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Results: 1 to 20 of 42

1.

Statistical models for RNA-seq data derived from a two-condition 48-replicate experiment.

Gierliński M, Cole C, Schofield P, Schurch NJ, Sherstnev A, Singh V, Wrobel N, Gharbi K, Simpson G, Owen-Hughes T, Blaxter M, Barton GJ.

Bioinformatics. 2015 Jul 23. pii: btv425. [Epub ahead of print]

2.

RAD mapping reveals an evolving, polymorphic and fuzzy boundary of a plant pseudoautosomal region.

Qiu S, Bergero R, Guirao-Rico S, Campos JL, Cezard T, Gharbi K, Charlesworth D.

Mol Ecol. 2015 Jul 2. doi: 10.1111/mec.13297. [Epub ahead of print]

PMID:
26139514
3.

High levels of interspecific gene flow in an endemic cichlid fish adaptive radiation from an extreme lake environment.

Ford AG, Dasmahapatra KK, Rüber L, Gharbi K, Cezard T, Day JJ.

Mol Ecol. 2015 Jul;24(13):3421-3440. doi: 10.1111/mec.13247. Epub 2015 Jun 19.

PMID:
25997156
4.

A novel sex-determining QTL in Nile tilapia (Oreochromis niloticus).

Palaiokostas C, Bekaert M, Khan MG, Taggart JB, Gharbi K, McAndrew BJ, Penman DJ.

BMC Genomics. 2015 Mar 11;16:171. doi: 10.1186/s12864-015-1383-x.

5.

Transcriptome analyses of Anguillicola crassus from native and novel hosts.

Heitlinger E, Taraschewski H, Weclawski U, Gharbi K, Blaxter M.

PeerJ. 2014 Nov 27;2:e684. doi: 10.7717/peerj.684. eCollection 2014.

6.

Glucocorticoids promote structural and functional maturation of foetal cardiomyocytes: a role for PGC-1α.

Rog-Zielinska EA, Craig MA, Manning JR, Richardson RV, Gowans GJ, Dunbar DR, Gharbi K, Kenyon CJ, Holmes MC, Hardie DG, Smith GL, Chapman KE.

Cell Death Differ. 2015 Jul;22(7):1106-16. doi: 10.1038/cdd.2014.181. Epub 2014 Oct 31.

PMID:
25361084
7.

Dynamics of copy number variation in host races of the pea aphid.

Duvaux L, Geissmann Q, Gharbi K, Zhou JJ, Ferrari J, Smadja CM, Butlin RK.

Mol Biol Evol. 2015 Jan;32(1):63-80. doi: 10.1093/molbev/msu266. Epub 2014 Sep 18.

8.

poRe: an R package for the visualization and analysis of nanopore sequencing data.

Watson M, Thomson M, Risse J, Talbot R, Santoyo-Lopez J, Gharbi K, Blaxter M.

Bioinformatics. 2015 Jan 1;31(1):114-5. doi: 10.1093/bioinformatics/btu590. Epub 2014 Aug 29.

9.

Rapid convergent evolution in wild crickets.

Pascoal S, Cezard T, Eik-Nes A, Gharbi K, Majewska J, Payne E, Ritchie MG, Zuk M, Bailey NW.

Curr Biol. 2014 Jun 16;24(12):1369-74. doi: 10.1016/j.cub.2014.04.053. Epub 2014 May 29.

10.

Quality control of next-generation sequencing data without a reference.

Trivedi UH, Cézard T, Bridgett S, Montazam A, Nichols J, Blaxter M, Gharbi K.

Front Genet. 2014 May 6;5:111. doi: 10.3389/fgene.2014.00111. eCollection 2014.

11.

Linkage maps of the Atlantic salmon (Salmo salar) genome derived from RAD sequencing.

Gonen S, Lowe NR, Cezard T, Gharbi K, Bishop SC, Houston RD.

BMC Genomics. 2014 Feb 27;15:166. doi: 10.1186/1471-2164-15-166.

12.

Development and validation of a high density SNP genotyping array for Atlantic salmon (Salmo salar).

