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Results: 1 to 20 of 342

1.

Dopamine receptor genes and evolutionary differentiation in the domestication of fighting cocks and long-crowing chickens.

Komiyama T, Iwama H, Osada N, Nakamura Y, Kobayashi H, Tateno Y, Gojobori T.

PLoS One. 2014 Jul 31;9(7):e101778. doi: 10.1371/journal.pone.0101778. eCollection 2014.

PMID:
25078403
[PubMed - in process]
Free PMC Article
2.

Evolutionarily conserved transcription factor Apontic controls the G1/S progression by inducing cyclin E during eye development.

Liu QX, Wang XF, Ikeo K, Hirose S, Gehring WJ, Gojobori T.

Proc Natl Acad Sci U S A. 2014 Jul 1;111(26):9497-502. doi: 10.1073/pnas.1407145111. Epub 2014 Jun 16.

PMID:
24979795
[PubMed - in process]
Free PMC Article
3.

Human genome network platform: a resource for TFRN analysis.

Monma N, Gojobori T, Ikeo K.

Methods Mol Biol. 2014;1164:147-62. doi: 10.1007/978-1-4939-0805-9_12.

PMID:
24927841
[PubMed - in process]
4.

Coevolution of axon guidance molecule Slit and its receptor Robo.

Yu Q, Li XT, Zhao X, Liu XL, Ikeo K, Gojobori T, Liu QX.

PLoS One. 2014 May 6;9(5):e94970. doi: 10.1371/journal.pone.0094970. eCollection 2014.

PMID:
24801615
[PubMed - in process]
Free PMC Article
5.

Innexin gap junctions in nerve cells coordinate spontaneous contractile behavior in Hydra polyps.

Takaku Y, Hwang JS, Wolf A, Böttger A, Shimizu H, David CN, Gojobori T.

Sci Rep. 2014 Jan 7;4:3573. doi: 10.1038/srep03573. Erratum in: Sci Rep. 2014;4:4009.

PMID:
24394722
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Tissue- and stage-dependent dosage compensation on the neo-X chromosome in Drosophila pseudoobscura.

Nozawa M, Fukuda N, Ikeo K, Gojobori T.

Mol Biol Evol. 2014 Mar;31(3):614-24. doi: 10.1093/molbev/mst239. Epub 2013 Dec 3.

PMID:
24307686
[PubMed - in process]
7.

Computational analysis and functional expression of ancestral copepod luciferase.

Takenaka Y, Noda-Ogura A, Imanishi T, Yamaguchi A, Gojobori T, Shigeri Y.

Gene. 2013 Oct 10;528(2):201-5. doi: 10.1016/j.gene.2013.07.011. Epub 2013 Jul 23.

PMID:
23886588
[PubMed - indexed for MEDLINE]
8.

Evolutionary changes of multiple visual pigment genes in the complete genome of Pacific bluefin tuna.

Nakamura Y, Mori K, Saitoh K, Oshima K, Mekuchi M, Sugaya T, Shigenobu Y, Ojima N, Muta S, Fujiwara A, Yasuike M, Oohara I, Hirakawa H, Chowdhury VS, Kobayashi T, Nakajima K, Sano M, Wada T, Tashiro K, Ikeo K, Hattori M, Kuhara S, Gojobori T, Inouye K.

Proc Natl Acad Sci U S A. 2013 Jul 2;110(27):11061-6. doi: 10.1073/pnas.1302051110. Epub 2013 Jun 18.

PMID:
23781100
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

The first symbiont-free genome sequence of marine red alga, Susabi-nori (Pyropia yezoensis).

Nakamura Y, Sasaki N, Kobayashi M, Ojima N, Yasuike M, Shigenobu Y, Satomi M, Fukuma Y, Shiwaku K, Tsujimoto A, Kobayashi T, Nakayama I, Ito F, Nakajima K, Sano M, Wada T, Kuhara S, Inouye K, Gojobori T, Ikeo K.

PLoS One. 2013;8(3):e57122. doi: 10.1371/journal.pone.0057122. Epub 2013 Mar 11.

PMID:
23536760
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Comparison of gene expression profile of epiretinal membranes obtained from eyes with proliferative vitreoretinopathy to that of secondary epiretinal membranes.

Asato R, Yoshida S, Ogura A, Nakama T, Ishikawa K, Nakao S, Sassa Y, Enaida H, Oshima Y, Ikeo K, Gojobori T, Kono T, Ishibashi T.

PLoS One. 2013;8(1):e54191. doi: 10.1371/journal.pone.0054191. Epub 2013 Jan 23. Erratum in: PLoS One. 2013;8(4). doi:10.1371/annotation/6032dd20-65b4-4d4d-bef6-7ba2ef6d3591.

