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Results: 1 to 20 of 58

1.

A semi-automated workflow for biodiversity data retrieval, cleaning, and quality control.

Mathew C, Güntsch A, Obst M, Vicario S, Haines R, Williams AR, de Jong Y, Goble C.

Biodivers Data J. 2014 Dec 11;(2):e4221. doi: 10.3897/BDJ.2.e4221. eCollection 2014.

2.

BIFI: a Taverna plugin for a simplified and user-friendly workflow platform.

Yildiz A, Dilaveroglu E, Visne I, Günay B, Sefer E, Weinhausel A, Rattay F, Goble CA, Pandey RV, Kriegner A.

BMC Res Notes. 2014 Oct 20;7:740. doi: 10.1186/1756-0500-7-740.

3.

Structuring research methods and data with the research object model: genomics workflows as a case study.

Hettne KM, Dharuri H, Zhao J, Wolstencroft K, Belhajjame K, Soiland-Reyes S, Mina E, Thompson M, Cruickshank D, Verdes-Montenegro L, Garrido J, de Roure D, Corcho O, Klyne G, van Schouwen R, 't Hoen PA, Bechhofer S, Goble C, Roos M.

J Biomed Semantics. 2014 Sep 18;5(1):41. doi: 10.1186/2041-1480-5-41. eCollection 2014.

4.

Distilling structure in Taverna scientific workflows: a refactoring approach.

Cohen-Boulakia S, Chen J, Missier P, Goble C, Williams AR, Froidevaux C.

BMC Bioinformatics. 2014;15 Suppl 1:S12. doi: 10.1186/1471-2105-15-S1-S12. Epub 2014 Jan 10.

5.

PAV ontology: provenance, authoring and versioning.

Ciccarese P, Soiland-Reyes S, Belhajjame K, Gray AJ, Goble C, Clark T.

J Biomed Semantics. 2013 Nov 22;4(1):37. doi: 10.1186/2041-1480-4-37.

6.

The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud.

Wolstencroft K, Haines R, Fellows D, Williams A, Withers D, Owen S, Soiland-Reyes S, Dunlop I, Nenadic A, Fisher P, Bhagat J, Belhajjame K, Bacall F, Hardisty A, Nieva de la Hidalga A, Balcazar Vargas MP, Sufi S, Goble C.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W557-61. doi: 10.1093/nar/gkt328. Epub 2013 May 2.

7.

The potential hazards of barefoot running: proceed with caution.

Goble C, Wegler J, Forest CP.

JAAPA. 2013 Mar;26(3):49-53. Review. No abstract available.

PMID:
23520806
8.

Opening new gateways to workflows for life scientists.

Karasavvas K, Wolstencroft K, Mina E, Cruickshank D, Williams A, De Roure D, Goble C, Roos M.

Stud Health Technol Inform. 2012;175:131-41.

PMID:
22942004
9.

Open PHACTS: semantic interoperability for drug discovery.

Williams AJ, Harland L, Groth P, Pettifer S, Chichester C, Willighagen EL, Evelo CT, Blomberg N, Ecker G, Goble C, Mons B.

Drug Discov Today. 2012 Nov;17(21-22):1188-98. doi: 10.1016/j.drudis.2012.05.016. Epub 2012 Jun 7. Review.

10.

Toward interoperable bioscience data.

Sansone SA, Rocca-Serra P, Field D, Maguire E, Taylor C, Hofmann O, Fang H, Neumann S, Tong W, Amaral-Zettler L, Begley K, Booth T, Bougueleret L, Burns G, Chapman B, Clark T, Coleman LA, Copeland J, Das S, de Daruvar A, de Matos P, Dix I, Edmunds S, Evelo CT, Forster MJ, Gaudet P, Gilbert J, Goble C, Griffin JL, Jacob D, Kleinjans J, Harland L, Haug K, Hermjakob H, Ho Sui SJ, Laederach A, Liang S, Marshall S, McGrath A, Merrill E, Reilly D, Roux M, Shamu CE, Shang CA, Steinbeck C, Trefethen A, Williams-Jones B, Wolstencroft K, Xenarios I, Hide W.

Nat Genet. 2012 Jan 27;44(2):121-6. doi: 10.1038/ng.1054.

11.

The SEEK: a platform for sharing data and models in systems biology.

Wolstencroft K, Owen S, du Preez F, Krebs O, Mueller W, Goble C, Snoep JL.