Houston RD, Taggart JB, Cézard T, Bekaert M, Lowe NR, Downing A, Talbot R, Bishop SC, Archibald AL, Bron JE, Penman DJ, Davassi A, Brew F, Tinch AE, Gharbi K, Hamilton A.

BMC Genomics. 2014 Feb 6;15:90. doi: 10.1186/1471-2164-15-90.

13.

Identification of a sex-linked SNP marker in the salmon louse (Lepeophtheirus salmonis) using RAD sequencing.

Carmichael SN, Bekaert M, Taggart JB, Christie HR, Bassett DI, Bron JE, Skuce PJ, Gharbi K, Skern-Mauritzen R, Sturm A.

PLoS One. 2013 Oct 16;8(10):e77832. doi: 10.1371/journal.pone.0077832. eCollection 2013. Erratum in: PLoS One. 2014;9(1). doi:10.1371/annotation/9a5a8f89-38b6-4ba3-aceb-65aa256f6157.

14.

Mapping the sex determination locus in the Atlantic halibut (Hippoglossus hippoglossus) using RAD sequencing.

Palaiokostas C, Bekaert M, Davie A, Cowan ME, Oral M, Taggart JB, Gharbi K, McAndrew BJ, Penman DJ, Migaud H.

BMC Genomics. 2013 Aug 20;14:566. doi: 10.1186/1471-2164-14-566.

15.

Mapping and validation of the major sex-determining region in Nile tilapia (Oreochromis niloticus L.) Using RAD sequencing.

Palaiokostas C, Bekaert M, Khan MG, Taggart JB, Gharbi K, McAndrew BJ, Penman DJ.

PLoS One. 2013 Jul 11;8(7):e68389. doi: 10.1371/journal.pone.0068389. Print 2013. Erratum in: PLoS One. 2013;8(9). doi:10.1371/annotation/6320d31e-a818-445a-9c44-77a2ba5fe8e0.

16.

Salmon lice (Lepeophtheirus salmonis) showing varying emamectin benzoate susceptibilities differ in neuronal acetylcholine receptor and GABA-gated chloride channel mRNA expression.

Carmichael SN, Bron JE, Taggart JB, Ireland JH, Bekaert M, Burgess ST, Skuce PJ, Nisbet AJ, Gharbi K, Sturm A.

BMC Genomics. 2013 Jun 18;14:408. doi: 10.1186/1471-2164-14-408.

17.

Estimation of population allele frequencies from next-generation sequencing data: pool-versus individual-based genotyping.

Gautier M, Foucaud J, Gharbi K, Cézard T, Galan M, Loiseau A, Thomson M, Pudlo P, Kerdelhué C, Estoup A.

Mol Ecol. 2013 Jul;22(14):3766-79. doi: 10.1111/mec.12360. Epub 2013 Jun 4.

PMID:
23730833
18.

Sturgeon conservation genomics: SNP discovery and validation using RAD sequencing.

Ogden R, Gharbi K, Mugue N, Martinsohn J, Senn H, Davey JW, Pourkazemi M, McEwing R, Eland C, Vidotto M, Sergeev A, Congiu L.

Mol Ecol. 2013 Jun;22(11):3112-23. doi: 10.1111/mec.12234. Epub 2013 Mar 8.

PMID:
23473098
19.

Reference-free SNP discovery for the Eurasian beaver from restriction site-associated DNA paired-end data.

Senn H, Ogden R, Cezard T, Gharbi K, Iqbal Z, Johnson E, Kamps-Hughes N, Rosell F, McEwing R.

Mol Ecol. 2013 Jun;22(11):3141-50. doi: 10.1111/mec.12242. Epub 2013 Feb 21.

PMID:
23432348
20.

The effect of RAD allele dropout on the estimation of genetic variation within and between populations.

Gautier M, Gharbi K, Cezard T, Foucaud J, Kerdelhué C, Pudlo P, Cornuet JM, Estoup A.

Mol Ecol. 2013 Jun;22(11):3165-78. doi: 10.1111/mec.12089. Epub 2012 Oct 30.

PMID:
23110526
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