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Results: 1 to 20 of 152

1.

Genomic avenue to avian colisepticemia.

Huja S, Oren Y, Trost E, Brzuszkiewicz E, Biran D, Blom J, Goesmann A, Gottschalk G, Hacker J, Ron EZ, Dobrindt U.

MBio. 2015 Jan 13;6(1). pii: e01681-14. doi: 10.1128/mBio.01681-14.

PMID:
25587010
[PubMed - in process]
Free Article
2.

Draft Genome Sequence of Pseudomonas aeruginosa Strain WS394, a Multidrug-Resistant and Highly Cytotoxic Wound Isolate from Chronic Ulcus Cruris.

Vorhölter FJ, Arnold M, Wibberg D, Blom J, Winkler A, Viehoever P, Albersmeier A, Goesmann A, Zange S, Heesemann J, Pühler A, Hogardt M.

Genome Announc. 2014 Dec 18;2(6). pii: e01325-14. doi: 10.1128/genomeA.01325-14.

PMID:
25523779
[PubMed]
Free PMC Article
3.

AKE - the Accelerated k -mer Exploration web-tool for rapid taxonomic classification and visualization.

Langenkämper D, Goesmann A, Nattkemper T.

BMC Bioinformatics. 2014 Dec 13;15(1):384. [Epub ahead of print]

PMID:
25495116
[PubMed - as supplied by publisher]
Free Article
4.

ALLocator: an interactive web platform for the analysis of metabolomic LC-ESI-MS datasets, enabling semi-automated, user-revised compound annotation and mass isotopomer ratio analysis.

Kessler N, Walter F, Persicke M, Albaum SP, Kalinowski J, Goesmann A, Niehaus K, Nattkemper TW.

PLoS One. 2014 Nov 26;9(11):e113909. doi: 10.1371/journal.pone.0113909. eCollection 2014.

PMID:
25426929
[PubMed - in process]
Free PMC Article
5.

Criblamydia sequanensis Harbors a Megaplasmid Encoding Arsenite Resistance.

Bertelli C, Goesmann A, Greub G.

Genome Announc. 2014 Oct 23;2(5). pii: e00949-14. doi: 10.1128/genomeA.00949-14.

PMID:
25342672
[PubMed]
Free PMC Article
6.

Transcriptome analysis of the phytopathogenic fungus Rhizoctonia solani AG1-IB 7/3/14 applying high-throughput sequencing of expressed sequence tags (ESTs).

Wibberg D, Jelonek L, Rupp O, Kröber M, Goesmann A, Grosch R, Pühler A, Schlüter A.

Fungal Biol. 2014 Sep-Oct;118(9-10):800-13. doi: 10.1016/j.funbio.2014.06.007. Epub 2014 Jul 17.

PMID:
25209639
[PubMed - in process]
7.

GABenchToB: a genome assembly benchmark tuned on bacteria and benchtop sequencers.

Jünemann S, Prior K, Albersmeier A, Albaum S, Kalinowski J, Goesmann A, Stoye J, Harmsen D.

PLoS One. 2014 Sep 8;9(9):e107014. doi: 10.1371/journal.pone.0107014. eCollection 2014.

PMID:
25198770
[PubMed - in process]
Free PMC Article
8.

Interclonal gradient of virulence in the Pseudomonas aeruginosa pangenome from disease and environment.

Hilker R, Munder A, Klockgether J, Losada PM, Chouvarine P, Cramer N, Davenport CF, Dethlefsen S, Fischer S, Peng H, Schönfelder T, Türk O, Wiehlmann L, Wölbeling F, Gulbins E, Goesmann A, Tümmler B.

Environ Microbiol. 2014 Aug 26. doi: 10.1111/1462-2920.12606. [Epub ahead of print]

PMID:
25156090
[PubMed - as supplied by publisher]
9.

Carbohydrate-active enzymes identified by metagenomic analysis of deep-sea sediment bacteria.

Klippel B, Sahm K, Basner A, Wiebusch S, John P, Lorenz U, Peters A, Abe F, Takahashi K, Kaiser O, Goesmann A, Jaenicke S, Grote R, Horikoshi K, Antranikian G.

Extremophiles. 2014 Sep;18(5):853-63. doi: 10.1007/s00792-014-0676-3. Epub 2014 Aug 10.

PMID:
25108363
[PubMed - in process]
10.

Discovery of transcription start sites in the Chinese hamster genome by next-generation RNA sequencing.

Jakobi T, Brinkrolf K, Tauch A, Noll T, Stoye J, Pühler A, Goesmann A.

J Biotechnol. 2014 Nov 20;190:64-75. doi: 10.1016/j.jbiotec.2014.07.437. Epub 2014 Jul 31.

PMID:
25086342
[PubMed - in process]
11.

Elucidation of insertion elements carried on plasmids and in vitro construction of shuttle vectors from the toxic cyanobacterium Planktothrix.

Christiansen G, Goesmann A, Kurmayer R.

