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Genomic Footprints in Selected and Unselected Beef Cattle Breeds in Korea.

Lim D, Strucken EM, Choi BH, Chai HH, Cho YM, Jang GW, Kim TH, Gondro C, Lee SH.

PLoS One. 2016 Mar 29;11(3):e0151324. doi: 10.1371/journal.pone.0151324. eCollection 2016.


Characterization and profiling of liver microRNAs by RNA-sequencing in cattle divergently selected for residual feed intake.

Al-Husseini W, Chen Y, Gondro C, Herd RM, Gibson JP, Arthur PF.

Asian-Australas J Anim Sci. 2015 Dec 15. doi: 10.5713/ajas.15.0605. [Epub ahead of print]


Comparison of linkage disequilibrium levels in Iranian indigenous cattle using whole genome SNPs data.

Karimi K, Esmailizadeh Koshkoiyeh A, Gondro C.

J Anim Sci Technol. 2015 Dec 24;57:47. doi: 10.1186/s40781-015-0080-2. eCollection 2015.


Towards breed formation by island model divergence in Korean cattle.

Strucken EM, Lee SH, Jang GW, Porto-Neto LR, Gondro C.

BMC Evol Biol. 2015 Dec 18;15:284. doi: 10.1186/s12862-015-0563-2.


Genome-wide linkage disequilibrium and genetic diversity in five populations of Australian domestic sheep.

Al-Mamun HA, Clark SA, Kwan P, Gondro C.

Genet Sel Evol. 2015 Nov 24;47:90. doi: 10.1186/s12711-015-0169-6.


Genome-wide association study of body weight in Australian Merino sheep reveals an orthologous region on OAR6 to human and bovine genomic regions affecting height and weight.

Al-Mamun HA, Kwan P, Clark SA, Ferdosi MH, Tellam R, Gondro C.

Genet Sel Evol. 2015 Aug 14;47:66. doi: 10.1186/s12711-015-0142-4.


How many markers are enough? Factors influencing parentage testing in different livestock populations.

Strucken EM, Lee SH, Lee HK, Song KD, Gibson JP, Gondro C.

J Anim Breed Genet. 2016 Feb;133(1):13-23. doi: 10.1111/jbg.12179. Epub 2015 Aug 2.


SNPQC--an R pipeline for quality control of Illumina SNP genotyping array data.

Gondro C, Porto-Neto LR, Lee SH.

Anim Genet. 2014 Oct;45(5):758-61. doi: 10.1111/age.12198. Epub 2014 Jul 18.


hsphase: an R package for pedigree reconstruction, detection of recombination events, phasing and imputation of half-sib family groups.

Ferdosi MH, Kinghorn BP, van der Werf JH, Lee SH, Gondro C.

BMC Bioinformatics. 2014 Jun 7;15:172. doi: 10.1186/1471-2105-15-172.


Molecular analyses provide insight into mechanisms underlying sarcopenia and myofibre denervation in old skeletal muscles of mice.

Barns M, Gondro C, Tellam RL, Radley-Crabb HG, Grounds MD, Shavlakadze T.

Int J Biochem Cell Biol. 2014 Aug;53:174-85. doi: 10.1016/j.biocel.2014.04.025. Epub 2014 May 13.


Performance of different SNP panels for parentage testing in two East Asian cattle breeds.

Strucken EM, Gudex B, Ferdosi MH, Lee HK, Song KD, Gibson JP, Kelly M, Piper EK, Porto-Neto LR, Lee SH, Gondro C.

Anim Genet. 2014 Aug;45(4):572-5. doi: 10.1111/age.12154. Epub 2014 Apr 15.


Genomic architecture of histone 3 lysine 27 trimethylation during late ovine skeletal muscle development.

Byrne K, McWilliam S, Vuocolo T, Gondro C, Cockett NE, Tellam RL.

Anim Genet. 2014 Jun;45(3):427-38. doi: 10.1111/age.12145. Epub 2014 Mar 27.


Detection of recombination events, haplotype reconstruction and imputation of sires using half-sib SNP genotypes.

Ferdosi MH, Kinghorn BP, van der Werf JH, Gondro C.

Genet Sel Evol. 2014 Feb 4;46:11. doi: 10.1186/1297-9686-46-11.


Genome-wide detection of signatures of selection in Korean Hanwoo cattle.

Porto-Neto LR, Lee SH, Sonstegard TS, Van Tassell CP, Lee HK, Gibson JP, Gondro C.

Anim Genet. 2014 Apr;45(2):180-90. doi: 10.1111/age.12119. Epub 2014 Feb 4.


Mutations in calpastatin and μ-calpain are associated with meat tenderness, flavor and juiciness in Hanwoo (Korean cattle): molecular modeling of the effects of substitutions in the calpastatin/μ-calpain complex.

Lee SH, Kim SC, Chai HH, Cho SH, Kim HC, Lim D, Choi BH, Dang CG, Sharma A, Gondro C, Yang BS, Hong SK.

Meat Sci. 2014 Apr;96(4):1501-8. doi: 10.1016/j.meatsci.2013.11.026. Epub 2013 Dec 31.


A p53-like transcription factor similar to Ndt80 controls the response to nutrient stress in the filamentous fungus, Aspergillus nidulans.

Katz ME, Braunberger K, Yi G, Cooper S, Nonhebel HM, Gondro C.

F1000Res. 2013 Mar 4;2:72. doi: 10.12688/f1000research.2-72.v1. eCollection 2013.


Genomic divergence of zebu and taurine cattle identified through high-density SNP genotyping.

Porto-Neto LR, Sonstegard TS, Liu GE, Bickhart DM, Da Silva MV, Machado MA, Utsunomiya YT, Garcia JF, Gondro C, Van Tassell CP.

BMC Genomics. 2013 Dec 13;14:876. doi: 10.1186/1471-2164-14-876.


The ovarian transcriptome of the cattle tick, Rhipicephalus (Boophilus) microplus, feeding upon a bovine host infected with Babesia bovis.

Heekin AM, Guerrero FD, Bendele KG, Saldivar L, Scoles GA, Dowd SE, Gondro C, Nene V, Djikeng A, Brayton KA.

Parasit Vectors. 2013 Sep 23;6:276. doi: 10.1186/1756-3305-6-276.


Expression of candidate genes for residual feed intake in Angus cattle.

Al-Husseini W, Gondro C, Quinn K, Herd RM, Gibson JP, Chen Y.

Anim Genet. 2014 Feb;45(1):12-9. doi: 10.1111/age.12092. Epub 2013 Oct 18.


Genome-wide association study identifies major loci for carcass weight on BTA14 in Hanwoo (Korean cattle).

Lee SH, Choi BH, Lim D, Gondro C, Cho YM, Dang CG, Sharma A, Jang GW, Lee KT, Yoon D, Lee HK, Yeon SH, Yang BS, Kang HS, Hong SK.

PLoS One. 2013 Oct 7;8(10):e74677. doi: 10.1371/journal.pone.0074677. eCollection 2013.

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