Yates NL, Alam SM, Vandergrift N, Chen Y, Graw F, Freel SA, Kappes JC, Ochsenbauer C, Montefiori DC, Gao F, Perelson AS, Cohen MS, Haynes BF, Tomaras GD.

J Virol. 2011 Nov;85(21):11196-207. doi: 10.1128/JVI.05601-11. Epub 2011 Aug 24.


Systemic antibody responses to gut commensal bacteria during chronic HIV-1 infection.

Haas A, Zimmermann K, Graw F, Slack E, Rusert P, Ledergerber B, Bossart W, Weber R, Thurnheer MC, Battegay M, Hirschel B, Vernazza P, Patuto N, Macpherson AJ, Günthard HF, Oxenius A; Swiss HIV Cohort Study.

Gut. 2011 Nov;60(11):1506-19. doi: 10.1136/gut.2010.224774. Epub 2011 Apr 21.


Comparison of cytotoxic T lymphocyte efficacy in acute and persistent lymphocytic choriomeningitis virus infection.

Graw F, Richter K, Oxenius A, Regoes RR.

Proc Biol Sci. 2011 Nov 22;278(1723):3395-402. doi: 10.1098/rspb.2011.0453. Epub 2011 Mar 30.


Theoretical analysis of the evolution of immune memory.

Graw F, Magnus C, Regoes RR.

BMC Evol Biol. 2010 Dec 8;10:380. doi: 10.1186/1471-2148-10-380. Erratum in: BMC Evol Biol. 2011;11:54.


HIV-1 replication activates CD4+ T cells with specificities for persistent herpes viruses.

Haas A, Rehr M, Graw F, Rusert P, Bossart W, Kuster H, Trkola A, Günthard HF, Oxenius A.

EMBO Mol Med. 2010 Jun;2(6):231-44. doi: 10.1002/emmm.201000075.


Investigating CTL mediated killing with a 3D cellular automaton.

Graw F, Regoes RR.

PLoS Comput Biol. 2009 Aug;5(8):e1000466. doi: 10.1371/journal.pcbi.1000466. Epub 2009 Aug 21.

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