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Results: 1 to 20 of 345

1.

Ecological genomics in Xanthomonas: the nature of genetic adaptation with homologous recombination and host shifts.

Huang CL, Pu PH, Huang HJ, Sung HM, Liaw HJ, Chen YM, Chen CM, Huang MB, Osada N, Gojobori T, Pai TW, Chen YT, Hwang CC, Chiang TY.

BMC Genomics. 2015 Mar 15;16:188. doi: 10.1186/s12864-015-1369-8.

2.

Function and evolutionary origin of unicellular camera-type eye structure.

Hayakawa S, Takaku Y, Hwang JS, Horiguchi T, Suga H, Gehring W, Ikeo K, Gojobori T.

PLoS One. 2015 Mar 3;10(3):e0118415. doi: 10.1371/journal.pone.0118415. eCollection 2015.

3.

Adaptive divergence with gene flow in incipient speciation of Miscanthus floridulus/sinensis complex (Poaceae).

Huang CL, Ho CW, Chiang YC, Shigemoto Y, Hsu TW, Hwang CC, Ge XJ, Chen C, Wu TH, Chou CH, Huang HJ, Gojobori T, Osada N, Chiang TY.

Plant J. 2014 Dec;80(5):834-47. doi: 10.1111/tpj.12676. Epub 2014 Nov 11.

PMID:
25237766
4.

Dopamine receptor genes and evolutionary differentiation in the domestication of fighting cocks and long-crowing chickens.

Komiyama T, Iwama H, Osada N, Nakamura Y, Kobayashi H, Tateno Y, Gojobori T.

PLoS One. 2014 Jul 31;9(7):e101778. doi: 10.1371/journal.pone.0101778. eCollection 2014.

5.

Evolutionarily conserved transcription factor Apontic controls the G1/S progression by inducing cyclin E during eye development.

Liu QX, Wang XF, Ikeo K, Hirose S, Gehring WJ, Gojobori T.

Proc Natl Acad Sci U S A. 2014 Jul 1;111(26):9497-502. doi: 10.1073/pnas.1407145111. Epub 2014 Jun 16.

6.

Human genome network platform: a resource for TFRN analysis.

Monma N, Gojobori T, Ikeo K.

Methods Mol Biol. 2014;1164:147-62. doi: 10.1007/978-1-4939-0805-9_12.

PMID:
24927841
7.

Coevolution of axon guidance molecule Slit and its receptor Robo.

Yu Q, Li XT, Zhao X, Liu XL, Ikeo K, Gojobori T, Liu QX.

PLoS One. 2014 May 6;9(5):e94970. doi: 10.1371/journal.pone.0094970. eCollection 2014.

8.

Innexin gap junctions in nerve cells coordinate spontaneous contractile behavior in Hydra polyps.

Takaku Y, Hwang JS, Wolf A, Böttger A, Shimizu H, David CN, Gojobori T.

Sci Rep. 2014 Jan 7;4:3573. doi: 10.1038/srep03573. Erratum in: Sci Rep. 2014;4:4009.

9.

Tissue- and stage-dependent dosage compensation on the neo-X chromosome in Drosophila pseudoobscura.

Nozawa M, Fukuda N, Ikeo K, Gojobori T.

Mol Biol Evol. 2014 Mar;31(3):614-24. doi: 10.1093/molbev/mst239. Epub 2013 Dec 3.

10.

Computational analysis and functional expression of ancestral copepod luciferase.

Takenaka Y, Noda-Ogura A, Imanishi T, Yamaguchi A, Gojobori T, Shigeri Y.

Gene. 2013 Oct 10;528(2):201-5. doi: 10.1016/j.gene.2013.07.011. Epub 2013 Jul 23.

PMID:
23886588
11.

Evolutionary changes of multiple visual pigment genes in the complete genome of Pacific bluefin tuna.

Nakamura Y, Mori K, Saitoh K, Oshima K, Mekuchi M, Sugaya T, Shigenobu Y, Ojima N, Muta S, Fujiwara A, Yasuike M, Oohara I, Hirakawa H, Chowdhury VS, Kobayashi T, Nakajima K, Sano M, Wada T, Tashiro K, Ikeo K, Hattori M, Kuhara S, Gojobori T, Inouye K.

Proc Natl Acad Sci U S A. 2013 Jul 2;110(27):11061-6. doi: 10.1073/pnas.1302051110. Epub 2013 Jun 18.

12.

The first symbiont-free genome sequence of marine red alga, Susabi-nori (Pyropia yezoensis).