PMID:
23372684
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Dynamic evolution of endogenous retrovirus-derived genes expressed in bovine conceptuses during the period of placentation.

Nakagawa S, Bai H, Sakurai T, Nakaya Y, Konno T, Miyazawa T, Gojobori T, Imakawa K.

Genome Biol Evol. 2013;5(2):296-306. doi: 10.1093/gbe/evt007.

PMID:
23335121
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Clone identification in Japanese flowering cherry (Prunus subgenus Cerasus) cultivars using nuclear SSR markers.

Kato S, Matsumoto A, Yoshimura K, Katsuki T, Iwamoto K, Tsuda Y, Ishio S, Nakamura K, Moriwaki K, Shiroishi T, Gojobori T, Yoshimaru H.

Breed Sci. 2012 Sep;62(3):248-55. doi: 10.1270/jsbbs.62.248. Epub 2012 Nov 1.

PMID:
23226085
[PubMed]
Free PMC Article
13.

H-InvDB in 2013: an omics study platform for human functional gene and transcript discovery.

Takeda J, Yamasaki C, Murakami K, Nagai Y, Sera M, Hara Y, Obi N, Habara T, Gojobori T, Imanishi T.

Nucleic Acids Res. 2013 Jan;41(Database issue):D915-9. doi: 10.1093/nar/gks1245. Epub 2012 Nov 28.

PMID:
23197657
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Prediction of protein-destabilizing polymorphisms by manual curation with protein structure.

Gough CA, Homma K, Yamaguchi-Kabata Y, Shimada MK, Chakraborty R, Fujii Y, Iwama H, Minoshima S, Sakamoto S, Sato Y, Suzuki Y, Tada-Umezaki M, Nishikawa K, Imanishi T, Gojobori T.

PLoS One. 2012;7(11):e50445. doi: 10.1371/journal.pone.0050445. Epub 2012 Nov 26.

PMID:
23189203
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Comparative genome analysis of three eukaryotic parasites with differing abilities to transform leukocytes reveals key mediators of Theileria-induced leukocyte transformation.

Hayashida K, Hara Y, Abe T, Yamasaki C, Toyoda A, Kosuge T, Suzuki Y, Sato Y, Kawashima S, Katayama T, Wakaguri H, Inoue N, Homma K, Tada-Umezaki M, Yagi Y, Fujii Y, Habara T, Kanehisa M, Watanabe H, Ito K, Gojobori T, Sugawara H, Imanishi T, Weir W, Gardner M, Pain A, Shiels B, Hattori M, Nene V, Sugimoto C.

MBio. 2012 Sep 4;3(5):e00204-12. doi: 10.1128/mBio.00204-12. Print 2012.

PMID:
22951932
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Infectious endogenous retroviruses in cats and emergence of recombinant viruses.

Anai Y, Ochi H, Watanabe S, Nakagawa S, Kawamura M, Gojobori T, Nishigaki K.

J Virol. 2012 Aug;86(16):8634-44. doi: 10.1128/JVI.00280-12. Epub 2012 Jun 6.

PMID:
22674983
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

TP Atlas: integration and dissemination of advances in Targeted Proteins Research Program (TPRP)-structural biology project phase II in Japan.

Iwayanagi T, Miyamoto S, Konno T, Mizutani H, Hirai T, Shigemoto Y, Gojobori T, Sugawara H.

J Struct Funct Genomics. 2012 Sep;13(3):145-54. doi: 10.1007/s10969-012-9139-1. Epub 2012 May 29.

PMID:
22644393
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Genome and transcriptome analysis of the food-yeast Candida utilis.

Tomita Y, Ikeo K, Tamakawa H, Gojobori T, Ikushima S.

PLoS One. 2012;7(5):e37226. doi: 10.1371/journal.pone.0037226. Epub 2012 May 18.

PMID:
22629373
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

The temporal sequence of the mammalian neocortical neurogenetic program drives mediolateral pattern in the chick pallium.

Suzuki IK, Kawasaki T, Gojobori T, Hirata T.

Dev Cell. 2012 Apr 17;22(4):863-70. doi: 10.1016/j.devcel.2012.01.004. Epub 2012 Mar 15.

PMID:
22424929
[PubMed - indexed for MEDLINE]
Free Article
20.

A new database (GCD) on genome composition for eukaryote and prokaryote genome sequences and their initial analyses.

Kryukov K, Sumiyama K, Ikeo K, Gojobori T, Saitou N.

Genome Biol Evol. 2012;4(4):501-12. doi: 10.1093/gbe/evs026. Epub 2012 Mar 14.

PMID:
22417913
[PubMed - indexed for MEDLINE]
Free PMC Article

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