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Results: 1 to 20 of 453

1.

Where next for microbiome research?

Waldor MK, Tyson G, Borenstein E, Ochman H, Moeller A, Finlay BB, Kong HH, Gordon JI, Nelson KE, Dabbagh K, Smith H.

PLoS Biol. 2015 Jan 20;13(1):e1002050. doi: 10.1371/journal.pbio.1002050. eCollection 2015 Jan.

PMID:
25602283
[PubMed - in process]
Free Article
2.

Identifying strains that contribute to complex diseases through the study of microbial inheritance.

Faith JJ, Colombel JF, Gordon JI.

Proc Natl Acad Sci U S A. 2015 Jan 20;112(3):633-40. doi: 10.1073/pnas.1418781112. Epub 2015 Jan 9.

PMID:
25576328
[PubMed - in process]
3.

Genome-wide association study of Arabidopsis thaliana leaf microbial community.

Horton MW, Bodenhausen N, Beilsmith K, Meng D, Muegge BD, Subramanian S, Vetter MM, Vilhjálmsson BJ, Nordborg M, Gordon JI, Bergelson J.

Nat Commun. 2014 Nov 10;5:5320. doi: 10.1038/ncomms6320.

PMID:
25382143
[PubMed - in process]
4.

Bacteria from diverse habitats colonize and compete in the mouse gut.

Seedorf H, Griffin NW, Ridaura VK, Reyes A, Cheng J, Rey FE, Smith MI, Simon GM, Scheffrahn RH, Woebken D, Spormann AM, Van Treuren W, Ursell LK, Pirrung M, Robbins-Pianka A, Cantarel BL, Lombard V, Henrissat B, Knight R, Gordon JI.

Cell. 2014 Oct 9;159(2):253-66. doi: 10.1016/j.cell.2014.09.008. Epub 2014 Oct 2.

PMID:
25284151
[PubMed - in process]
5.

Members of the human gut microbiota involved in recovery from Vibrio cholerae infection.

Hsiao A, Ahmed AM, Subramanian S, Griffin NW, Drewry LL, Petri WA Jr, Haque R, Ahmed T, Gordon JI.

Nature. 2014 Nov 20;515(7527):423-6. doi: 10.1038/nature13738. Epub 2014 Sep 17.

PMID:
25231861
[PubMed - indexed for MEDLINE]
6.

Distinct contributions of Aire and antigen-presenting-cell subsets to the generation of self-tolerance in the thymus.

Perry JS, Lio CW, Kau AL, Nutsch K, Yang Z, Gordon JI, Murphy KM, Hsieh CS.

Immunity. 2014 Sep 18;41(3):414-26. doi: 10.1016/j.immuni.2014.08.007. Epub 2014 Sep 11.

PMID:
25220213
[PubMed - indexed for MEDLINE]
7.

An evolving perspective about the origins of childhood undernutrition and nutritional interventions that includes the gut microbiome.

Ahmed T, Auble D, Berkley JA, Black R, Ahern PP, Hossain M, Hsieh A, Ireen S, Arabi M, Gordon JI.

Ann N Y Acad Sci. 2014 Dec;1332(1):22-38. doi: 10.1111/nyas.12487. Epub 2014 Aug 12.

PMID:
25118072
[PubMed - in process]
8.

Mining the human gut microbiota for effector strains that shape the immune system.

Ahern PP, Faith JJ, Gordon JI.

Immunity. 2014 Jun 19;40(6):815-23. doi: 10.1016/j.immuni.2014.05.012.

PMID:
24950201
[PubMed - indexed for MEDLINE]
9.

Persistent gut microbiota immaturity in malnourished Bangladeshi children.

Subramanian S, Huq S, Yatsunenko T, Haque R, Mahfuz M, Alam MA, Benezra A, DeStefano J, Meier MF, Muegge BD, Barratt MJ, VanArendonk LG, Zhang Q, Province MA, Petri WA Jr, Ahmed T, Gordon JI.

Nature. 2014 Jun 19;510(7505):417-21. doi: 10.1038/nature13421. Epub 2014 Jun 4.

PMID:
24896187
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Microbial community dynamics and stability during an ammonia-induced shift to syntrophic acetate oxidation.

Werner JJ, Garcia ML, Perkins SD, Yarasheski KE, Smith SR, Muegge BD, Stadermann FJ, DeRito CM, Floss C, Madsen EL, Gordon JI, Angenent LT.

