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Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development.

Owens ND, Blitz IL, Lane MA, Patrushev I, Overton JD, Gilchrist MJ, Cho KW, Khokha MK.

Cell Rep. 2016 Jan 26;14(3):632-47. doi: 10.1016/j.celrep.2015.12.050. Epub 2016 Jan 7.


A Database of microRNA Expression Patterns in Xenopus laevis.

Ahmed A, Ward NJ, Moxon S, Lopez-Gomollon S, Viaut C, Tomlinson ML, Patrushev I, Gilchrist MJ, Dalmay T, Dotlic D, Münsterberg AE, Wheeler GN.

PLoS One. 2015 Oct 27;10(10):e0138313. doi: 10.1371/journal.pone.0138313. eCollection 2015.


Antimicrobial stewardship: are we failing in cross-specialty clinical engagement?

Rawson TM, Moore LS, Gilchrist MJ, Holmes AH.

J Antimicrob Chemother. 2016 Feb;71(2):554-9. doi: 10.1093/jac/dkv337. Epub 2015 Oct 23.


The Xenopus ORFeome: A resource that enables functional genomics.

Grant IM, Balcha D, Hao T, Shen Y, Trivedi P, Patrushev I, Fortriede JD, Karpinka JB, Liu L, Zorn AM, Stukenberg PT, Hill DE, Gilchrist MJ.

Dev Biol. 2015 Dec 15;408(2):345-57. doi: 10.1016/j.ydbio.2015.09.004. Epub 2015 Sep 29.


Molecular asymmetry in the 8-cell stage Xenopus tropicalis embryo described by single blastomere transcript sequencing.

De Domenico E, Owens ND, Grant IM, Gomes-Faria R, Gilchrist MJ.

Dev Biol. 2015 Dec 15;408(2):252-68. doi: 10.1016/j.ydbio.2015.06.010. Epub 2015 Jun 19.


A pipeline for the systematic identification of non-redundant full-ORF cDNAs for polymorphic and evolutionary divergent genomes: Application to the ascidian Ciona intestinalis.

Gilchrist MJ, Sobral D, Khoueiry P, Daian F, Laporte B, Patrushev I, Matsumoto J, Dewar K, Hastings KE, Satou Y, Lemaire P, Rothbächer U.

Dev Biol. 2015 Aug 15;404(2):149-63. doi: 10.1016/j.ydbio.2015.05.014. Epub 2015 May 27.


A New Nomenclature of Xenopus laevis Chromosomes Based on the Phylogenetic Relationship to Silurana/Xenopus tropicalis.

Matsuda Y, Uno Y, Kondo M, Gilchrist MJ, Zorn AM, Rokhsar DS, Schmid M, Taira M.

Cytogenet Genome Res. 2015;145(3-4):187-91. doi: 10.1159/000381292. Epub 2015 Apr 8.


Homogeneity of antimicrobial policy, yet heterogeneity of antimicrobial resistance: antimicrobial non-susceptibility among 108,717 clinical isolates from primary, secondary and tertiary care patients in London.

Moore LS, Freeman R, Gilchrist MJ, Gharbi M, Brannigan ET, Donaldson H, Livermore DM, Holmes AH.

J Antimicrob Chemother. 2014 Dec;69(12):3409-22. doi: 10.1093/jac/dku307. Epub 2014 Aug 12.


Activation of the aryl hydrocarbon receptor dampens the severity of inflammatory skin conditions.

Di Meglio P, Duarte JH, Ahlfors H, Owens ND, Li Y, Villanova F, Tosi I, Hirota K, Nestle FO, Mrowietz U, Gilchrist MJ, Stockinger B.

Immunity. 2014 Jun 19;40(6):989-1001. doi: 10.1016/j.immuni.2014.04.019. Epub 2014 Jun 5.


Transcriptional regulation of Caenorhabditis elegans FOXO/DAF-16 modulates lifespan.

Bansal A, Kwon ES, Conte D Jr, Liu H, Gilchrist MJ, MacNeil LT, Tissenbaum HA.

Longev Healthspan. 2014 Apr 23;3:5. doi: 10.1186/2046-2395-3-5. eCollection 2014.


High-resolution analysis of gene activity during the Xenopus mid-blastula transition.

Collart C, Owens ND, Bhaw-Rosun L, Cooper B, De Domenico E, Patrushev I, Sesay AK, Smith JN, Smith JC, Gilchrist MJ.

Development. 2014 May;141(9):1927-39. doi: 10.1242/dev.102012.


In vivo T-box transcription factor profiling reveals joint regulation of embryonic neuromesodermal bipotency.

Gentsch GE, Owens ND, Martin SR, Piccinelli P, Faial T, Trotter MW, Gilchrist MJ, Smith JC.

Cell Rep. 2013 Sep 26;4(6):1185-96. doi: 10.1016/j.celrep.2013.08.012. Epub 2013 Sep 19.


Efficient high-throughput sequencing of a laser microdissected chromosome arm.

Seifertova E, Zimmerman LB, Gilchrist MJ, Macha J, Kubickova S, Cernohorska H, Zarsky V, Owens ND, Sesay AK, Tlapakova T, Krylov V.

BMC Genomics. 2013 May 28;14:357. doi: 10.1186/1471-2164-14-357.


A large pseudoautosomal region on the sex chromosomes of the frog Silurana tropicalis.

Bewick AJ, Chain FJ, Zimmerman LB, Sesay A, Gilchrist MJ, Owens ND, Seifertova E, Krylov V, Macha J, Tlapakova T, Kubickova S, Cernohorska H, Zarsky V, Evans BJ.

Genome Biol Evol. 2013;5(6):1087-98. doi: 10.1093/gbe/evt073.


Exon capture and bulk segregant analysis: rapid discovery of causative mutations using high-throughput sequencing.

del Viso F, Bhattacharya D, Kong Y, Gilchrist MJ, Khokha MK.

BMC Genomics. 2012 Nov 21;13:649. doi: 10.1186/1471-2164-13-649.


Databases of gene expression in Xenopus development.

Gilchrist MJ, Pollet N.

Methods Mol Biol. 2012;917:319-45. doi: 10.1007/978-1-61779-992-1_19.


Rsx is a metatherian RNA with Xist-like properties in X-chromosome inactivation.

Grant J, Mahadevaiah SK, Khil P, Sangrithi MN, Royo H, Duckworth J, McCarrey JR, VandeBerg JL, Renfree MB, Taylor W, Elgar G, Camerini-Otero RD, Gilchrist MJ, Turner JM.

Nature. 2012 Jul 12;487(7406):254-8. doi: 10.1038/nature11171.


Genomic targets of Brachyury (T) in differentiating mouse embryonic stem cells.

Evans AL, Faial T, Gilchrist MJ, Down T, Vallier L, Pedersen RA, Wardle FC, Smith JC.

PLoS One. 2012;7(3):e33346. doi: 10.1371/journal.pone.0033346. Epub 2012 Mar 30.


From expression cloning to gene modeling: the development of Xenopus gene sequence resources.

Gilchrist MJ.

Genesis. 2012 Mar;50(3):143-54. doi: 10.1002/dvg.22008. Epub 2012 Feb 16. Review.


A large scale screen for neural stem cell markers in Xenopus retina.

Parain K, Mazurier N, Bronchain O, Borday C, Cabochette P, Chesneau A, Colozza G, El Yakoubi W, Hamdache J, Locker M, Gilchrist MJ, Pollet N, Perron M.

Dev Neurobiol. 2012 Apr;72(4):491-506. doi: 10.1002/dneu.20973.

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