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Results: 1 to 20 of 25

1.

The complete genome sequence for putative H2 - and S-oxidizer Candidatus Sulfuricurvum sp., assembled de novo from an aquifer-derived metagenome.

Handley KM, Bartels D, O'Loughlin EJ, Williams KH, Trimble WL, Skinner K, Gilbert JA, Desai N, Glass EM, Paczian T, Wilke A, Antonopoulos D, Kemner KM, Meyer F.

Environ Microbiol. 2014 Mar 14. doi: 10.1111/1462-2920.12453. [Epub ahead of print]

PMID:
24628880
[PubMed - as supplied by publisher]
2.

Target selection for structural genomics of infectious diseases.

Yeats C, Dessailly BH, Glass EM, Fremont DH, Orengo CA.

Methods Mol Biol. 2014;1140:35-51. doi: 10.1007/978-1-4939-0354-2_3.

PMID:
24590707
[PubMed - indexed for MEDLINE]
3.

MIxS-BE: a MIxS extension defining a minimum information standard for sequence data from the built environment.

Glass EM, Dribinsky Y, Yilmaz P, Levin H, Van Pelt R, Wendel D, Wilke A, Eisen JA, Huse S, Shipanova A, Sogin M, Stajich J, Knight R, Meyer F, Schriml LM.

ISME J. 2014 Jan;8(1):1-3. doi: 10.1038/ismej.2013.176. Epub 2013 Oct 24. No abstract available.

PMID:
24152717
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

A metagenomics portal for a democratized sequencing world.

Wilke A, Glass EM, Bartels D, Bischof J, Braithwaite D, D'Souza M, Gerlach W, Harrison T, Keegan K, Matthews H, Kottmann R, Paczian T, Tang W, Trimble WL, Yilmaz P, Wilkening J, Desai N, Meyer F.

Methods Enzymol. 2013;531:487-523. doi: 10.1016/B978-0-12-407863-5.00022-8.

PMID:
24060134
[PubMed - indexed for MEDLINE]
5.

The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools.

Wilke A, Harrison T, Wilkening J, Field D, Glass EM, Kyrpides N, Mavrommatis K, Meyer F.

BMC Bioinformatics. 2012 Jun 21;13:141. doi: 10.1186/1471-2105-13-141.

PMID:
22720753
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Identification of chromosomal genes in Yersinia pestis that influence type III secretion and delivery of Yops into target cells.

Houppert AS, Kwiatkowski E, Glass EM, DeBord KL, Merritt PM, Schneewind O, Marketon MM.

PLoS One. 2012;7(3):e34039. doi: 10.1371/journal.pone.0034039. Epub 2012 Mar 30.

PMID:
22479512
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

From genomics to metagenomics.

Desai N, Antonopoulos D, Gilbert JA, Glass EM, Meyer F.

Curr Opin Biotechnol. 2012 Feb;23(1):72-6. doi: 10.1016/j.copbio.2011.12.017. Epub 2012 Jan 5. Review.

PMID:
22227326
[PubMed - indexed for MEDLINE]
8.

Meeting report: the 2 annual argonne soils workshop, argonne national laboratory, chicago illinois, USA, october 6-8, 2010.

O'Brien SL, Glass EM, Brulc JM, Gilbert JA, Antonopoulos DA, Meyer F.

Stand Genomic Sci. 2011 Nov 30;5(2):198-202. doi: 10.4056/sigs.1874546. Epub 2011 Nov 15.

PMID:
22180822
[PubMed]
Free PMC Article
9.

Using the metagenomics RAST server (MG-RAST) for analyzing shotgun metagenomes.

Glass EM, Wilkening J, Wilke A, Antonopoulos D, Meyer F.

Cold Spring Harb Protoc. 2010 Jan;2010(1):pdb.prot5368. doi: 10.1101/pdb.prot5368. No abstract available.

PMID:
20150127
[PubMed - indexed for MEDLINE]
10.