Nakamura Y, Sasaki N, Kobayashi M, Ojima N, Yasuike M, Shigenobu Y, Satomi M, Fukuma Y, Shiwaku K, Tsujimoto A, Kobayashi T, Nakayama I, Ito F, Nakajima K, Sano M, Wada T, Kuhara S, Inouye K, Gojobori T, Ikeo K.

PLoS One. 2013;8(3):e57122. doi: 10.1371/journal.pone.0057122. Epub 2013 Mar 11.

13.

Comparison of gene expression profile of epiretinal membranes obtained from eyes with proliferative vitreoretinopathy to that of secondary epiretinal membranes.

Asato R, Yoshida S, Ogura A, Nakama T, Ishikawa K, Nakao S, Sassa Y, Enaida H, Oshima Y, Ikeo K, Gojobori T, Kono T, Ishibashi T.

PLoS One. 2013;8(1):e54191. doi: 10.1371/journal.pone.0054191. Epub 2013 Jan 23. Erratum in: PLoS One. 2013;8(4). doi:10.1371/annotation/6032dd20-65b4-4d4d-bef6-7ba2ef6d3591.

14.

Dynamic evolution of endogenous retrovirus-derived genes expressed in bovine conceptuses during the period of placentation.

Nakagawa S, Bai H, Sakurai T, Nakaya Y, Konno T, Miyazawa T, Gojobori T, Imakawa K.

Genome Biol Evol. 2013;5(2):296-306. doi: 10.1093/gbe/evt007.

15.

Clone identification in Japanese flowering cherry (Prunus subgenus Cerasus) cultivars using nuclear SSR markers.

Kato S, Matsumoto A, Yoshimura K, Katsuki T, Iwamoto K, Tsuda Y, Ishio S, Nakamura K, Moriwaki K, Shiroishi T, Gojobori T, Yoshimaru H.

Breed Sci. 2012 Sep;62(3):248-55. doi: 10.1270/jsbbs.62.248. Epub 2012 Nov 1.

16.

H-InvDB in 2013: an omics study platform for human functional gene and transcript discovery.

Takeda J, Yamasaki C, Murakami K, Nagai Y, Sera M, Hara Y, Obi N, Habara T, Gojobori T, Imanishi T.

Nucleic Acids Res. 2013 Jan;41(Database issue):D915-9. doi: 10.1093/nar/gks1245. Epub 2012 Nov 28.

17.

Prediction of protein-destabilizing polymorphisms by manual curation with protein structure.

Gough CA, Homma K, Yamaguchi-Kabata Y, Shimada MK, Chakraborty R, Fujii Y, Iwama H, Minoshima S, Sakamoto S, Sato Y, Suzuki Y, Tada-Umezaki M, Nishikawa K, Imanishi T, Gojobori T.

PLoS One. 2012;7(11):e50445. doi: 10.1371/journal.pone.0050445. Epub 2012 Nov 26.

18.

Comparative genome analysis of three eukaryotic parasites with differing abilities to transform leukocytes reveals key mediators of Theileria-induced leukocyte transformation.

Hayashida K, Hara Y, Abe T, Yamasaki C, Toyoda A, Kosuge T, Suzuki Y, Sato Y, Kawashima S, Katayama T, Wakaguri H, Inoue N, Homma K, Tada-Umezaki M, Yagi Y, Fujii Y, Habara T, Kanehisa M, Watanabe H, Ito K, Gojobori T, Sugawara H, Imanishi T, Weir W, Gardner M, Pain A, Shiels B, Hattori M, Nene V, Sugimoto C.

MBio. 2012 Sep 4;3(5):e00204-12. doi: 10.1128/mBio.00204-12. Print 2012.

19.

Infectious endogenous retroviruses in cats and emergence of recombinant viruses.

Anai Y, Ochi H, Watanabe S, Nakagawa S, Kawamura M, Gojobori T, Nishigaki K.

J Virol. 2012 Aug;86(16):8634-44. doi: 10.1128/JVI.00280-12. Epub 2012 Jun 6.

20.

TP Atlas: integration and dissemination of advances in Targeted Proteins Research Program (TPRP)-structural biology project phase II in Japan.

Iwayanagi T, Miyamoto S, Konno T, Mizutani H, Hirai T, Shigemoto Y, Gojobori T, Sugawara H.

J Struct Funct Genomics. 2012 Sep;13(3):145-54. doi: 10.1007/s10969-012-9139-1. Epub 2012 May 29.

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