Appl Environ Microbiol. 2014 Jun;80(11):3375-83. doi: 10.1128/AEM.00166-14. Epub 2014 Mar 21.

PMID:
24657858
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Identifying gut microbe-host phenotype relationships using combinatorial communities in gnotobiotic mice.

Faith JJ, Ahern PP, Ridaura VK, Cheng J, Gordon JI.

Sci Transl Med. 2014 Jan 22;6(220):220ra11. doi: 10.1126/scitranslmed.3008051.

PMID:
24452263
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Gnotobiotic mouse model of phage-bacterial host dynamics in the human gut.

Reyes A, Wu M, McNulty NP, Rohwer FL, Gordon JI.

Proc Natl Acad Sci U S A. 2013 Dec 10;110(50):20236-41. doi: 10.1073/pnas.1319470110. Epub 2013 Nov 20.

PMID:
24259713
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Genetically dictated change in host mucus carbohydrate landscape exerts a diet-dependent effect on the gut microbiota.

Kashyap PC, Marcobal A, Ursell LK, Smits SA, Sonnenburg ED, Costello EK, Higginbottom SK, Domino SE, Holmes SP, Relman DA, Knight R, Gordon JI, Sonnenburg JL.

Proc Natl Acad Sci U S A. 2013 Oct 15;110(42):17059-64. doi: 10.1073/pnas.1306070110. Epub 2013 Sep 23.

PMID:
24062455
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Gut microbiota from twins discordant for obesity modulate metabolism in mice.

Ridaura VK, Faith JJ, Rey FE, Cheng J, Duncan AE, Kau AL, Griffin NW, Lombard V, Henrissat B, Bain JR, Muehlbauer MJ, Ilkayeva O, Semenkovich CF, Funai K, Hayashi DK, Lyle BJ, Martini MC, Ursell LK, Clemente JC, Van Treuren W, Walters WA, Knight R, Newgard CB, Heath AC, Gordon JI.

Science. 2013 Sep 6;341(6150):1241214. doi: 10.1126/science.1241214.

PMID:
24009397
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Regulated expression of polysaccharide utilization and capsular biosynthesis loci in biofilm and planktonic Bacteroides thetaiotaomicron during growth in chemostats.

TerAvest MA, He Z, Rosenbaum MA, Martens EC, Cotta MA, Gordon JI, Angenent LT.

Biotechnol Bioeng. 2014 Jan;111(1):165-73. doi: 10.1002/bit.24994. Epub 2013 Jul 30.

PMID:
23996813
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Effects of diet on resource utilization by a model human gut microbiota containing Bacteroides cellulosilyticus WH2, a symbiont with an extensive glycobiome.

McNulty NP, Wu M, Erickson AR, Pan C, Erickson BK, Martens EC, Pudlo NA, Muegge BD, Henrissat B, Hettich RL, Gordon JI.

PLoS Biol. 2013;11(8):e1001637. doi: 10.1371/journal.pbio.1001637. Epub 2013 Aug 20.

PMID:
23976882
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Metabolic niche of a prominent sulfate-reducing human gut bacterium.

Rey FE, Gonzalez MD, Cheng J, Wu M, Ahern PP, Gordon JI.

Proc Natl Acad Sci U S A. 2013 Aug 13;110(33):13582-7. doi: 10.1073/pnas.1312524110. Epub 2013 Jul 29.

PMID:
23898195
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Meta-analyses of studies of the human microbiota.

Lozupone CA, Stombaugh J, Gonzalez A, Ackermann G, Wendel D, Vázquez-Baeza Y, Jansson JK, Gordon JI, Knight R.

Genome Res. 2013 Oct;23(10):1704-14. doi: 10.1101/gr.151803.112. Epub 2013 Jul 16.

PMID:
23861384
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

The long-term stability of the human gut microbiota.

Faith JJ, Guruge JL, Charbonneau M, Subramanian S, Seedorf H, Goodman AL, Clemente JC, Knight R, Heath AC, Leibel RL, Rosenbaum M, Gordon JI.

Science. 2013 Jul 5;341(6141):1237439. doi: 10.1126/science.1237439.

PMID:
23828941
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

The abundance and variety of carbohydrate-active enzymes in the human gut microbiota.

El Kaoutari A, Armougom F, Gordon JI, Raoult D, Henrissat B.

Nat Rev Microbiol. 2013 Jul;11(7):497-504. doi: 10.1038/nrmicro3050. Epub 2013 Jun 10.

PMID:
23748339
[PubMed - indexed for MEDLINE]
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