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Results: 1 to 20 of 38

1.

SNPQC--an R pipeline for quality control of Illumina SNP genotyping array data.

Gondro C, Porto-Neto LR, Lee SH.

Anim Genet. 2014 Oct;45(5):758-61. doi: 10.1111/age.12198. Epub 2014 Jul 18.

PMID:
25040453
2.

hsphase: an R package for pedigree reconstruction, detection of recombination events, phasing and imputation of half-sib family groups.

Ferdosi MH, Kinghorn BP, van der Werf JH, Lee SH, Gondro C.

BMC Bioinformatics. 2014 Jun 7;15:172. doi: 10.1186/1471-2105-15-172.

3.

Molecular analyses provide insight into mechanisms underlying sarcopenia and myofibre denervation in old skeletal muscles of mice.

Barns M, Gondro C, Tellam RL, Radley-Crabb HG, Grounds MD, Shavlakadze T.

Int J Biochem Cell Biol. 2014 Aug;53:174-85. doi: 10.1016/j.biocel.2014.04.025. Epub 2014 May 13.

PMID:
24836906
4.

Performance of different SNP panels for parentage testing in two East Asian cattle breeds.

Strucken EM, Gudex B, Ferdosi MH, Lee HK, Song KD, Gibson JP, Kelly M, Piper EK, Porto-Neto LR, Lee SH, Gondro C.

Anim Genet. 2014 Aug;45(4):572-5. doi: 10.1111/age.12154. Epub 2014 Apr 15.

PMID:
24730981
5.

Genomic architecture of histone 3 lysine 27 trimethylation during late ovine skeletal muscle development.

Byrne K, McWilliam S, Vuocolo T, Gondro C, Cockett NE, Tellam RL.

Anim Genet. 2014 Jun;45(3):427-38. doi: 10.1111/age.12145. Epub 2014 Mar 27.

6.

Detection of recombination events, haplotype reconstruction and imputation of sires using half-sib SNP genotypes.

Ferdosi MH, Kinghorn BP, van der Werf JH, Gondro C.

Genet Sel Evol. 2014 Feb 4;46:11. doi: 10.1186/1297-9686-46-11.

7.

Genome-wide detection of signatures of selection in Korean Hanwoo cattle.

Porto-Neto LR, Lee SH, Sonstegard TS, Van Tassell CP, Lee HK, Gibson JP, Gondro C.

Anim Genet. 2014 Apr;45(2):180-90. doi: 10.1111/age.12119. Epub 2014 Feb 4.

PMID:
24494817
8.

Mutations in calpastatin and μ-calpain are associated with meat tenderness, flavor and juiciness in Hanwoo (Korean cattle): molecular modeling of the effects of substitutions in the calpastatin/μ-calpain complex.

Lee SH, Kim SC, Chai HH, Cho SH, Kim HC, Lim D, Choi BH, Dang CG, Sharma A, Gondro C, Yang BS, Hong SK.

Meat Sci. 2014 Apr;96(4):1501-8. doi: 10.1016/j.meatsci.2013.11.026. Epub 2013 Dec 31.

PMID:
24468663
9.

A p53-like transcription factor similar to Ndt80 controls the response to nutrient stress in the filamentous fungus, Aspergillus nidulans.

Katz ME, Braunberger K, Yi G, Cooper S, Nonhebel HM, Gondro C.

F1000Res. 2013 Mar 4;2:72. doi: 10.12688/f1000research.2-72.v1. eCollection 2013.

10.

Genomic divergence of zebu and taurine cattle identified through high-density SNP genotyping.

Porto-Neto LR, Sonstegard TS, Liu GE, Bickhart DM, Da Silva MV, Machado MA, Utsunomiya YT, Garcia JF, Gondro C, Van Tassell CP.

BMC Genomics. 2013 Dec 13;14:876. doi: 10.1186/1471-2164-14-876.

11.

The ovarian transcriptome of the cattle tick, Rhipicephalus (Boophilus) microplus, feeding upon a bovine host infected with Babesia bovis.

Heekin AM, Guerrero FD, Bendele KG, Saldivar L, Scoles GA, Dowd SE, Gondro C, Nene V, Djikeng A, Brayton KA.

Parasit Vectors. 2013 Sep 23;6:276. doi: 10.1186/1756-3305-6-276.

12.

Expression of candidate genes for residual feed intake in Angus cattle.

Al-Husseini W, Gondro C, Quinn K, Herd RM, Gibson JP, Chen Y.

Anim Genet. 2014 Feb;45(1):12-9. doi: 10.1111/age.12092. Epub 2013 Oct 18.

PMID:
24134470
13.

Genome-wide association study identifies major loci for carcass weight on BTA14 in Hanwoo (Korean cattle).

Lee SH, Choi BH, Lim D, Gondro C, Cho YM, Dang CG, Sharma A, Jang GW, Lee KT, Yoon D, Lee HK, Yeon SH, Yang BS, Kang HS, Hong SK.

PLoS One. 2013 Oct 7;8(10):e74677. doi: 10.1371/journal.pone.0074677. eCollection 2013.

14.

Detection of signatures of selection using Fst.

Porto-Neto LR, Lee SH, Lee HK, Gondro C.

Methods Mol Biol. 2013;1019:423-36. doi: 10.1007/978-1-62703-447-0_19.

PMID:
23756903
15.

Quality control for genome-wide association studies.

Gondro C, Lee SH, Lee HK, Porto-Neto LR.

Methods Mol Biol. 2013;1019:129-47. doi: 10.1007/978-1-62703-447-0_5. Review.

PMID:
23756889
16.

R for genome-wide association studies.

Gondro C, Porto-Neto LR, Lee SH.

Methods Mol Biol. 2013;1019:1-17. doi: 10.1007/978-1-62703-447-0_1.

PMID:
23756885
17.

Gut transcriptome of replete adult female cattle ticks, Rhipicephalus (Boophilus) microplus, feeding upon a Babesia bovis-infected bovine host.

Heekin AM, Guerrero FD, Bendele KG, Saldivar L, Scoles GA, Dowd SE, Gondro C, Nene V, Djikeng A, Brayton KA.

Parasitol Res. 2013 Sep;112(9):3075-90. doi: 10.1007/s00436-013-3482-4. Epub 2013 Jun 10.

PMID:
23749091
18.

Heat stress effects on the cumulus cells surrounding the bovine oocyte during maturation: altered matrix metallopeptidase 9 and progesterone production.

Rispoli LA, Payton RR, Gondro C, Saxton AM, Nagle KA, Jenkins BW, Schrick FN, Edwards JL.

Reproduction. 2013 Aug 1;146(2):193-207. doi: 10.1530/REP-12-0487. Print 2013 Aug.

19.

Identification of recently selected mutations driven by artificial selection in hanwoo (korean cattle).

Lim D, Gondro C, Park HS, Cho YM, Chai HH, Seong HH, Yang BS, Hong SK, Chang WK, Lee SH.

Asian-Australas J Anim Sci. 2013 May;26(5):603-8. doi: 10.5713/ajas.2012.12456.

20.

Impact of fasting on the rhythmic expression of myogenic and metabolic factors in skeletal muscle of adult mice.

Shavlakadze T, Anwari T, Soffe Z, Cozens G, Mark PJ, Gondro C, Grounds MD.

Am J Physiol Cell Physiol. 2013 Jul 1;305(1):C26-35. doi: 10.1152/ajpcell.00027.2013. Epub 2013 Apr 17.

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