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Results: 1 to 20 of 118

1.

The pan-genome as a shared genomic resource: mutual cheating, cooperation and the black queen hypothesis.

Fullmer MS, Soucy SM, Gogarten JP.

Front Microbiol. 2015 Jul 21;6:728. doi: 10.3389/fmicb.2015.00728. eCollection 2015. No abstract available.

2.

Horizontal gene transfer: building the web of life.

Soucy SM, Huang J, Gogarten JP.

Nat Rev Genet. 2015 Jul 17;16(8):472-82. doi: 10.1038/nrg3962.

PMID:
26184597
3.

Ancient horizontal gene transfer and the last common ancestors.

Fournier GP, Andam CP, Gogarten JP.

BMC Evol Biol. 2015 Apr 22;15:70. doi: 10.1186/s12862-015-0350-0.

4.

Comparative genomics of Roseobacter clade bacteria isolated from the accessory nidamental gland of Euprymna scolopes.

Collins AJ, Fullmer MS, Gogarten JP, Nyholm SV.

Front Microbiol. 2015 Feb 23;6:123. doi: 10.3389/fmicb.2015.00123. eCollection 2015.

5.

Bioinformatic genome comparisons for taxonomic and phylogenetic assignments using Aeromonas as a test case.

Colston SM, Fullmer MS, Beka L, Lamy B, Gogarten JP, Graf J.

MBio. 2014 Nov 18;5(6):e02136. doi: 10.1128/mBio.02136-14.

6.

Inteins as indicators of gene flow in the halobacteria.

Soucy SM, Fullmer MS, Papke RT, Gogarten JP.

Front Microbiol. 2014 Jun 26;5:299. doi: 10.3389/fmicb.2014.00299. eCollection 2014.

7.

AST: an automated sequence-sampling method for improving the taxonomic diversity of gene phylogenetic trees.

Zhou C, Mao F, Yin Y, Huang J, Gogarten JP, Xu Y.

PLoS One. 2014 Jun 3;9(6):e98844. doi: 10.1371/journal.pone.0098844. eCollection 2014.

8.

Evidence from phylogenetic and genome fingerprinting analyses suggests rapidly changing variation in Halorubrum and Haloarcula populations.

Ram Mohan N, Fullmer MS, Makkay AM, Wheeler R, Ventosa A, Naor A, Gogarten JP, Papke RT.

Front Microbiol. 2014 Apr 9;5:143. doi: 10.3389/fmicb.2014.00143. eCollection 2014.

9.

Population and genomic analysis of the genus Halorubrum.

Fullmer MS, Soucy SM, Swithers KS, Makkay AM, Wheeler R, Ventosa A, Gogarten JP, Papke RT.

Front Microbiol. 2014 Apr 11;5:140. doi: 10.3389/fmicb.2014.00140. eCollection 2014.

10.

Reconstructed ancestral Myo-inositol-3-phosphate synthases indicate that ancestors of the Thermococcales and Thermotoga species were more thermophilic than their descendants.

Butzin NC, Lapierre P, Green AG, Swithers KS, Gogarten JP, Noll KM.

PLoS One. 2013 Dec 31;8(12):e84300. doi: 10.1371/journal.pone.0084300. eCollection 2013.

11.

Distribution and evolution of the mobile vma-1b intein.

Swithers KS, Soucy SM, Lasek-Nesselquist E, Lapierre P, Gogarten JP.

Mol Biol Evol. 2013 Dec;30(12):2676-87. doi: 10.1093/molbev/mst164. Epub 2013 Sep 18.

12.

Thermotoga lettingae can salvage cobinamide to synthesize vitamin B12.

Butzin NC, Secinaro MA, Swithers KS, Gogarten JP, Noll KM.

Appl Environ Microbiol. 2013 Nov;79(22):7006-12. doi: 10.1128/AEM.01800-13. Epub 2013 Sep 6.

13.

Reconstruction of ancestral 16S rRNA reveals mutation bias in the evolution of optimal growth temperature in the Thermotogae phylum.

Green AG, Swithers KS, Gogarten JF, Gogarten JP.

Mol Biol Evol. 2013 Nov;30(11):2463-74. doi: 10.1093/molbev/mst145. Epub 2013 Aug 21.

14.

The effects of model choice and mitigating bias on the ribosomal tree of life.

Lasek-Nesselquist E, Gogarten JP.

Mol Phylogenet Evol. 2013 Oct;69(1):17-38. doi: 10.1016/j.ympev.2013.05.006. Epub 2013 May 22.

PMID:
23707703
15.

Systematic inference of highways of horizontal gene transfer in prokaryotes.

Bansal MS, Banay G, Harlow TJ, Gogarten JP, Shamir R.

Bioinformatics. 2013 Mar 1;29(5):571-9. doi: 10.1093/bioinformatics/btt021. Epub 2013 Jan 17.

16.

Pre-Posting and OLEB.

Schwartz AW, Cleaves HJ, Gogarten JP.

Orig Life Evol Biosph. 2012 Dec;42(6):517. doi: 10.1007/s11084-012-9317-y. No abstract available.

PMID:
23224850
17.

Quantifying homologous replacement of loci between haloarchaeal species.

Williams D, Gogarten JP, Papke RT.

Genome Biol Evol. 2012;4(12):1223-44. doi: 10.1093/gbe/evs098.

18.

The impact of HGT on phylogenomic reconstruction methods.

Lapierre P, Lasek-Nesselquist E, Gogarten JP.

Brief Bioinform. 2014 Jan;15(1):79-90. doi: 10.1093/bib/bbs050. Epub 2012 Aug 20.

PMID:
22908214
19.

The role of reticulate evolution in creating innovation and complexity.

Swithers KS, Soucy SM, Gogarten JP.

Int J Evol Biol. 2012;2012:418964. doi: 10.1155/2012/418964. Epub 2012 Jul 12.

20.

Vitamin B(12) synthesis and salvage pathways were acquired by horizontal gene transfer to the Thermotogales.

Swithers KS, Petrus AK, Secinaro MA, Nesbø CL, Gogarten JP, Noll KM, Butzin NC.

Genome Biol Evol. 2012;4(8):730-9. doi: 10.1093/gbe/evs057. Epub 2012 Jul 12.

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