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Items: 1 to 20 of 341

1.

Mutation drivers of immunological responses to cancer.

Porta-Pardo E, Godzik A.

Cancer Immunol Res. 2016 Jul 11. pii: canimm.0233.2015. [Epub ahead of print]

PMID:
27401919
2.

Numerous proteins with unique characteristics are degraded by the 26S proteasome following monoubiquitination.

Braten O, Livneh I, Ziv T, Admon A, Kehat I, Caspi LH, Gonen H, Bercovich B, Godzik A, Jahandideh S, Jaroszewski L, Sommer T, Kwon YT, Guharoy M, Tompa P, Ciechanover A.

Proc Natl Acad Sci U S A. 2016 Jul 6. pii: 201608644. [Epub ahead of print]

PMID:
27385826
3.

Revealing aperiodic aspects of solenoid proteins from sequence information.

Hrabe T, Jaroszewski L, Godzik A.

Bioinformatics. 2016 Jun 9. pii: btw319. [Epub ahead of print]

PMID:
27334472
4.

Neutralizing antibody affords comparable protection against vaginal and rectal simian/human immunodeficiency virus challenge in macaques.

Moldt B, Le KM, Carnathan DG, Whitney JB, Schultz N, Lewis MG, Borducchi EN, Smith KM, Mackel JJ, Sweat SL, Hodges AP, Godzik A, Parren PW, Silvestri G, Barouch DH, Burton DR.

AIDS. 2016 Jun 19;30(10):1543-51. doi: 10.1097/QAD.0000000000001102.

PMID:
27243773
5.

NMR in structural genomics to increase structural coverage of the protein universe.

Serrano P, Dutta SK, Proudfoot A, Mohanty B, Susac L, Martin B, Geralt M, Jaroszewski L, Godzik A, Elsliger M, Wilson IA, Wüthrich K.

FEBS J. 2016 May 7. doi: 10.1111/febs.13751. [Epub ahead of print] Review.

PMID:
27154589
6.

A Distinct Type of Pilus from the Human Microbiome.

Xu Q, Shoji M, Shibata S, Naito M, Sato K, Elsliger MA, Grant JC, Axelrod HL, Chiu HJ, Farr CL, Jaroszewski L, Knuth MW, Deacon AM, Godzik A, Lesley SA, Curtis MA, Nakayama K, Wilson IA.

Cell. 2016 Apr 21;165(3):690-703. doi: 10.1016/j.cell.2016.03.016. Epub 2016 Apr 7.

PMID:
27062925
7.

UHM-ULM interactions in the RBM39-U2AF65 splicing-factor complex.

Stepanyuk GA, Serrano P, Peralta E, Farr CL, Axelrod HL, Geralt M, Das D, Chiu HJ, Jaroszewski L, Deacon AM, Lesley SA, Elsliger MA, Godzik A, Wilson IA, Wüthrich K, Salomon DR, Williamson JR.

Acta Crystallogr D Struct Biol. 2016 Apr 1;72(Pt 4):497-511. doi: 10.1107/S2059798316001248. Epub 2016 Mar 24.

PMID:
27050129
8.

Crystal Structure and Activity Studies of the C11 Cysteine Peptidase from Parabacteroides merdae in the Human Gut Microbiome.

McLuskey K, Grewal JS, Das D, Godzik A, Lesley SA, Deacon AM, Coombs GH, Elsliger MA, Wilson IA, Mottram JC.

J Biol Chem. 2016 Apr 29;291(18):9482-91. doi: 10.1074/jbc.M115.706143. Epub 2016 Mar 3.

9.

Broadly Neutralizing Antibody Responses in a Large Longitudinal Sub-Saharan HIV Primary Infection Cohort.

Landais E, Huang X, Havenar-Daughton C, Murrell B, Price MA, Wickramasinghe L, Ramos A, Bian CB, Simek M, Allen S, Karita E, Kilembe W, Lakhi S, Inambao M, Kamali A, Sanders EJ, Anzala O, Edward V, Bekker LG, Tang J, Gilmour J, Kosakovsky-Pond SL, Phung P, Wrin T, Crotty S, Godzik A, Poignard P.