Methods Enzymol. 2011;500:629-55. doi: 10.1016/B978-0-12-385118-5.00029-3.

PMID:
21943917
12.

RightField: embedding ontology annotation in spreadsheets.

Wolstencroft K, Owen S, Horridge M, Krebs O, Mueller W, Snoep JL, du Preez F, Goble C.

Bioinformatics. 2011 Jul 15;27(14):2021-2. doi: 10.1093/bioinformatics/btr312. Epub 2011 May 26.

13.

Community-driven computational biology with Debian Linux.

Möller S, Krabbenhöft HN, Tille A, Paleino D, Williams A, Wolstencroft K, Goble C, Holland R, Belhachemi D, Plessy C.

BMC Bioinformatics. 2010 Dec 21;11 Suppl 12:S5. doi: 10.1186/1471-2105-11-S12-S5.

14.

Towards BioDBcore: a community-defined information specification for biological databases.

Gaudet P, Bairoch A, Field D, Sansone SA, Taylor C, Attwood TK, Bateman A, Blake JA, Bult CJ, Cherry JM, Chisholm RL, Cochrane G, Cook CE, Eppig JT, Galperin MY, Gentleman R, Goble CA, Gojobori T, Hancock JM, Howe DG, Imanishi T, Kelso J, Landsman D, Lewis SE, Karsch Mizrachi I, Orchard S, Ouellette BF, Ranganathan S, Richardson L, Rocca-Serra P, Schofield PN, Smedley D, Southan C, Tan TW, Tatusova T, Whetzel PL, White O, Yamasaki C; BioDBCore Working Group.

Database (Oxford). 2011 Jan 4;2011:baq027. doi: 10.1093/database/baq027. Print 2011.

15.

Systematic integration of experimental data and models in systems biology.

Li P, Dada JO, Jameson D, Spasic I, Swainston N, Carroll K, Dunn W, Khan F, Malys N, Messiha HL, Simeonidis E, Weichart D, Winder C, Wishart J, Broomhead DS, Goble CA, Gaskell SJ, Kell DB, Westerhoff HV, Mendes P, Paton NW.

BMC Bioinformatics. 2010 Nov 29;11:582. doi: 10.1186/1471-2105-11-582.

16.

Towards BioDBcore: a community-defined information specification for biological databases.

Gaudet P, Bairoch A, Field D, Sansone SA, Taylor C, Attwood TK, Bateman A, Blake JA, Bult CJ, Cherry JM, Chisholm RL, Cochrane G, Cook CE, Eppig JT, Galperin MY, Gentleman R, Goble CA, Gojobori T, Hancock JM, Howe DG, Imanishi T, Kelso J, Landsman D, Lewis SE, Mizrachi IK, Orchard S, Ouellette BF, Ranganathan S, Richardson L, Rocca-Serra P, Schofield PN, Smedley D, Southan C, Tan TW, Tatusova T, Whetzel PL, White O, Yamasaki C; BioDBCore Working Group.

Nucleic Acids Res. 2011 Jan;39(Database issue):D7-10. doi: 10.1093/nar/gkq1173. Epub 2010 Nov 18.

17.

CaGrid Workflow Toolkit: a Taverna based workflow tool for cancer grid.

Tan W, Madduri R, Nenadic A, Soiland-Reyes S, Sulakhe D, Foster I, Goble CA.

BMC Bioinformatics. 2010 Nov 2;11:542. doi: 10.1186/1471-2105-11-542.

18.

Elements of a computational infrastructure for social simulation.

Birkin M, Procter R, Allan R, Bechhofer S, Buchan I, Goble C, Hudson-Smith A, Lambert P, De Roure D, Sinnott R.

Philos Trans A Math Phys Eng Sci. 2010 Aug 28;368(1925):3797-812. doi: 10.1098/rsta.2010.0145.

PMID:
20643677
19.

A Comparison of Using Taverna and BPEL in Building Scientific Workflows: the case of caGrid.

Tan W, Missier P, Foster I, Madduri R, Goble C.

Concurr Comput. 2010 Jun 25;22(9):1098-1117.

20.

myExperiment: a repository and social network for the sharing of bioinformatics workflows.

Goble CA, Bhagat J, Aleksejevs S, Cruickshank D, Michaelides D, Newman D, Borkum M, Bechhofer S, Roos M, Li P, De Roure D.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W677-82. doi: 10.1093/nar/gkq429. Epub 2010 May 25.

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