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Results: 1 to 20 of 55

1.

Distilling structure in Taverna scientific workflows: a refactoring approach.

Cohen-Boulakia S, Chen J, Missier P, Goble C, Williams AR, Froidevaux C.

BMC Bioinformatics. 2014;15 Suppl 1:S12. doi: 10.1186/1471-2105-15-S1-S12. Epub 2014 Jan 10.

PMID:
24564760
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

PAV ontology: provenance, authoring and versioning.

Ciccarese P, Soiland-Reyes S, Belhajjame K, Gray AJ, Goble C, Clark T.

J Biomed Semantics. 2013 Nov 22;4(1):37. doi: 10.1186/2041-1480-4-37.

PMID:
24267948
[PubMed]
Free Article
3.

The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud.

Wolstencroft K, Haines R, Fellows D, Williams A, Withers D, Owen S, Soiland-Reyes S, Dunlop I, Nenadic A, Fisher P, Bhagat J, Belhajjame K, Bacall F, Hardisty A, Nieva de la Hidalga A, Balcazar Vargas MP, Sufi S, Goble C.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W557-61. doi: 10.1093/nar/gkt328. Epub 2013 May 2.

PMID:
23640334
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

The potential hazards of barefoot running: proceed with caution.

Goble C, Wegler J, Forest CP.

JAAPA. 2013 Mar;26(3):49-53. Review. No abstract available.

PMID:
23520806
[PubMed - indexed for MEDLINE]
5.

Opening new gateways to workflows for life scientists.

Karasavvas K, Wolstencroft K, Mina E, Cruickshank D, Williams A, De Roure D, Goble C, Roos M.

Stud Health Technol Inform. 2012;175:131-41.

PMID:
22942004
[PubMed - indexed for MEDLINE]
6.

Open PHACTS: semantic interoperability for drug discovery.

Williams AJ, Harland L, Groth P, Pettifer S, Chichester C, Willighagen EL, Evelo CT, Blomberg N, Ecker G, Goble C, Mons B.

Drug Discov Today. 2012 Nov;17(21-22):1188-98. doi: 10.1016/j.drudis.2012.05.016. Epub 2012 Jun 7. Review.

PMID:
22683805
[PubMed - indexed for MEDLINE]
Free Article
7.

Toward interoperable bioscience data.

Sansone SA, Rocca-Serra P, Field D, Maguire E, Taylor C, Hofmann O, Fang H, Neumann S, Tong W, Amaral-Zettler L, Begley K, Booth T, Bougueleret L, Burns G, Chapman B, Clark T, Coleman LA, Copeland J, Das S, de Daruvar A, de Matos P, Dix I, Edmunds S, Evelo CT, Forster MJ, Gaudet P, Gilbert J, Goble C, Griffin JL, Jacob D, Kleinjans J, Harland L, Haug K, Hermjakob H, Ho Sui SJ, Laederach A, Liang S, Marshall S, McGrath A, Merrill E, Reilly D, Roux M, Shamu CE, Shang CA, Steinbeck C, Trefethen A, Williams-Jones B, Wolstencroft K, Xenarios I, Hide W.

Nat Genet. 2012 Jan 27;44(2):121-6. doi: 10.1038/ng.1054.

PMID:
22281772
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

The SEEK: a platform for sharing data and models in systems biology.

Wolstencroft K, Owen S, du Preez F, Krebs O, Mueller W, Goble C, Snoep JL.

Methods Enzymol. 2011;500:629-55. doi: 10.1016/B978-0-12-385118-5.00029-3.

PMID:
21943917
[PubMed - indexed for MEDLINE]
9.

RightField: embedding ontology annotation in spreadsheets.

Wolstencroft K, Owen S, Horridge M, Krebs O, Mueller W, Snoep JL, du Preez F, Goble C.

Bioinformatics. 2011 Jul 15;27(14):2021-2. doi: 10.1093/bioinformatics/btr312. Epub 2011 May 26.

PMID:
21622664
[PubMed - indexed for MEDLINE]
Free Article
10.

Community-driven computational biology with Debian Linux.

Möller S, Krabbenhöft HN, Tille A, Paleino D, Williams A, Wolstencroft K, Goble C, Holland R, Belhachemi D, Plessy C.

BMC Bioinformatics. 2010 Dec 21;11 Suppl 12:S5. doi: 10.1186/1471-2105-11-S12-S5.

PMID:
21210984
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Towards BioDBcore: a community-defined information specification for biological databases.

