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Results: 1 to 20 of 33

1.

Causes and consequences of chromatin variation between inbred mice.

Hosseini M, Goodstadt L, Hughes JR, Kowalczyk MS, de Gobbi M, Otto GW, Copley RR, Mott R, Higgs DR, Flint J.

PLoS Genet. 2013 Jun;9(6):e1003570. doi: 10.1371/journal.pgen.1003570. Epub 2013 Jun 13.

PMID:
23785304
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Sequence-based characterization of structural variation in the mouse genome.

Yalcin B, Wong K, Agam A, Goodson M, Keane TM, Gan X, Nellåker C, Goodstadt L, Nicod J, Bhomra A, Hernandez-Pliego P, Whitley H, Cleak J, Dutton R, Janowitz D, Mott R, Adams DJ, Flint J.

Nature. 2011 Sep 14;477(7364):326-9. doi: 10.1038/nature10432.

PMID:
21921916
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Mouse genomic variation and its effect on phenotypes and gene regulation.

Keane TM, Goodstadt L, Danecek P, White MA, Wong K, Yalcin B, Heger A, Agam A, Slater G, Goodson M, Furlotte NA, Eskin E, Nellåker C, Whitley H, Cleak J, Janowitz D, Hernandez-Pliego P, Edwards A, Belgard TG, Oliver PL, McIntyre RE, Bhomra A, Nicod J, Gan X, Yuan W, van der Weyden L, Steward CA, Bala S, Stalker J, Mott R, Durbin R, Jackson IJ, Czechanski A, Guerra-Assunção JA, Donahue LR, Reinholdt LG, Payseur BA, Ponting CP, Birney E, Flint J, Adams DJ.

Nature. 2011 Sep 14;477(7364):289-94. doi: 10.1038/nature10413.

PMID:
21921910
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Collaborative Cross mice and their power to map host susceptibility to Aspergillus fumigatus infection.

Durrant C, Tayem H, Yalcin B, Cleak J, Goodstadt L, de Villena FP, Mott R, Iraqi FA.

Genome Res. 2011 Aug;21(8):1239-48. doi: 10.1101/gr.118786.110. Epub 2011 Apr 14.

PMID:
21493779
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Ruffus: a lightweight Python library for computational pipelines.

Goodstadt L.

Bioinformatics. 2010 Nov 1;26(21):2778-9. doi: 10.1093/bioinformatics/btq524. Epub 2010 Sep 16.

PMID:
20847218
[PubMed - indexed for MEDLINE]
Free Article
6.

Long noncoding RNA genes: conservation of sequence and brain expression among diverse amniotes.

Chodroff RA, Goodstadt L, Sirey TM, Oliver PL, Davies KE, Green ED, Molnár Z, Ponting CP.

Genome Biol. 2010;11(7):R72. doi: 10.1186/gb-2010-11-7-r72. Epub 2010 Jul 12.

PMID:
20624288
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Is the control of recombination conserved among diverse eukaryotes?

Goodstadt L, Ponting CP.

Heredity (Edinb). 2011 May;106(5):710-1. doi: 10.1038/hdy.2010.88. Epub 2010 Jul 7. No abstract available.

PMID:
20606688
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Accelerated evolution of the Prdm9 speciation gene across diverse metazoan taxa.

Oliver PL, Goodstadt L, Bayes JJ, Birtle Z, Roach KC, Phadnis N, Beatson SA, Lunter G, Malik HS, Ponting CP.

PLoS Genet. 2009 Dec;5(12):e1000753. doi: 10.1371/journal.pgen.1000753. Epub 2009 Dec 4.

PMID:
19997497
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Separating derived from ancestral features of mouse and human genomes.

Ponting CP, Goodstadt L.

Biochem Soc Trans. 2009 Aug;37(Pt 4):734-9. doi: 10.1042/BST0370734.

PMID:
19614585
[PubMed - indexed for MEDLINE]
10.

Lineage-specific biology revealed by a finished genome assembly of the mouse.

