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Results: 1 to 20 of 66

1.

Pareto optimization in algebraic dynamic programming.

Saule C, Giegerich R.

Algorithms Mol Biol. 2015 Jul 7;10:22. doi: 10.1186/s13015-015-0051-7. eCollection 2015.

2.

Ambivalent covariance models.

Janssen S, Giegerich R.

BMC Bioinformatics. 2015 May 28;16:178. doi: 10.1186/s12859-015-0569-1.

3.

Thermodynamic matchers for the construction of the cuckoo RNA family.

Reinkensmeier J, Giegerich R.

RNA Biol. 2015;12(2):197-207. doi: 10.1080/15476286.2015.1017206.

PMID:
25779873
4.

The RNA shapes studio.

Janssen S, Giegerich R.

Bioinformatics. 2015 Feb 1;31(3):423-5. doi: 10.1093/bioinformatics/btu649. Epub 2014 Oct 1.

5.

Riboregulation in plant-associated α-proteobacteria.

Becker A, Overlöper A, Schlüter JP, Reinkensmeier J, Robledo M, Giegerich R, Narberhaus F, Evguenieva-Hackenberg E.

RNA Biol. 2014;11(5):550-62. Epub 2014 Jul 8. Review.

6.

Genome-wide profiling of Hfq-binding RNAs uncovers extensive post-transcriptional rewiring of major stress response and symbiotic regulons in Sinorhizobium meliloti.

Torres-Quesada O, Reinkensmeier J, Schlüter JP, Robledo M, Peregrina A, Giegerich R, Toro N, Becker A, Jiménez-Zurdo JI.

RNA Biol. 2014;11(5):563-79. Epub 2014 Feb 26.

7.

Introduction to RNA secondary structure comparison.

Schirmer S, Ponty Y, Giegerich R.

Methods Mol Biol. 2014;1097:247-73. doi: 10.1007/978-1-62703-709-9_12. Review.

PMID:
24639163
8.

Abstract shape analysis of RNA.

Janssen S, Giegerich R.

Methods Mol Biol. 2014;1097:215-45. doi: 10.1007/978-1-62703-709-9_11. Review.

PMID:
24639162
9.

Introduction to stochastic context free grammars.

Giegerich R.

Methods Mol Biol. 2014;1097:85-106. doi: 10.1007/978-1-62703-709-9_5. Review.

PMID:
24639156
10.

A silent exonic SNP in kdm3a affects nucleic acids structure but does not regulate experimental autoimmune encephalomyelitis.

Gillett A, Bergman P, Parsa R, Bremges A, Giegerich R, Jagodic M.

PLoS One. 2013 Dec 3;8(12):e81912. doi: 10.1371/journal.pone.0081912. eCollection 2013.

11.

Global mapping of transcription start sites and promoter motifs in the symbiotic α-proteobacterium Sinorhizobium meliloti 1021.

Schlüter JP, Reinkensmeier J, Barnett MJ, Lang C, Krol E, Giegerich R, Long SR, Becker A.

BMC Genomics. 2013 Mar 7;14:156. doi: 10.1186/1471-2164-14-156.

12.

Bellman's GAP--a language and compiler for dynamic programming in sequence analysis.

Sauthoff G, Möhl M, Janssen S, Giegerich R.

Bioinformatics. 2013 Mar 1;29(5):551-60. doi: 10.1093/bioinformatics/btt022. Epub 2013 Jan 25.

13.

Personalized cloud-based bioinformatics services for research and education: use cases and the elasticHPC package.

El-Kalioby M, Abouelhoda M, Krüger J, Giegerich R, Sczyrba A, Wall DP, Tonellato P.

BMC Bioinformatics. 2012;13 Suppl 17:S22. doi: 10.1186/1471-2105-13-S17-S22. Epub 2012 Dec 13.

14.

Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction.

Janssen S, Schudoma C, Steger G, Giegerich R.

BMC Bioinformatics. 2011 Nov 3;12:429. doi: 10.1186/1471-2105-12-429.

15.

Conveyor: a workflow engine for bioinformatic analyses.

Linke B, Giegerich R, Goesmann A.

Bioinformatics. 2011 Apr 1;27(7):903-11. doi: 10.1093/bioinformatics/btr040. Epub 2011 Jan 28.

16.

Semantics and ambiguity of stochastic RNA family models.

Giegerich R, Höner zu Siederdissen C.

IEEE/ACM Trans Comput Biol Bioinform. 2011 Mar-Apr;8(2):499-516. doi: 10.1109/TCBB.2010.12.

PMID:
21233528
17.

Conservation and Occurrence of Trans-Encoded sRNAs in the Rhizobiales.

Reinkensmeier J, Schlüter JP, Giegerich R, Becker A.

Genes (Basel). 2011 Nov 18;2(4):925-56. doi: 10.3390/genes2040925.

18.

WAMI: a web server for the analysis of minisatellite maps.

Abouelhoda M, El-Kalioby M, Giegerich R.

BMC Evol Biol. 2010 Jun 6;10:167. doi: 10.1186/1471-2148-10-167.

19.

Fine-tuning structural RNA alignments in the twilight zone.

Bremges A, Schirmer S, Giegerich R.

BMC Bioinformatics. 2010 Apr 30;11:222. doi: 10.1186/1471-2105-11-222.

20.

A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti.

Schlüter JP, Reinkensmeier J, Daschkey S, Evguenieva-Hackenberg E, Janssen S, Jänicke S, Becker JD, Giegerich R, Becker A.

BMC Genomics. 2010 Apr 17;11:245. doi: 10.1186/1471-2164-11-245.

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