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Results: 1 to 20 of 47

1.

Bacterial protein signals are associated with Crohn's disease.

Juste C, Kreil DP, Beauvallet C, Guillot A, Vaca S, Carapito C, Mondot S, Sykacek P, Sokol H, Blon F, Lepercq P, Levenez F, Valot B, Carré W, Loux V, Pons N, David O, Schaeffer B, Lepage P, Martin P, Monnet V, Seksik P, Beaugerie L, Ehrlich SD, Gibrat JF, Van Dorsselaer A, Doré J.

Gut. 2014 Oct;63(10):1566-77. doi: 10.1136/gutjnl-2012-303786. Epub 2014 Jan 16.

PMID:
24436141
[PubMed - in process]
Free Article
3.

Genome sequence of Staphylococcus equorum subsp. equorum Mu2, isolated from a French smear-ripened cheese.

Irlinger F, Loux V, Bento P, Gibrat JF, Straub C, Bonnarme P, Landaud S, Monnet C.

J Bacteriol. 2012 Sep;194(18):5141-2. doi: 10.1128/JB.01038-12.

PMID:
22933766
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Automatic modeling of mammalian olfactory receptors and docking of odorants.

Launay G, Téletchéa S, Wade F, Pajot-Augy E, Gibrat JF, Sanz G.

Protein Eng Des Sel. 2012 Aug;25(8):377-86. doi: 10.1093/protein/gzs037. Epub 2012 Jun 12.

PMID:
22691703
[PubMed - indexed for MEDLINE]
Free Article
5.

Mapping reads on a genomic sequence: an algorithmic overview and a practical comparative analysis.

Schbath S, Martin V, Zytnicki M, Fayolle J, Loux V, Gibrat JF.

J Comput Biol. 2012 Jun;19(6):796-813. doi: 10.1089/cmb.2012.0022. Epub 2012 Apr 16.

PMID:
22506536
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Genome sequence of the invasive Salmonella enterica subsp. enterica serotype enteritidis strain LA5.

Grépinet O, Rossignol A, Loux V, Chiapello H, Gendrault A, Gibrat JF, Velge P, Virlogeux-Payant I.

J Bacteriol. 2012 May;194(9):2387-8. doi: 10.1128/JB.00256-12.

PMID:
22493198
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Genome sequence of the persistent Salmonella enterica subsp. enterica serotype Senftenberg strain SS209.

Grépinet O, Boumart Z, Virlogeux-Payant I, Loux V, Chiapello H, Gendrault A, Gibrat JF, Chemaly M, Velge P.

J Bacteriol. 2012 May;194(9):2385-6. doi: 10.1128/JB.00255-12.

PMID:
22493197
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

DOMIRE: a web server for identifying structural domains and their neighbors in proteins.

Samson F, Shrager R, Tai CH, Sam V, Lee B, Munson PJ, Gibrat JF, Garnier J.

Bioinformatics. 2012 Apr 1;28(7):1040-1. doi: 10.1093/bioinformatics/bts076. Epub 2012 Feb 15.

PMID:
22345617
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Genome sequence of Corynebacterium casei UCMA 3821, isolated from a smear-ripened cheese.

Monnet C, Loux V, Bento P, Gibrat JF, Straub C, Bonnarme P, Landaud S, Irlinger F.

J Bacteriol. 2012 Feb;194(3):738-9. doi: 10.1128/JB.06496-11.

PMID:
22247534
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Statistical significance of threading scores.

Movaghar AF, Launay G, Schbath S, Gibrat JF, Rodolphe F.

J Comput Biol. 2012 Jan;19(1):13-29. doi: 10.1089/cmb.2011.0236. Epub 2011 Dec 9.

PMID:
22149633
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Complete genome sequence of the pigmented Streptococcus thermophilus strain JIM8232.

Delorme C, Bartholini C, Luraschi M, Pons N, Loux V, Almeida M, Guédon E, Gibrat JF, Renault P.

J Bacteriol. 2011 Oct;193(19):5581-2. doi: 10.1128/JB.05404-11.