Church DM, Goodstadt L, Hillier LW, Zody MC, Goldstein S, She X, Bult CJ, Agarwala R, Cherry JL, DiCuccio M, Hlavina W, Kapustin Y, Meric P, Maglott D, Birtle Z, Marques AC, Graves T, Zhou S, Teague B, Potamousis K, Churas C, Place M, Herschleb J, Runnheim R, Forrest D, Amos-Landgraf J, Schwartz DC, Cheng Z, Lindblad-Toh K, Eichler EE, Ponting CP; Mouse Genome Sequencing Consortium.

PLoS Biol. 2009 May 5;7(5):e1000112. doi: 10.1371/journal.pbio.1000112. Epub 2009 May 26.

PMID:
19468303
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

EYS, encoding an ortholog of Drosophila spacemaker, is mutated in autosomal recessive retinitis pigmentosa.

Abd El-Aziz MM, Barragan I, O'Driscoll CA, Goodstadt L, Prigmore E, Borrego S, Mena M, Pieras JI, El-Ashry MF, Safieh LA, Shah A, Cheetham ME, Carter NP, Chakarova C, Ponting CP, Bhattacharya SS, Antinolo G.

Nat Genet. 2008 Nov;40(11):1285-7. doi: 10.1038/ng.241. Epub 2008 Oct 5.

PMID:
18836446
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences.

Mikkelsen TS, Wakefield MJ, Aken B, Amemiya CT, Chang JL, Duke S, Garber M, Gentles AJ, Goodstadt L, Heger A, Jurka J, Kamal M, Mauceli E, Searle SM, Sharpe T, Baker ML, Batzer MA, Benos PV, Belov K, Clamp M, Cook A, Cuff J, Das R, Davidow L, Deakin JE, Fazzari MJ, Glass JL, Grabherr M, Greally JM, Gu W, Hore TA, Huttley GA, Kleber M, Jirtle RL, Koina E, Lee JT, Mahony S, Marra MA, Miller RD, Nicholls RD, Oda M, Papenfuss AT, Parra ZE, Pollock DD, Ray DA, Schein JE, Speed TP, Thompson K, VandeBerg JL, Wade CM, Walker JA, Waters PD, Webber C, Weidman JR, Xie X, Zody MC; Broad Institute Genome Sequencing Platform; Broad Institute Whole Genome Assembly Team, Graves JA, Ponting CP, Breen M, Samollow PB, Lander ES, Lindblad-Toh K.

Nature. 2007 May 10;447(7141):167-77.

PMID:
17495919
[PubMed - indexed for MEDLINE]
13.

An analysis of the gene complement of a marsupial, Monodelphis domestica: evolution of lineage-specific genes and giant chromosomes.

Goodstadt L, Heger A, Webber C, Ponting CP.

Genome Res. 2007 Jul;17(7):969-81. Epub 2007 May 10.

PMID:
17495010
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Phylogenetic reconstruction of orthology, paralogy, and conserved synteny for dog and human.

Goodstadt L, Ponting CP.

PLoS Comput Biol. 2006 Sep 29;2(9):e133.

PMID:
17009864
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

17beta-estradiol potentiates the cardiac cystic fibrosis transmembrane conductance regulator chloride current in guinea-pig ventricular myocytes.

Goodstadt L, Powell T, Figtree GA.

J Physiol Sci. 2006 Feb;56(1):29-37.

PMID:
16779911
[PubMed - indexed for MEDLINE]
16.

Structure-function mapping of BbCRASP-1, the key complement factor H and FHL-1 binding protein of Borrelia burgdorferi.

Cordes FS, Kraiczy P, Roversi P, Simon MM, Brade V, Jahraus O, Wallis R, Goodstadt L, Ponting CP, Skerka C, Zipfel PF, Wallich R, Lea SM.

Int J Med Microbiol. 2006 May;296 Suppl 40:177-84. Epub 2006 Mar 10.

PMID:
16530476
[PubMed - indexed for MEDLINE]
17.

Genome sequence, comparative analysis and haplotype structure of the domestic dog.

