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Proposal for a European Public Health Research Infrastructure for Sharing of health and Medical administrative data (PHRIMA).

Burgun A, Oksen DV, Kuchinke W, Prokosch HU, Ganslandt T, Buchan I, van Staa T, Cunningham J, Gjerstorff ML, Dufour JC, Gibrat JF, Nikolski M, Verger P, Cambon-Thomsen A, Masella C, Lettieri E, Bertele P, Salokannel M, Thiebaut R, Persoz C, Chêne G, Ohmann C.

Stud Health Technol Inform. 2015;216:1005.


Overview of a surface-ripened cheese community functioning by meta-omics analyses.

Dugat-Bony E, Straub C, Teissandier A, Onésime D, Loux V, Monnet C, Irlinger F, Landaud S, Leclercq-Perlat MN, Bento P, Fraud S, Gibrat JF, Aubert J, Fer F, Guédon E, Pons N, Kennedy S, Beckerich JM, Swennen D, Bonnarme P.

PLoS One. 2015 Apr 13;10(4):e0124360. doi: 10.1371/journal.pone.0124360. eCollection 2015.


Mammalian olfactory receptors: molecular mechanisms of odorant detection, 3D-modeling, and structure-activity relationships.

Persuy MA, Sanz G, Tromelin A, Thomas-Danguin T, Gibrat JF, Pajot-Augy E.

Prog Mol Biol Transl Sci. 2015;130:1-36. doi: 10.1016/bs.pmbts.2014.11.001. Epub 2014 Dec 18.


Insyght: navigating amongst abundant homologues, syntenies and gene functional annotations in bacteria, it's that symbol!

Lacroix T, Loux V, Gendrault A, Hoebeke M, Gibrat JF.

Nucleic Acids Res. 2014 Dec 1;42(21). doi: 10.1093/nar/gku867. Epub 2014 Sep 23.


Bacterial protein signals are associated with Crohn's disease.

Juste C, Kreil DP, Beauvallet C, Guillot A, Vaca S, Carapito C, Mondot S, Sykacek P, Sokol H, Blon F, Lepercq P, Levenez F, Valot B, Carré W, Loux V, Pons N, David O, Schaeffer B, Lepage P, Martin P, Monnet V, Seksik P, Beaugerie L, Ehrlich SD, Gibrat JF, Van Dorsselaer A, Doré J.

Gut. 2014 Oct;63(10):1566-77. doi: 10.1136/gutjnl-2012-303786. Epub 2014 Jan 16.


Genome sequence of Staphylococcus equorum subsp. equorum Mu2, isolated from a French smear-ripened cheese.

Irlinger F, Loux V, Bento P, Gibrat JF, Straub C, Bonnarme P, Landaud S, Monnet C.

J Bacteriol. 2012 Sep;194(18):5141-2. doi: 10.1128/JB.01038-12.


Automatic modeling of mammalian olfactory receptors and docking of odorants.

Launay G, Téletchéa S, Wade F, Pajot-Augy E, Gibrat JF, Sanz G.

Protein Eng Des Sel. 2012 Aug;25(8):377-86. doi: 10.1093/protein/gzs037. Epub 2012 Jun 12.


Mapping reads on a genomic sequence: an algorithmic overview and a practical comparative analysis.

Schbath S, Martin V, Zytnicki M, Fayolle J, Loux V, Gibrat JF.

J Comput Biol. 2012 Jun;19(6):796-813. doi: 10.1089/cmb.2012.0022. Epub 2012 Apr 16.


Genome sequence of the invasive Salmonella enterica subsp. enterica serotype enteritidis strain LA5.

Grépinet O, Rossignol A, Loux V, Chiapello H, Gendrault A, Gibrat JF, Velge P, Virlogeux-Payant I.

J Bacteriol. 2012 May;194(9):2387-8. doi: 10.1128/JB.00256-12.


Genome sequence of the persistent Salmonella enterica subsp. enterica serotype Senftenberg strain SS209.

Grépinet O, Boumart Z, Virlogeux-Payant I, Loux V, Chiapello H, Gendrault A, Gibrat JF, Chemaly M, Velge P.

J Bacteriol. 2012 May;194(9):2385-6. doi: 10.1128/JB.00255-12.


DOMIRE: a web server for identifying structural domains and their neighbors in proteins.

Samson F, Shrager R, Tai CH, Sam V, Lee B, Munson PJ, Gibrat JF, Garnier J.

Bioinformatics. 2012 Apr 1;28(7):1040-1. doi: 10.1093/bioinformatics/bts076. Epub 2012 Feb 15.


Genome sequence of Corynebacterium casei UCMA 3821, isolated from a smear-ripened cheese.

Monnet C, Loux V, Bento P, Gibrat JF, Straub C, Bonnarme P, Landaud S, Irlinger F.

J Bacteriol. 2012 Feb;194(3):738-9. doi: 10.1128/JB.06496-11.


Statistical significance of threading scores.

Movaghar AF, Launay G, Schbath S, Gibrat JF, Rodolphe F.

J Comput Biol. 2012 Jan;19(1):13-29. doi: 10.1089/cmb.2011.0236. Epub 2011 Dec 9.


Complete genome sequence of the pigmented Streptococcus thermophilus strain JIM8232.

Delorme C, Bartholini C, Luraschi M, Pons N, Loux V, Almeida M, Guédon E, Gibrat JF, Renault P.

J Bacteriol. 2011 Oct;193(19):5581-2. doi: 10.1128/JB.05404-11.


Complete genome sequence of the clinical Streptococcus salivarius strain CCHSS3.

Delorme C, Guédon E, Pons N, Cruaud C, Couloux A, Loux V, Chiapello H, Poyart C, Gautier C, Sanchez N, Almeida M, Kennedy SP, Ehrlich SD, Gibrat JF, Wincker P, Renault P.

J Bacteriol. 2011 Sep;193(18):5041-2. doi: 10.1128/JB.05416-11. Epub 2011 Jul 8.


Complete genome sequence of the commensal Streptococcus salivarius strain JIM8777.

Guédon E, Delorme C, Pons N, Cruaud C, Loux V, Couloux A, Gautier C, Sanchez N, Layec S, Galleron N, Almeida M, van de Guchte M, Kennedy SP, Ehrlich SD, Gibrat JF, Wincker P, Renault P.

J Bacteriol. 2011 Sep;193(18):5024-5. doi: 10.1128/JB.05390-11. Epub 2011 Jul 8.


CompaGB: An open framework for genome browsers comparison.

Lacroix T, Loux V, Gendrault A, Gibrat JF, Chiapello H.

BMC Res Notes. 2011 May 4;4:133. doi: 10.1186/1756-0500-4-133.


Protein domain assignment from the recurrence of locally similar structures.

Tai CH, Sam V, Gibrat JF, Garnier J, Munson PJ, Lee B.

Proteins. 2011 Mar;79(3):853-66. doi: 10.1002/prot.22923. Epub 2010 Dec 22.


The arthrobacter arilaitensis Re117 genome sequence reveals its genetic adaptation to the surface of cheese.

Monnet C, Loux V, Gibrat JF, Spinnler E, Barbe V, Vacherie B, Gavory F, Gourbeyre E, Siguier P, Chandler M, Elleuch R, Irlinger F, Vallaeys T.

PLoS One. 2010 Nov 24;5(11):e15489. doi: 10.1371/journal.pone.0015489.

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