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Results: 1 to 20 of 64

1.

Permutation tests for analyzing cospeciation in multiple phylogenies: applications in tri-trophic ecology.

Mramba LK, Barber S, Hommola K, Dyer LA, Wilson JS, Forister ML, Gilks WR.

Stat Appl Genet Mol Biol. 2013 Dec;12(6):679-701. doi: 10.1515/sagmb-2012-0073.

PMID:
24114867
[PubMed - in process]
2.

Three-point appraisal of genetic linkage maps.

Gilks WR, Welham SJ, Wang J, Clark SJ, King GJ.

Theor Appl Genet. 2012 Nov;125(7):1393-402. doi: 10.1007/s00122-012-1920-9. Epub 2012 Jun 29.

PMID:
22744143
[PubMed - indexed for MEDLINE]
3.

Estimating the incidence of an epidemic when it is first discovered and the design of early detection monitoring.

Parnell S, Gottwald TR, Gilks WR, van den Bosch F.

J Theor Biol. 2012 Jul 21;305:30-6. doi: 10.1016/j.jtbi.2012.03.009. Epub 2012 Mar 29.

PMID:
22480434
[PubMed - indexed for MEDLINE]
4.

Log-linear modelling of protein dipeptide structure reveals interesting patterns of side-chain-backbone interactions.

Hommola K, Gilks WR, Mardia KV.

Stat Appl Genet Mol Biol. 2011;10:Article 8. doi: 10.2202/1544-6115.1579. Epub 2011 Jan 25.

PMID:
21291418
[PubMed - indexed for MEDLINE]
5.

Special issue on statistical bioinformatics.

Gilks WR.

Stat Methods Med Res. 2009 Oct;18(5):435-6. doi: 10.1177/0962280209349831. No abstract available.

PMID:
19783575
[PubMed - indexed for MEDLINE]
6.

A permutation test of host-parasite cospeciation.

Hommola K, Smith JE, Qiu Y, Gilks WR.

Mol Biol Evol. 2009 Jul;26(7):1457-68. doi: 10.1093/molbev/msp062. Epub 2009 Mar 27.

PMID:
19329652
[PubMed - indexed for MEDLINE]
Free Article
7.

Statistical information characterization of conserved non-coding elements in vertebrates.

Abnizova I, Walter K, Te Boekhorst R, Elgar G, Gilks WR.

J Bioinform Comput Biol. 2007 Apr;5(2B):533-47.

PMID:
17636860
[PubMed - indexed for MEDLINE]
8.

CORRIE: enzyme sequence annotation with confidence estimates.

Audit B, Levy ED, Gilks WR, Goldovsky L, Ouzounis CA.

BMC Bioinformatics. 2007 May 22;8 Suppl 4:S3.

PMID:
17570146
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Parallel evolution of conserved non-coding elements that target a common set of developmental regulatory genes from worms to humans.

Vavouri T, Walter K, Gilks WR, Lehner B, Elgar G.

Genome Biol. 2007;8(2):R15.

PMID:
17274809
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Transcription binding site prediction using Markov models.

Abnizova I, Rust AG, Robinson M, Te Boekhorst R, Gilks WR.

J Bioinform Comput Biol. 2006 Apr;4(2):425-41.

PMID:
16819793
[PubMed - indexed for MEDLINE]
11.

Studying statistical properties of regulatory DNA sequences, and their use in predicting regulatory regions in the eukaryotic genomes.

Abnizova I, Gilks WR.

Brief Bioinform. 2006 Mar;7(1):48-54. Review.

PMID:
16761364
[PubMed - indexed for MEDLINE]
Free Article
12.

Predicting the strongest domain-domain contact in interacting protein pairs.

Nye TM, Berzuini C, Gilks WR, Babu MM, Teichmann S.

Stat Appl Genet Mol Biol. 2006;5:Article5. Epub 2006 Feb 24.

PMID:
16646869
[PubMed - indexed for MEDLINE]
13.

Characterisation of conserved non-coding sequences in vertebrate genomes using bioinformatics, statistics and functional studies.

Edwards YJ, Walter K, McEwen G, Vavouri T, Kelly KA, Abnizova I, Woolfe A, Goode DK, Goodson M, North P, Snell P, Callaway H, Smith SF, Gilks WR, Cooke JE, Elgar G.

Comp Biochem Physiol Part D Genomics Proteomics. 2006 Mar;1(1):46-58. doi: 10.1016/j.cbd.2005.03.001. Epub 2005 Sep 15.

PMID:
20483234
[PubMed]
14.

Probabilistic annotation of protein sequences based on functional classifications.

Levy ED, Ouzounis CA, Gilks WR, Audit B.

BMC Bioinformatics. 2005 Dec 14;6:302.

PMID:
16354297
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Defining a genomic radius for long-range enhancer action: duplicated conserved non-coding elements hold the key.

Vavouri T, McEwen GK, Woolfe A, Gilks WR, Elgar G.

Trends Genet. 2006 Jan;22(1):5-10. Epub 2005 Nov 10.

PMID:
16290136
[PubMed - indexed for MEDLINE]
16.

A novel algorithm and web-based tool for comparing two alternative phylogenetic trees.

Nye TM, LiĆ² P, Gilks WR.

Bioinformatics. 2006 Jan 1;22(1):117-9. Epub 2005 Oct 18.

PMID:
16234319
[PubMed - indexed for MEDLINE]
Free Article
17.

Fusing microarray experiments with multivariate regression.

Gilks WR, Tom BD, Brazma A.

Bioinformatics. 2005 Sep 1;21 Suppl 2:ii137-43.

PMID:
16204093
[PubMed - indexed for MEDLINE]
Free Article
18.

Quality determination and the repair of poor quality spots in array experiments.

Tom BD, Gilks WR, Brooke-Powell ET, Ajioka JW.

BMC Bioinformatics. 2005 Sep 26;6:234.

PMID:
16185360
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Striking nucleotide frequency pattern at the borders of highly conserved vertebrate non-coding sequences.

Walter K, Abnizova I, Elgar G, Gilks WR.

Trends Genet. 2005 Aug;21(8):436-40.

PMID:
15979195
[PubMed - indexed for MEDLINE]
20.

Some statistical properties of regulatory DNA sequences, and their use in predicting regulatory regions in the Drosophila genome: the fluffy-tail test.

Abnizova I, te Boekhorst R, Walter K, Gilks WR.

BMC Bioinformatics. 2005 Apr 27;6:109.

PMID:
15857505
[PubMed - indexed for MEDLINE]
Free PMC Article

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