Lindblad-Toh K, Wade CM, Mikkelsen TS, Karlsson EK, Jaffe DB, Kamal M, Clamp M, Chang JL, Kulbokas EJ 3rd, Zody MC, Mauceli E, Xie X, Breen M, Wayne RK, Ostrander EA, Ponting CP, Galibert F, Smith DR, DeJong PJ, Kirkness E, Alvarez P, Biagi T, Brockman W, Butler J, Chin CW, Cook A, Cuff J, Daly MJ, DeCaprio D, Gnerre S, Grabherr M, Kellis M, Kleber M, Bardeleben C, Goodstadt L, Heger A, Hitte C, Kim L, Koepfli KP, Parker HG, Pollinger JP, Searle SM, Sutter NB, Thomas R, Webber C, Baldwin J, Abebe A, Abouelleil A, Aftuck L, Ait-Zahra M, Aldredge T, Allen N, An P, Anderson S, Antoine C, Arachchi H, Aslam A, Ayotte L, Bachantsang P, Barry A, Bayul T, Benamara M, Berlin A, Bessette D, Blitshteyn B, Bloom T, Blye J, Boguslavskiy L, Bonnet C, Boukhgalter B, Brown A, Cahill P, Calixte N, Camarata J, Cheshatsang Y, Chu J, Citroen M, Collymore A, Cooke P, Dawoe T, Daza R, Decktor K, DeGray S, Dhargay N, Dooley K, Dooley K, Dorje P, Dorjee K, Dorris L, Duffey N, Dupes A, Egbiremolen O, Elong R, Falk J, Farina A, Faro S, Ferguson D, Ferreira P, Fisher S, FitzGerald M, Foley K, Foley C, Franke A, Friedrich D, Gage D, Garber M, Gearin G, Giannoukos G, Goode T, Goyette A, Graham J, Grandbois E, Gyaltsen K, Hafez N, Hagopian D, Hagos B, Hall J, Healy C, Hegarty R, Honan T, Horn A, Houde N, Hughes L, Hunnicutt L, Husby M, Jester B, Jones C, Kamat A, Kanga B, Kells C, Khazanovich D, Kieu AC, Kisner P, Kumar M, Lance K, Landers T, Lara M, Lee W, Leger JP, Lennon N, Leuper L, LeVine S, Liu J, Liu X, Lokyitsang Y, Lokyitsang T, Lui A, Macdonald J, Major J, Marabella R, Maru K, Matthews C, McDonough S, Mehta T, Meldrim J, Melnikov A, Meneus L, Mihalev A, Mihova T, Miller K, Mittelman R, Mlenga V, Mulrain L, Munson G, Navidi A, Naylor J, Nguyen T, Nguyen N, Nguyen C, Nguyen T, Nicol R, Norbu N, Norbu C, Novod N, Nyima T, Olandt P, O'Neill B, O'Neill K, Osman S, Oyono L, Patti C, Perrin D, Phunkhang P, Pierre F, Priest M, Rachupka A, Raghuraman S, Rameau R, Ray V, Raymond C, Rege F, Rise C, Rogers J, Rogov P, Sahalie J, Settipalli S, Sharpe T, Shea T, Sheehan M, Sherpa N, Shi J, Shih D, Sloan J, Smith C, Sparrow T, Stalker J, Stange-Thomann N, Stavropoulos S, Stone C, Stone S, Sykes S, Tchuinga P, Tenzing P, Tesfaye S, Thoulutsang D, Thoulutsang Y, Topham K, Topping I, Tsamla T, Vassiliev H, Venkataraman V, Vo A, Wangchuk T, Wangdi T, Weiand M, Wilkinson J, Wilson A, Yadav S, Yang S, Yang X, Young G, Yu Q, Zainoun J, Zembek L, Zimmer A, Lander ES.

Nature. 2005 Dec 8;438(7069):803-19.

PMID:
16341006
[PubMed - indexed for MEDLINE]
18.

Duplication and positive selection among hominin-specific PRAME genes.

Birtle Z, Goodstadt L, Ponting C.

BMC Genomics. 2005 Sep 13;6:120.

PMID:
16159394
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Statistical genetics: usual suspects in complex disease.

Ponting CP, Goodstadt L.

Eur J Hum Genet. 2005 Mar;13(3):269-70. No abstract available.

PMID:
15657602
[PubMed - indexed for MEDLINE]
Free Article
20.

Vitamin K epoxide reductase: homology, active site and catalytic mechanism.

Goodstadt L, Ponting CP.

Trends Biochem Sci. 2004 Jun;29(6):289-92.

PMID:
15276181
[PubMed - indexed for MEDLINE]

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