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RiboDB Database: A Comprehensive Resource for Prokaryotic Systematics.

Jauffrit F, Penel S, Delmotte S, Rey C, de Vienne DM, Gouy M, Charrier JP, Flandrois JP, Brochier-Armanet C.

Mol Biol Evol. 2016 Aug;33(8):2170-2. doi: 10.1093/molbev/msw088. Epub 2016 May 5.


Gene Acquisitions from Bacteria at the Origins of Major Archaeal Clades Are Vastly Overestimated.

Groussin M, Boussau B, Szöllõsi G, Eme L, Gouy M, Brochier-Armanet C, Daubin V.

Mol Biol Evol. 2016 Feb;33(2):305-10. doi: 10.1093/molbev/msv249. Epub 2015 Nov 4.


leBIBIQBPP: a set of databases and a webtool for automatic phylogenetic analysis of prokaryotic sequences.

Flandrois JP, Perrière G, Gouy M.

BMC Bioinformatics. 2015 Aug 12;16:251. doi: 10.1186/s12859-015-0692-z.


Toward more accurate ancestral protein genotype-phenotype reconstructions with the use of species tree-aware gene trees.

Groussin M, Hobbs JK, Szöllősi GJ, Gribaldo S, Arcus VL, Gouy M.

Mol Biol Evol. 2015 Jan;32(1):13-22. doi: 10.1093/molbev/msu305. Epub 2014 Nov 4.


Phylogenomic test of the hypotheses for the evolutionary origin of eukaryotes.

Rochette NC, Brochier-Armanet C, Gouy M.

Mol Biol Evol. 2014 Apr;31(4):832-45. doi: 10.1093/molbev/mst272. Epub 2014 Jan 7.


The molecular signal for the adaptation to cold temperature during early life on Earth.

Groussin M, Boussau B, Charles S, Blanquart S, Gouy M.

Biol Lett. 2013 Oct 23;9(5):20130608.


Experimental assessment of the accuracy of genomic selection in sugarcane.

Gouy M, Rousselle Y, Bastianelli D, Lecomte P, Bonnal L, Roques D, Efile JC, Rocher S, Daugrois J, Toubi L, Nabeneza S, Hervouet C, Telismart H, Denis M, Thong-Chane A, Glaszmann JC, Hoarau JY, Nibouche S, Costet L.

Theor Appl Genet. 2013 Oct;126(10):2575-86. doi: 10.1007/s00122-013-2156-z. Epub 2013 Aug 2.


Bio++: efficient extensible libraries and tools for computational molecular evolution.

Guéguen L, Gaillard S, Boussau B, Gouy M, Groussin M, Rochette NC, Bigot T, Fournier D, Pouyet F, Cahais V, Bernard A, Scornavacca C, Nabholz B, Haudry A, Dachary L, Galtier N, Belkhir K, Dutheil JY.

Mol Biol Evol. 2013 Aug;30(8):1745-50. doi: 10.1093/molbev/mst097. Epub 2013 May 21.


A branch-heterogeneous model of protein evolution for efficient inference of ancestral sequences.

Groussin M, Boussau B, Gouy M.

Syst Biol. 2013 Jul;62(4):523-38. doi: 10.1093/sysbio/syt016. Epub 2013 Mar 7.


Genome-scale coestimation of species and gene trees.

Boussau B, Szöllosi GJ, Duret L, Gouy M, Tannier E, Daubin V.

Genome Res. 2013 Feb;23(2):323-30. doi: 10.1101/gr.141978.112. Epub 2012 Nov 6.


Genetic mapping of a major dominant gene for resistance to Ralstonia solanacearum in eggplant.

Lebeau A, Gouy M, Daunay MC, Wicker E, Chiroleu F, Prior P, Frary A, Dintinger J.

Theor Appl Genet. 2013 Jan;126(1):143-58. doi: 10.1007/s00122-012-1969-5. Epub 2012 Aug 29.


Lateral gene transfer as a support for the tree of life.

Abby SS, Tannier E, Gouy M, Daubin V.

Proc Natl Acad Sci U S A. 2012 Mar 27;109(13):4962-7. doi: 10.1073/pnas.1116871109. Epub 2012 Mar 13.


Adaptation to environmental temperature is a major determinant of molecular evolutionary rates in archaea.

Groussin M, Gouy M.

Mol Biol Evol. 2011 Sep;28(9):2661-74. doi: 10.1093/molbev/msr098. Epub 2011 Apr 15.


Species identification of staphylococci by amplification and sequencing of the tuf gene compared to the gap gene and by matrix-assisted laser desorption ionization time-of-flight mass spectrometry.

Bergeron M, Dauwalder O, Gouy M, Freydiere AM, Bes M, Meugnier H, Benito Y, Etienne J, Lina G, Vandenesch F, Boisset S.

Eur J Clin Microbiol Infect Dis. 2011 Mar;30(3):343-54. doi: 10.1007/s10096-010-1091-z. Epub 2010 Oct 22.


Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests.

Abby SS, Tannier E, Gouy M, Daubin V.

BMC Bioinformatics. 2010 Jun 15;11:324. doi: 10.1186/1471-2105-11-324.


SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building.

Gouy M, Guindon S, Gascuel O.

Mol Biol Evol. 2010 Feb;27(2):221-4. doi: 10.1093/molbev/msp259. Epub 2009 Oct 23.


Special feature of mixed phosphotriester derivatives of cytarabine.

Gouy MH, Jordheim LP, Lefebvre I, Cros E, Dumontet C, Peyrottes S, Périgaud C.

Bioorg Med Chem. 2009 Sep 1;17(17):6340-7. doi: 10.1016/j.bmc.2009.07.038. Epub 2009 Jul 23.


Databases of homologous gene families for comparative genomics.

Penel S, Arigon AM, Dufayard JF, Sertier AS, Daubin V, Duret L, Gouy M, Perrière G.

BMC Bioinformatics. 2009 Jun 16;10 Suppl 6:S3. doi: 10.1186/1471-2105-10-S6-S3.


Parallel adaptations to high temperatures in the Archaean eon.

Boussau B, Blanquart S, Necsulea A, Lartillot N, Gouy M.

Nature. 2008 Dec 18;456(7224):942-5. doi: 10.1038/nature07393. Epub 2008 Nov 26.

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