Appl Environ Microbiol. 2014 Aug;80(16):4887-97. doi: 10.1128/AEM.01188-14. Epub 2014 Jun 6.

PMID:
24907328
[PubMed - in process]
12.

Comparative genome analysis of Pseudomonas knackmussii B13, the first bacterium known to degrade chloroaromatic compounds.

Miyazaki R, Bertelli C, Benaglio P, Canton J, De Coi N, Gharib WH, Gjoksi B, Goesmann A, Greub G, Harshman K, Linke B, Mikulic J, Mueller L, Nicolas D, Robinson-Rechavi M, Rivolta C, Roggo C, Roy S, Sentchilo V, Siebenthal AV, Falquet L, van der Meer JR.

Environ Microbiol. 2014 May 7. doi: 10.1111/1462-2920.12498. [Epub ahead of print]

PMID:
24803113
[PubMed - as supplied by publisher]
13.

ReadXplorer--visualization and analysis of mapped sequences.

Hilker R, Stadermann KB, Doppmeier D, Kalinowski J, Stoye J, Straube J, Winnebald J, Goesmann A.

Bioinformatics. 2014 Aug 15;30(16):2247-54. doi: 10.1093/bioinformatics/btu205. Epub 2014 Apr 30.

PMID:
24790157
[PubMed - in process]
Free PMC Article
14.

Complete genome sequence of the actinobacterium Actinoplanes friuliensis HAG 010964, producer of the lipopeptide antibiotic friulimycin.

Rückert C, Szczepanowski R, Albersmeier A, Goesmann A, Fischer N, Steinkämper A, Pühler A, Biener R, Schwartz D, Kalinowski J.

J Biotechnol. 2014 May 20;178:41-2. doi: 10.1016/j.jbiotec.2014.03.011. Epub 2014 Mar 15.

PMID:
24637369
[PubMed - indexed for MEDLINE]
15.

Genome Sequence of the Acute Urethral Catheter Isolate Pseudomonas aeruginosa MH38.

Wibberg D, Tielen P, Blom J, Rosin N, Schobert M, Tüpker R, Schatschneider S, Spilker D, Albersmeier A, Goesmann A, Vorhölter FJ, Pühler A, Jahn D.

Genome Announc. 2014 Mar 13;2(2). pii: e00161-14. doi: 10.1128/genomeA.00161-14.

PMID:
24625869
[PubMed]
Free PMC Article
16.

Transcriptome analyses of CHO cells with the next-generation microarray CHO41K: development and validation by analysing the influence of the growth stimulating substance IGF-1 substitute LongR(3.).

Becker J, Timmermann C, Rupp O, Albaum SP, Brinkrolf K, Goesmann A, Pühler A, Tauch A, Noll T.

J Biotechnol. 2014 May 20;178:23-31. doi: 10.1016/j.jbiotec.2014.02.021. Epub 2014 Mar 5.

PMID:
24613301
[PubMed - indexed for MEDLINE]
17.

Whole-Genome Sequencing of Erwinia amylovora Strains from Mexico Detects Single Nucleotide Polymorphisms in rpsL Conferring Streptomycin Resistance and in the avrRpt2 Effector Altering Host Interactions.

Smits TH, Guerrero-Prieto VM, Hernández-Escarcega G, Blom J, Goesmann A, Rezzonico F, Duffy B, Stockwell VO.

Genome Announc. 2014 Jan 23;2(1). pii: e01229-13. doi: 10.1128/genomeA.01229-13.

PMID:
24459281
[PubMed]
Free PMC Article
18.

Genome Sequence of the Small-Colony Variant Pseudomonas aeruginosa MH27, Isolated from a Chronic Urethral Catheter Infection.

Tielen P, Wibberg D, Blom J, Rosin N, Meyer AK, Bunk B, Schobert M, Tüpker R, Schatschneider S, Rückert C, Albersmeier A, Goesmann A, Vorhölter FJ, Jahn D, Pühler A.

Genome Announc. 2014 Jan 23;2(1). pii: e01174-13. doi: 10.1128/genomeA.01174-13.

PMID:
24459261
[PubMed]
Free PMC Article
19.

Construction of a public CHO cell line transcript database using versatile bioinformatics analysis pipelines.

Rupp O, Becker J, Brinkrolf K, Timmermann C, Borth N, Pühler A, Noll T, Goesmann A.

PLoS One. 2014 Jan 10;9(1):e85568. doi: 10.1371/journal.pone.0085568. eCollection 2014.

PMID:
24427317
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Metabolite profiling on wheat grain to enable a distinction of samples from organic and conventional farming systems.

Bonte A, Neuweger H, Goesmann A, Thonar C, Mäder P, Langenkämper G, Niehaus K.

J Sci Food Agric. 2014 Oct;94(13):2605-12. doi: 10.1002/jsfa.6566. Epub 2014 Feb 13.

PMID:
24425170
[PubMed - in process]

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