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Items: 1 to 20 of 59


Heatmapper: web-enabled heat mapping for all.

Babicki S, Arndt D, Marcu A, Liang Y, Grant JR, Maciejewski A, Wishart DS.

Nucleic Acids Res. 2016 May 17. pii: gkw419. [Epub ahead of print]


PHASTER: a better, faster version of the PHAST phage search tool.

Arndt D, Grant JR, Marcu A, Sajed T, Pon A, Liang Y, Wishart DS.

Nucleic Acids Res. 2016 May 3. pii: gkw387. [Epub ahead of print]


Assessing the effects of a sequestered germline on interdomain lateral gene transfer in Metazoa.

Jensen L, Grant JR, Laughinghouse HD 4th, Katz LA.

Evolution. 2016 Jun;70(6):1322-33. doi: 10.1111/evo.12935. Epub 2016 May 30.


Improved PCR-Based Detection of Soil Transmitted Helminth Infections Using a Next-Generation Sequencing Approach to Assay Design.

Pilotte N, Papaiakovou M, Grant JR, Bierwert LA, Llewellyn S, McCarthy JS, Williams SA.

PLoS Negl Trop Dis. 2016 Mar 30;10(3):e0004578. doi: 10.1371/journal.pntd.0004578. eCollection 2016 Mar.


ECMDB 2.0: A richer resource for understanding the biochemistry of E. coli.

Sajed T, Marcu A, Ramirez M, Pon A, Guo AC, Knox C, Wilson M, Grant JR, Djoumbou Y, Wishart DS.

Nucleic Acids Res. 2016 Jan 4;44(D1):D495-501. doi: 10.1093/nar/gkv1060. Epub 2015 Oct 19.


Transcriptomic analysis by RNA sequencing reveals that hepatic interferon-induced genes may be associated with feed efficiency in beef heifers.

Paradis F, Yue S, Grant JR, Stothard P, Basarab JA, Fitzsimmons C.

J Anim Sci. 2015 Jul;93(7):3331-41. doi: 10.2527/jas.2015-8975.


Correction: Accurate, Fully-Automated NMR Spectral Profiling for Metabolomics.

Ravanbakhsh S, Liu P, Bjorndahl TC, Mandal R, Grant JR, Wilson M, Eisner R, Sinelnikov I, Hu X, Luchinat C, Greiner R, Wishart DS.

PLoS One. 2015 Jul 29;10(7):e0132873. doi: 10.1371/journal.pone.0132873. eCollection 2015. No abstract available.


Accurate, fully-automated NMR spectral profiling for metabolomics.

Ravanbakhsh S, Liu P, Bjorndahl TC, Mandal R, Grant JR, Wilson M, Eisner R, Sinelnikov I, Hu X, Luchinat C, Greiner R, Wishart DS.

PLoS One. 2015 May 27;10(5):e0124219. doi: 10.1371/journal.pone.0124219. eCollection 2015. Erratum in: PLoS One. 2015;10(7):e0132873. Bjordahl, Trent C [corrected to Bjorndahl, Trent C].


Taxon-rich phylogenomic analyses resolve the eukaryotic tree of life and reveal the power of subsampling by sites.

Katz LA, Grant JR.

Syst Biol. 2015 May;64(3):406-15. doi: 10.1093/sysbio/syu126. Epub 2014 Dec 23.


An integrated platform for bovine DNA methylome analysis suitable for small samples.

Shojaei Saadi HA, O'Doherty AM, Gagné D, Fournier É, Grant JR, Sirard MA, Robert C.

BMC Genomics. 2014 Jun 9;15:451. doi: 10.1186/1471-2164-15-451.


Molecular phylogenetics supports widespread cryptic species in moonworts (Botrychium s.s., Ophioglossaceae).

Dauphin B, Vieu J, Grant JR.

Am J Bot. 2014 Jan;101(1):128-40. doi: 10.3732/ajb.1300154. Epub 2014 Jan 7.


A high-resolution radiation hybrid map of the river buffalo major histocompatibility complex and comparison with BoLA.

Stafuzza NB, Greco AJ, Grant JR, Abbey CA, Gill CA, Raudsepp T, Skow LC, Womack JE, Riggs PK, Amaral ME.

Anim Genet. 2013 Aug;44(4):369-76. doi: 10.1111/age.12015. Epub 2012 Dec 6.


Development of a porcine (Sus scofa) embryo-specific microarray: array annotation and validation.

Tsoi S, Zhou C, Grant JR, Pasternak JA, Dobrinsky J, Rigault P, Nieminen J, Sirard MA, Robert C, Foxcroft GR, Dyck MK.

BMC Genomics. 2012 Aug 3;13:370. doi: 10.1186/1471-2164-13-370.


Comparing thousands of circular genomes using the CGView Comparison Tool.

Grant JR, Arantes AS, Stothard P.

BMC Genomics. 2012 May 23;13:202. doi: 10.1186/1471-2164-13-202.


Turning the crown upside down: gene tree parsimony roots the eukaryotic tree of life.

Katz LA, Grant JR, Parfrey LW, Burleigh JG.

Syst Biol. 2012 Jul;61(4):653-60. doi: 10.1093/sysbio/sys026. Epub 2012 Feb 14.


Combining resources to obtain a comprehensive survey of the bovine embryo transcriptome through deep sequencing and microarrays.

Robert C, Nieminen J, Dufort I, Gagné D, Grant JR, Cagnone G, Plourde D, Nivet AL, Fournier É, Paquet É, Blazejczyk M, Rigault P, Juge N, Sirard MA.

Mol Reprod Dev. 2011 Sep;78(9):651-64. doi: 10.1002/mrd.21364. Epub 2011 Aug 2.


Identification of candidate markers on bovine chromosome 14 (BTA14) under milk production trait quantitative trait loci in Holstein.

Marques E, Grant JR, Wang Z, Kolbehdari D, Stothard P, Plastow G, Moore SS.

J Anim Breed Genet. 2011 Aug;128(4):305-13. doi: 10.1111/j.1439-0388.2010.00910.x. Epub 2011 Apr 13.

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