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Items: 1 to 20 of 55

1.

Genome-wide discovery and validation of Eucalyptus small RNAs reveals variable patterns of conservation and diversity across species of Myrtaceae.

Pappas Mde C, Pappas GJ Jr, Grattapaglia D.

BMC Genomics. 2015 Dec 29;16(1):1113. doi: 10.1186/s12864-015-2322-6.

2.

Examining the cause of high inbreeding depression: analysis of whole-genome sequence data in 28 selfed progeny of Eucalyptus grandis.

Hedrick PW, Hellsten U, Grattapaglia D.

New Phytol. 2016 Jan;209(2):600-11. doi: 10.1111/nph.13639. Epub 2015 Sep 10.

PMID:
26356869
3.

Parentage Reconstruction in Eucalyptus nitens Using SNPs and Microsatellite Markers: A Comparative Analysis of Marker Data Power and Robustness.

Telfer EJ, Stovold GT, Li Y, Silva-Junior OB, Grattapaglia DG, Dungey HS.

PLoS One. 2015 Jul 9;10(7):e0130601. doi: 10.1371/journal.pone.0130601. eCollection 2015.

5.

A flexible multi-species genome-wide 60K SNP chip developed from pooled resequencing of 240 Eucalyptus tree genomes across 12 species.

Silva-Junior OB, Faria DA, Grattapaglia D.

New Phytol. 2015 Jun;206(4):1527-40. doi: 10.1111/nph.13322. Epub 2015 Feb 13.

PMID:
25684350
6.

A novel genome-wide microsatellite resource for species of Eucalyptus with linkage-to-physical correspondence on the reference genome sequence.

Grattapaglia D, Mamani EM, Silva-Junior OB, Faria DA.

Mol Ecol Resour. 2015 Mar;15(2):437-48. doi: 10.1111/1755-0998.12317. Epub 2014 Sep 6.

PMID:
25146326
7.

The genome of Eucalyptus grandis.

Myburg AA, Grattapaglia D, Tuskan GA, Hellsten U, Hayes RD, Grimwood J, Jenkins J, Lindquist E, Tice H, Bauer D, Goodstein DM, Dubchak I, Poliakov A, Mizrachi E, Kullan AR, Hussey SG, Pinard D, van der Merwe K, Singh P, van Jaarsveld I, Silva-Junior OB, Togawa RC, Pappas MR, Faria DA, Sansaloni CP, Petroli CD, Yang X, Ranjan P, Tschaplinski TJ, Ye CY, Li T, Sterck L, Vanneste K, Murat F, Soler M, Clemente HS, Saidi N, Cassan-Wang H, Dunand C, Hefer CA, Bornberg-Bauer E, Kersting AR, Vining K, Amarasinghe V, Ranik M, Naithani S, Elser J, Boyd AE, Liston A, Spatafora JW, Dharmwardhana P, Raja R, Sullivan C, Romanel E, Alves-Ferreira M, Külheim C, Foley W, Carocha V, Paiva J, Kudrna D, Brommonschenkel SH, Pasquali G, Byrne M, Rigault P, Tibbits J, Spokevicius A, Jones RC, Steane DA, Vaillancourt RE, Potts BM, Joubert F, Barry K, Pappas GJ, Strauss SH, Jaiswal P, Grima-Pettenati J, Salse J, Van de Peer Y, Rokhsar DS, Schmutz J.

Nature. 2014 Jun 19;510(7505):356-62. doi: 10.1038/nature13308. Epub 2014 Jun 11.

PMID:
24919147
8.

Impacts of population structure and analytical models in genome-wide association studies of complex traits in forest trees: a case study in Eucalyptus globulus.

Cappa EP, El-Kassaby YA, Garcia MN, Acuña C, Borralho NM, Grattapaglia D, Marcucci Poltri SN.

PLoS One. 2013 Nov 25;8(11):e81267. doi: 10.1371/journal.pone.0081267. eCollection 2013.

9.

Agriculture: Feeding the future.

McCouch S, Baute GJ, Bradeen J, Bramel P, Bretting PK, Buckler E, Burke JM, Charest D, Cloutier S, Cole G, Dempewolf H, Dingkuhn M, Feuillet C, Gepts P, Grattapaglia D, Guarino L, Jackson S, Knapp S, Langridge P, Lawton-Rauh A, Lijua Q, Lusty C, Michael T, Myles S, Naito K, Nelson RL, Pontarollo R, Richards CM, Rieseberg L, Ross-Ibarra J, Rounsley S, Hamilton RS, Schurr U, Stein N, Tomooka N, van der Knaap E, van Tassel D, Toll J, Valls J, Varshney RK, Ward J, Waugh R, Wenzl P, Zamir D.