The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes.

Meyer F, Paarmann D, D'Souza M, Olson R, Glass EM, Kubal M, Paczian T, Rodriguez A, Stevens R, Wilke A, Wilkening J, Edwards RA.

BMC Bioinformatics. 2008 Sep 19;9:386. doi: 10.1186/1471-2105-9-386.

PMID:
18803844
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Generating a collection of insertion mutations in the Staphylococcus aureus genome using bursa aurealis.

Bae T, Glass EM, Schneewind O, Missiakas D.

Methods Mol Biol. 2008;416:103-16. doi: 10.1007/978-1-59745-321-9_7.

PMID:
18392963
[PubMed - indexed for MEDLINE]
12.

The RAST Server: rapid annotations using subsystems technology.

Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O.

BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.

PMID:
18261238
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Identification of Francisella tularensis Himar1-based transposon mutants defective for replication in macrophages.

Maier TM, Casey MS, Becker RH, Dorsey CW, Glass EM, Maltsev N, Zahrt TC, Frank DW.

Infect Immun. 2007 Nov;75(11):5376-89. Epub 2007 Aug 6.

PMID:
17682043
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Sentra: a database of signal transduction proteins for comparative genome analysis.

D'Souza M, Glass EM, Syed MH, Zhang Y, Rodriguez A, Maltsev N, Galperin MY.

Nucleic Acids Res. 2007 Jan;35(Database issue):D271-3. Epub 2006 Nov 29.

PMID:
17135204
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Transposon mutagenesis of Bacillus anthracis strain Sterne using Bursa aurealis.

Tam C, Glass EM, Anderson DM, Missiakas D.

Plasmid. 2006 Jul;56(1):74-7. Epub 2006 Mar 13.

PMID:
16530833
[PubMed - indexed for MEDLINE]
16.

Knowledge-based voting algorithm for automated protein functional annotation.

Yu GX, Glass EM, Karonis NT, Maltsev N.

Proteins. 2005 Dec 1;61(4):907-17.

PMID:
16252283
[PubMed - indexed for MEDLINE]
17.

The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes.

Overbeek R, Begley T, Butler RM, Choudhuri JV, Chuang HY, Cohoon M, de Crécy-Lagard V, Diaz N, Disz T, Edwards R, Fonstein M, Frank ED, Gerdes S, Glass EM, Goesmann A, Hanson A, Iwata-Reuyl D, Jensen R, Jamshidi N, Krause L, Kubal M, Larsen N, Linke B, McHardy AC, Meyer F, Neuweger H, Olsen G, Olson R, Osterman A, Portnoy V, Pusch GD, Rodionov DA, Rückert C, Steiner J, Stevens R, Thiele I, Vassieva O, Ye Y, Zagnitko O, Vonstein V.

Nucleic Acids Res. 2005 Oct 7;33(17):5691-702. Print 2005.

PMID:
16214803
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Bacillus anthracis sortase A (SrtA) anchors LPXTG motif-containing surface proteins to the cell wall envelope.

Gaspar AH, Marraffini LA, Glass EM, Debord KL, Ton-That H, Schneewind O.

J Bacteriol. 2005 Jul;187(13):4646-55.

PMID:
15968076
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Molecular mechanisms involved in robustness of yeast central metabolism against null mutations.

Maltsev N, Glass EM, Ovchinnikova G, Gu Z.

J Biochem. 2005 Feb;137(2):177-87.

PMID:
15749832
[PubMed - indexed for MEDLINE]
20.

Staphylococcus aureus virulence genes identified by bursa aurealis mutagenesis and nematode killing.

Bae T, Banger AK, Wallace A, Glass EM, Aslund F, Schneewind O, Missiakas DM.

Proc Natl Acad Sci U S A. 2004 Aug 17;101(33):12312-7. Epub 2004 Aug 10.

PMID:
15304642
[PubMed - indexed for MEDLINE]
Free PMC Article

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