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Items: 13


Nucleotide binding database NBDB - a collection of sequence motifs with specific protein-ligand interactions.

Zheng Z, Goncearenco A, Berezovsky IN.

Nucleic Acids Res. 2015 Oct 26. pii: gkv1124. [Epub ahead of print]


Structural Perspectives on the Evolutionary Expansion of Unique Protein-Protein Binding Sites.

Goncearenco A, Shaytan AK, Shoemaker BA, Panchenko AR.

Biophys J. 2015 Sep 15;109(6):1295-306. doi: 10.1016/j.bpj.2015.06.056. Epub 2015 Jul 23.


6 Combined influence of linker DNA and histone tails on nucleosome dynamics as revealed by microsecond molecular dynamics simulations.

Shaytan AK, Armeev GA, Goncearenco A, Zhurkin VB, Landsman D, Panchenko AR.

J Biomol Struct Dyn. 2015 May;33 Suppl 1:3. doi: 10.1080/07391102.2015.1032630. No abstract available.


Protein function from its emergence to diversity in contemporary proteins.

Goncearenco A, Berezovsky IN.

Phys Biol. 2015 Jun 9;12(4):045002. doi: 10.1088/1478-3975/12/4/045002.


Coverage of protein domain families with structural protein-protein interactions: current progress and future trends.

Goncearenco A, Shoemaker BA, Zhang D, Sarychev A, Panchenko AR.

Prog Biophys Mol Biol. 2014 Nov-Dec;116(2-3):187-93. doi: 10.1016/j.pbiomolbio.2014.05.005. Epub 2014 Jun 13. Review.


Molecular mechanisms of adaptation emerging from the physics and evolution of nucleic acids and proteins.

Goncearenco A, Ma BG, Berezovsky IN.

Nucleic Acids Res. 2014 Mar;42(5):2879-92. doi: 10.1093/nar/gkt1336. Epub 2013 Dec 25.


SPACER: Server for predicting allosteric communication and effects of regulation.

Goncearenco A, Mitternacht S, Yong T, Eisenhaber B, Eisenhaber F, Berezovsky IN.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W266-72. doi: 10.1093/nar/gkt460. Epub 2013 Jun 3.


A dominant negative heterozygous G87R mutation in the zinc transporter, ZnT-2 (SLC30A2), results in transient neonatal zinc deficiency.

Lasry I, Seo YA, Ityel H, Shalva N, Pode-Shakked B, Glaser F, Berman B, Berezovsky I, Goncearenco A, Klar A, Levy J, Anikster Y, Kelleher SL, Assaraf YG.

J Biol Chem. 2012 Aug 24;287(35):29348-61. doi: 10.1074/jbc.M112.368159. Epub 2012 Jun 25.


Exploring the evolution of protein function in Archaea.

Goncearenco A, Berezovsky IN.

BMC Evol Biol. 2012 May 30;12:75.


Computational reconstruction of primordial prototypes of elementary functional loops in modern proteins.

Goncearenco A, Berezovsky IN.

Bioinformatics. 2011 Sep 1;27(17):2368-75. doi: 10.1093/bioinformatics/btr396. Epub 2011 Jun 30.


Prototypes of elementary functional loops unravel evolutionary connections between protein functions.

Goncearenco A, Berezovsky IN.

Bioinformatics. 2010 Sep 15;26(18):i497-503. doi: 10.1093/bioinformatics/btq374.


Thermophilic adaptation of protein complexes inferred from proteomic homology modeling.

Ma BG, Goncearenco A, Berezovsky IN.

Structure. 2010 Jul 14;18(7):819-28. doi: 10.1016/j.str.2010.04.004.

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