Gaudet P, Bairoch A, Field D, Sansone SA, Taylor C, Attwood TK, Bateman A, Blake JA, Bult CJ, Cherry JM, Chisholm RL, Cochrane G, Cook CE, Eppig JT, Galperin MY, Gentleman R, Goble CA, Gojobori T, Hancock JM, Howe DG, Imanishi T, Kelso J, Landsman D, Lewis SE, Karsch Mizrachi I, Orchard S, Ouellette BF, Ranganathan S, Richardson L, Rocca-Serra P, Schofield PN, Smedley D, Southan C, Tan TW, Tatusova T, Whetzel PL, White O, Yamasaki C; BioDBCore Working Group.

Database (Oxford). 2011 Jan 4;2011:baq027. doi: 10.1093/database/baq027. Print 2011.

PMID:
21205783
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Systematic integration of experimental data and models in systems biology.

Li P, Dada JO, Jameson D, Spasic I, Swainston N, Carroll K, Dunn W, Khan F, Malys N, Messiha HL, Simeonidis E, Weichart D, Winder C, Wishart J, Broomhead DS, Goble CA, Gaskell SJ, Kell DB, Westerhoff HV, Mendes P, Paton NW.

BMC Bioinformatics. 2010 Nov 29;11:582. doi: 10.1186/1471-2105-11-582.

PMID:
21114840
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Towards BioDBcore: a community-defined information specification for biological databases.

Gaudet P, Bairoch A, Field D, Sansone SA, Taylor C, Attwood TK, Bateman A, Blake JA, Bult CJ, Cherry JM, Chisholm RL, Cochrane G, Cook CE, Eppig JT, Galperin MY, Gentleman R, Goble CA, Gojobori T, Hancock JM, Howe DG, Imanishi T, Kelso J, Landsman D, Lewis SE, Mizrachi IK, Orchard S, Ouellette BF, Ranganathan S, Richardson L, Rocca-Serra P, Schofield PN, Smedley D, Southan C, Tan TW, Tatusova T, Whetzel PL, White O, Yamasaki C; BioDBCore Working Group.

Nucleic Acids Res. 2011 Jan;39(Database issue):D7-10. doi: 10.1093/nar/gkq1173. Epub 2010 Nov 18.

PMID:
21097465
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

CaGrid Workflow Toolkit: a Taverna based workflow tool for cancer grid.

Tan W, Madduri R, Nenadic A, Soiland-Reyes S, Sulakhe D, Foster I, Goble CA.

BMC Bioinformatics. 2010 Nov 2;11:542. doi: 10.1186/1471-2105-11-542.

PMID:
21044328
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Elements of a computational infrastructure for social simulation.

Birkin M, Procter R, Allan R, Bechhofer S, Buchan I, Goble C, Hudson-Smith A, Lambert P, De Roure D, Sinnott R.

Philos Trans A Math Phys Eng Sci. 2010 Aug 28;368(1925):3797-812. doi: 10.1098/rsta.2010.0145.

PMID:
20643677
[PubMed - indexed for MEDLINE]
16.

A Comparison of Using Taverna and BPEL in Building Scientific Workflows: the case of caGrid.

Tan W, Missier P, Foster I, Madduri R, Goble C.

Concurr Comput. 2010 Jun 25;22(9):1098-1117.

PMID:
20625534
[PubMed]
Free PMC Article
17.

myExperiment: a repository and social network for the sharing of bioinformatics workflows.

Goble CA, Bhagat J, Aleksejevs S, Cruickshank D, Michaelides D, Newman D, Borkum M, Bechhofer S, Roos M, Li P, De Roure D.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W677-82. doi: 10.1093/nar/gkq429. Epub 2010 May 25.

PMID:
20501605
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

BioCatalogue: a universal catalogue of web services for the life sciences.

Bhagat J, Tanoh F, Nzuobontane E, Laurent T, Orlowski J, Roos M, Wolstencroft K, Aleksejevs S, Stevens R, Pettifer S, Lopez R, Goble CA.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W689-94. doi: 10.1093/nar/gkq394. Epub 2010 May 19.

PMID:
20484378
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

XGAP: a uniform and extensible data model and software platform for genotype and phenotype experiments.

Swertz MA, Velde KJ, Tesson BM, Scheltema RA, Arends D, Vera G, Alberts R, Dijkstra M, Schofield P, Schughart K, Hancock JM, Smedley D, Wolstencroft K, Goble C, de Brock EO, Jones AR, Parkinson HE; Coordination of Mouse Informatics Resources (CASIMIR); Genotype-To-Phenotype (GEN2PHEN) Consortiums, Jansen RC.

Genome Biol. 2010;11(3):R27. doi: 10.1186/gb-2010-11-3-r27. Epub 2010 Mar 9.

PMID:
20214801
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Data curation + process curation=data integration + science.

Goble C, Stevens R, Hull D, Wolstencroft K, Lopez R.

Brief Bioinform. 2008 Nov;9(6):506-17. doi: 10.1093/bib/bbn034. Epub 2008 Dec 6.

PMID:
19060304
[PubMed - indexed for MEDLINE]
Free Article

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