Nature. 2013 Jul 4;499(7456):23-4. doi: 10.1038/499023a. No abstract available.

PMID:
23823779
10.

Genomic characterization of DArT markers based on high-density linkage analysis and physical mapping to the Eucalyptus genome.

Petroli CD, Sansaloni CP, Carling J, Steane DA, Vaillancourt RE, Myburg AA, da Silva OB Jr, Pappas GJ Jr, Kilian A, Grattapaglia D.

PLoS One. 2012;7(9):e44684. doi: 10.1371/journal.pone.0044684. Epub 2012 Sep 11.

11.

A reference linkage map for Eucalyptus.

Hudson CJ, Freeman JS, Kullan AR, Petroli CD, Sansaloni CP, Kilian A, Detering F, Grattapaglia D, Potts BM, Myburg AA, Vaillancourt RE.

BMC Genomics. 2012 Jun 15;13:240. doi: 10.1186/1471-2164-13-240.

12.

Genetic diversity and assessment of 23 microsatellite markers for parentage testing of Santa Inês hair sheep in Brazil.

Souza CA, Paiva SR, McManus CM, Azevedo HC, Mariante AS, Grattapaglia D.

Genet Mol Res. 2012 May 8;11(2):1217-29. doi: 10.4238/2012.May.8.4.

13.

Genomic selection for growth and wood quality in Eucalyptus: capturing the missing heritability and accelerating breeding for complex traits in forest trees.

Resende MD, Resende MF Jr, Sansaloni CP, Petroli CD, Missiaggia AA, Aguiar AM, Abad JM, Takahashi EK, Rosado AM, Faria DA, Pappas GJ Jr, Kilian A, Grattapaglia D.

New Phytol. 2012 Apr;194(1):116-28. doi: 10.1111/j.1469-8137.2011.04038.x. Epub 2012 Feb 6.

14.

Accelerating the domestication of trees using genomic selection: accuracy of prediction models across ages and environments.

Resende MF Jr, Muñoz P, Acosta JJ, Peter GF, Davis JM, Grattapaglia D, Resende MD, Kirst M.

New Phytol. 2012 Feb;193(3):617-24. doi: 10.1111/j.1469-8137.2011.03895.x. Epub 2011 Oct 5. Erratum in: New Phytol. 2012 Mar;193(4):1099.

15.

Population analysis of vitamin D receptor polymorphisms and the role of genetic ancestry in an admixed population.

Lins TC, Vieira RG, Grattapaglia D, Pereira RW.

Genet Mol Biol. 2011 Jul;34(3):377-85. doi: 10.1590/S1415-47572011000300003. Epub 2011 Jul 1.

16.

A high-density transcript linkage map with 1,845 expressed genes positioned by microarray-based Single Feature Polymorphisms (SFP) in Eucalyptus.

Neves LG, Mc Mamani E, Alfenas AC, Kirst M, Grattapaglia D.

BMC Genomics. 2011 Apr 14;12:189. doi: 10.1186/1471-2164-12-189.

17.

High-throughput SNP genotyping in the highly heterozygous genome of Eucalyptus: assay success, polymorphism and transferability across species.

Grattapaglia D, Silva-Junior OB, Kirst M, de Lima BM, Faria DA, Pappas GJ Jr.

BMC Plant Biol. 2011 Apr 14;11:65. doi: 10.1186/1471-2229-11-65.

18.

Advancing Eucalyptus genomics: identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries.

Paiva JA, Prat E, Vautrin S, Santos MD, San-Clemente H, Brommonschenkel S, Fonseca PG, Grattapaglia D, Song X, Ammiraju JS, Kudrna D, Wing RA, Freitas AT, Bergès H, Grima-Pettenati J.

BMC Genomics. 2011 Mar 4;12:137. doi: 10.1186/1471-2164-12-137.

19.

Population genetic analysis and phylogeny reconstruction in Eucalyptus (Myrtaceae) using high-throughput, genome-wide genotyping.

Steane DA, Nicolle D, Sansaloni CP, Petroli CD, Carling J, Kilian A, Myburg AA, Grattapaglia D, Vaillancourt RE.

Mol Phylogenet Evol. 2011 Apr;59(1):206-24. doi: 10.1016/j.ympev.2011.02.003. Epub 2011 Feb 16.

PMID:
21310251
20.

A high-density Diversity Arrays Technology (DArT) microarray for genome-wide genotyping in Eucalyptus.

Sansaloni CP, Petroli CD, Carling J, Hudson CJ, Steane DA, Myburg AA, Grattapaglia D, Vaillancourt RE, Kilian A.

Plant Methods. 2010 Jun 30;6:16. doi: 10.1186/1746-4811-6-16.

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