PMID:
21914889
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Complete genome sequence of the clinical Streptococcus salivarius strain CCHSS3.

Delorme C, Guédon E, Pons N, Cruaud C, Couloux A, Loux V, Chiapello H, Poyart C, Gautier C, Sanchez N, Almeida M, Kennedy SP, Ehrlich SD, Gibrat JF, Wincker P, Renault P.

J Bacteriol. 2011 Sep;193(18):5041-2. doi: 10.1128/JB.05416-11. Epub 2011 Jul 8.

PMID:
21742894
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Complete genome sequence of the commensal Streptococcus salivarius strain JIM8777.

Guédon E, Delorme C, Pons N, Cruaud C, Loux V, Couloux A, Gautier C, Sanchez N, Layec S, Galleron N, Almeida M, van de Guchte M, Kennedy SP, Ehrlich SD, Gibrat JF, Wincker P, Renault P.

J Bacteriol. 2011 Sep;193(18):5024-5. doi: 10.1128/JB.05390-11. Epub 2011 Jul 8.

PMID:
21742871
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

CompaGB: An open framework for genome browsers comparison.

Lacroix T, Loux V, Gendrault A, Gibrat JF, Chiapello H.

BMC Res Notes. 2011 May 4;4:133. doi: 10.1186/1756-0500-4-133.

PMID:
21542900
[PubMed]
Free PMC Article
15.

Protein domain assignment from the recurrence of locally similar structures.

Tai CH, Sam V, Gibrat JF, Garnier J, Munson PJ, Lee B.

Proteins. 2011 Mar;79(3):853-66. doi: 10.1002/prot.22923. Epub 2010 Dec 22.

PMID:
21287617
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

The arthrobacter arilaitensis Re117 genome sequence reveals its genetic adaptation to the surface of cheese.

Monnet C, Loux V, Gibrat JF, Spinnler E, Barbe V, Vacherie B, Gavory F, Gourbeyre E, Siguier P, Chandler M, Elleuch R, Irlinger F, Vallaeys T.

PLoS One. 2010 Nov 24;5(11):e15489. doi: 10.1371/journal.pone.0015489.

PMID:
21124797
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

The complete genome of Propionibacterium freudenreichii CIRM-BIA1, a hardy actinobacterium with food and probiotic applications.

Falentin H, Deutsch SM, Jan G, Loux V, Thierry A, Parayre S, Maillard MB, Dherbécourt J, Cousin FJ, Jardin J, Siguier P, Couloux A, Barbe V, Vacherie B, Wincker P, Gibrat JF, Gaillardin C, Lortal S.

PLoS One. 2010 Jul 23;5(7):e11748. doi: 10.1371/journal.pone.0011748.

PMID:
20668525
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Complete genome sequence of the probiotic Lactobacillus casei strain BL23.

Mazé A, Boël G, Zúñiga M, Bourand A, Loux V, Yebra MJ, Monedero V, Correia K, Jacques N, Beaufils S, Poncet S, Joyet P, Milohanic E, Casarégola S, Auffray Y, Pérez-Martínez G, Gibrat JF, Zagorec M, Francke C, Hartke A, Deutscher J.

J Bacteriol. 2010 May;192(10):2647-8. doi: 10.1128/JB.00076-10. Epub 2010 Mar 26.

PMID:
20348264
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Amino acid "little Big Bang": representing amino acid substitution matrices as dot products of Euclidian vectors.

Zimmermann K, Gibrat JF.

BMC Bioinformatics. 2010 Jan 4;11:4. doi: 10.1186/1471-2105-11-4.

PMID:
20047649
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Identification of brevibacteriaceae by multilocus sequence typing and comparative genomic hybridization analyses.

Forquin MP, Duvergey H, Proux C, Loux V, Mounier J, Landaud S, Coppée JY, Gibrat JF, Bonnarme P, Martin-Verstraete I, Vallaeys T.

Appl Environ Microbiol. 2009 Oct;75(19):6406-9. doi: 10.1128/AEM.00224-09. Epub 2009 Jul 31.

PMID:
19648361
[PubMed - indexed for MEDLINE]
Free PMC Article

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