PLoS Pathog. 2016 Jan 14;12(1):e1005369. doi: 10.1371/journal.ppat.1005369. eCollection 2016 Jan.

10.

PROPER: Performance visualization for optimizing and comparing ranking classifiers in MATLAB.

Jahandideh S, Sharifi F, Jaroszewski L, Godzik A.

Source Code Biol Med. 2015 Dec 3;10:15. doi: 10.1186/s13029-015-0047-1. eCollection 2015.

11.

PDBFlex: exploring flexibility in protein structures.

Hrabe T, Li Z, Sedova M, Rotkiewicz P, Jaroszewski L, Godzik A.

Nucleic Acids Res. 2016 Jan 4;44(D1):D423-8. doi: 10.1093/nar/gkv1316. Epub 2015 Nov 28.

12.

Protael: protein data visualization library for the web.

Sedova M, Jaroszewski L, Godzik A.

Bioinformatics. 2016 Feb 15;32(4):602-4. doi: 10.1093/bioinformatics/btv605. Epub 2015 Oct 29.

PMID:
26515826
13.

A Pan-Cancer Catalogue of Cancer Driver Protein Interaction Interfaces.

Porta-Pardo E, Garcia-Alonso L, Hrabe T, Dopazo J, Godzik A.

PLoS Comput Biol. 2015 Oct 20;11(10):e1004518. doi: 10.1371/journal.pcbi.1004518. eCollection 2015 Oct.

14.

Insights into Substrate Specificity of NlpC/P60 Cell Wall Hydrolases Containing Bacterial SH3 Domains.

Xu Q, Mengin-Lecreulx D, Liu XW, Patin D, Farr CL, Grant JC, Chiu HJ, Jaroszewski L, Knuth MW, Godzik A, Lesley SA, Elsliger MA, Deacon AM, Wilson IA.

MBio. 2015 Sep 15;6(5):e02327-14. doi: 10.1128/mBio.02327-14.

15.

Cofactor-induced reversible folding of Flavodoxin-4 from Lactobacillus acidophilus.

Dutta SK, Serrano P, Geralt M, Axelrod HL, Xu Q, Lesley SA, Godzik A, Deacon AM, Elsliger MA, Wilson IA, Wüthrich K.

Protein Sci. 2015 Oct;24(10):1600-8. doi: 10.1002/pro.2743. Epub 2015 Jul 30.

PMID:
26177955
16.

Structure-based discovery of NANOG variant with enhanced properties to promote self-renewal and reprogramming of pluripotent stem cells.

Hayashi Y, Caboni L, Das D, Yumoto F, Clayton T, Deller MC, Nguyen P, Farr CL, Chiu HJ, Miller MD, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Tomoda K, Conklin BR, Wilson IA, Yamanaka S, Fletterick RJ.

Proc Natl Acad Sci U S A. 2015 Apr 14;112(15):4666-71. doi: 10.1073/pnas.1502855112. Epub 2015 Mar 30.

17.

AIDA: ab initio domain assembly for automated multi-domain protein structure prediction and domain-domain interaction prediction.

Xu D, Jaroszewski L, Li Z, Godzik A.

Bioinformatics. 2015 Jul 1;31(13):2098-105. doi: 10.1093/bioinformatics/btv092. Epub 2015 Feb 19.

18.
19.

Analysis of individual protein regions provides novel insights on cancer pharmacogenomics.

Porta Pardo E, Godzik A.

PLoS Comput Biol. 2015 Jan 8;11(1):e1004024. doi: 10.1371/journal.pcbi.1004024. eCollection 2015 Jan.

20.

Structure-guided functional characterization of DUF1460 reveals a highly specific NlpC/P60 amidase family.

Xu Q, Mengin-Lecreulx D, Patin D, Grant JC, Chiu HJ, Jaroszewski L, Knuth MW, Godzik A, Lesley SA, Elsliger MA, Deacon AM, Wilson IA.

Structure. 2014 Dec 2;22(12):1799-809. doi: 10.1016/j.str.2014.09.018. Epub 2014 Nov 20.

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