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Items: 1 to 20 of 48

1.

How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use?

Schurch NJ, Schofield P, Gierliński M, Cole C, Sherstnev A, Singh V, Wrobel N, Gharbi K, Simpson GG, Owen-Hughes T, Blaxter M, Barton GJ.

RNA. 2016 Mar 28. [Epub ahead of print]

2.

Development and validation of a mixed-tissue oligonucleotide DNA microarray for Atlantic bluefin tuna, Thunnus thynnus (Linnaeus, 1758).

Trumbić Ž, Bekaert M, Taggart JB, Bron JE, Gharbi K, Mladineo I.

BMC Genomics. 2015 Nov 25;16:1007. doi: 10.1186/s12864-015-2208-7.

3.

Genome wide association and genomic prediction for growth traits in juvenile farmed Atlantic salmon using a high density SNP array.

Tsai HY, Hamilton A, Tinch AE, Guy DR, Gharbi K, Stear MJ, Matika O, Bishop SC, Houston RD.

BMC Genomics. 2015 Nov 18;16:969. doi: 10.1186/s12864-015-2117-9.

4.

A Survey of the ATP-Binding Cassette (ABC) Gene Superfamily in the Salmon Louse (Lepeophtheirus salmonis).

Carmona-Antoñanzas G, Carmichael SN, Heumann J, Taggart JB, Gharbi K, Bron JE, Bekaert M, Sturm A.

PLoS One. 2015 Sep 29;10(9):e0137394. doi: 10.1371/journal.pone.0137394. eCollection 2015.

5.

A new SNP-based vision of the genetics of sex determination in European sea bass (Dicentrarchus labrax).

Palaiokostas C, Bekaert M, Taggart JB, Gharbi K, McAndrew BJ, Chatain B, Penman DJ, Vandeputte M.

Genet Sel Evol. 2015 Sep 4;47:68. doi: 10.1186/s12711-015-0148-y.

6.

The control of sea lice in Atlantic salmon by selective breeding.

Gharbi K, Matthews L, Bron J, Roberts R, Tinch A, Stear M.

J R Soc Interface. 2015 Sep 6;12(110):0574. doi: 10.1098/rsif.2015.0574. Epub 2015 Aug 19.

7.

Statistical models for RNA-seq data derived from a two-condition 48-replicate experiment.

Gierliński M, Cole C, Schofield P, Schurch NJ, Sherstnev A, Singh V, Wrobel N, Gharbi K, Simpson G, Owen-Hughes T, Blaxter M, Barton GJ.

Bioinformatics. 2015 Nov 15;31(22):3625-30. doi: 10.1093/bioinformatics/btv425. Epub 2015 Jul 23.

8.

RAD mapping reveals an evolving, polymorphic and fuzzy boundary of a plant pseudoautosomal region.

Qiu S, Bergero R, Guirao-Rico S, Campos JL, Cezard T, Gharbi K, Charlesworth D.

Mol Ecol. 2016 Jan;25(1):414-30. doi: 10.1111/mec.13297. Epub 2015 Jul 27.

PMID:
26139514
9.

High levels of interspecific gene flow in an endemic cichlid fish adaptive radiation from an extreme lake environment.

Ford AG, Dasmahapatra KK, Rüber L, Gharbi K, Cezard T, Day JJ.

Mol Ecol. 2015 Jul;24(13):3421-40. doi: 10.1111/mec.13247. Epub 2015 Jun 19.

PMID:
25997156
10.

A novel sex-determining QTL in Nile tilapia (Oreochromis niloticus).

Palaiokostas C, Bekaert M, Khan MG, Taggart JB, Gharbi K, McAndrew BJ, Penman DJ.

BMC Genomics. 2015 Mar 11;16:171. doi: 10.1186/s12864-015-1383-x.

11.

Transcriptome analyses of Anguillicola crassus from native and novel hosts.

Heitlinger E, Taraschewski H, Weclawski U, Gharbi K, Blaxter M.

PeerJ. 2014 Nov 27;2:e684. doi: 10.7717/peerj.684. eCollection 2014.

12.

Glucocorticoids promote structural and functional maturation of foetal cardiomyocytes: a role for PGC-1α.

Rog-Zielinska EA, Craig MA, Manning JR, Richardson RV, Gowans GJ, Dunbar DR, Gharbi K, Kenyon CJ, Holmes MC, Hardie DG, Smith GL, Chapman KE.

Cell Death Differ. 2015 Jul;22(7):1106-16. doi: 10.1038/cdd.2014.181. Epub 2014 Oct 31.

13.

Dynamics of copy number variation in host races of the pea aphid.

Duvaux L, Geissmann Q, Gharbi K, Zhou JJ, Ferrari J, Smadja CM, Butlin RK.

Mol Biol Evol. 2015 Jan;32(1):63-80. doi: 10.1093/molbev/msu266. Epub 2014 Sep 18.

14.

poRe: an R package for the visualization and analysis of nanopore sequencing data.

Watson M, Thomson M, Risse J, Talbot R, Santoyo-Lopez J, Gharbi K, Blaxter M.

Bioinformatics. 2015 Jan 1;31(1):114-5. doi: 10.1093/bioinformatics/btu590. Epub 2014 Aug 29.

15.

Rapid convergent evolution in wild crickets.

Pascoal S, Cezard T, Eik-Nes A, Gharbi K, Majewska J, Payne E, Ritchie MG, Zuk M, Bailey NW.

Curr Biol. 2014 Jun 16;24(12):1369-74. doi: 10.1016/j.cub.2014.04.053. Epub 2014 May 29.

16.

Quality control of next-generation sequencing data without a reference.

Trivedi UH, Cézard T, Bridgett S, Montazam A, Nichols J, Blaxter M, Gharbi K.

Front Genet. 2014 May 6;5:111. doi: 10.3389/fgene.2014.00111. eCollection 2014.

17.

Linkage maps of the Atlantic salmon (Salmo salar) genome derived from RAD sequencing.

Gonen S, Lowe NR, Cezard T, Gharbi K, Bishop SC, Houston RD.

BMC Genomics. 2014 Feb 27;15:166. doi: 10.1186/1471-2164-15-166.

18.

Development and validation of a high density SNP genotyping array for Atlantic salmon (Salmo salar).

Houston RD, Taggart JB, Cézard T, Bekaert M, Lowe NR, Downing A, Talbot R, Bishop SC, Archibald AL, Bron JE, Penman DJ, Davassi A, Brew F, Tinch AE, Gharbi K, Hamilton A.

BMC Genomics. 2014 Feb 6;15:90. doi: 10.1186/1471-2164-15-90.

19.

Identification of a sex-linked SNP marker in the salmon louse (Lepeophtheirus salmonis) using RAD sequencing.

Carmichael SN, Bekaert M, Taggart JB, Christie HR, Bassett DI, Bron JE, Skuce PJ, Gharbi K, Skern-Mauritzen R, Sturm A.

PLoS One. 2013 Oct 16;8(10):e77832. doi: 10.1371/journal.pone.0077832. eCollection 2013. Erratum in: PLoS One. 2014;9(1). doi:10.1371/annotation/9a5a8f89-38b6-4ba3-aceb-65aa256f6157.

20.

Mapping the sex determination locus in the Atlantic halibut (Hippoglossus hippoglossus) using RAD sequencing.

Palaiokostas C, Bekaert M, Davie A, Cowan ME, Oral M, Taggart JB, Gharbi K, McAndrew BJ, Penman DJ, Migaud H.

BMC Genomics. 2013 Aug 20;14:566. doi: 10.1186/1471-2164-14-566.

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