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Results: 1 to 20 of 74

1.

Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature.

Haberman Y, Tickle TL, Dexheimer PJ, Kim MO, Tang D, Karns R, Baldassano RN, Noe JD, Rosh J, Markowitz J, Heyman MB, Griffiths AM, Crandall WV, Mack DR, Baker SS, Huttenhower C, Keljo DJ, Hyams JS, Kugathasan S, Walters TD, Aronow B, Xavier RJ, Gevers D, Denson LA.

J Clin Invest. 2014 Aug 1;124(8):3617-33. doi: 10.1172/JCI75436. Epub 2014 Jul 8.

PMID:
25003194
[PubMed - in process]
Free PMC Article
2.

Relating the metatranscriptome and metagenome of the human gut.

Franzosa EA, Morgan XC, Segata N, Waldron L, Reyes J, Earl AM, Giannoukos G, Boylan MR, Ciulla D, Gevers D, Izard J, Garrett WS, Chan AT, Huttenhower C.

Proc Natl Acad Sci U S A. 2014 Jun 3;111(22):E2329-38. doi: 10.1073/pnas.1319284111. Epub 2014 May 19.

PMID:
24843156
[PubMed - indexed for MEDLINE]
3.

Fecal microbiota transplant for relapsing Clostridium difficile infection using a frozen inoculum from unrelated donors: a randomized, open-label, controlled pilot study.

Youngster I, Sauk J, Pindar C, Wilson RG, Kaplan JL, Smith MB, Alm EJ, Gevers D, Russell GH, Hohmann EL.

Clin Infect Dis. 2014 Jun;58(11):1515-22. doi: 10.1093/cid/ciu135. Epub 2014 Apr 23.

PMID:
24762631
[PubMed - in process]
4.

Clarifying concepts of food parenting practices. A Delphi study with an application to snacking behavior.

Gevers DW, Kremers SP, de Vries NK, van Assema P.

Appetite. 2014 Aug;79:51-7. doi: 10.1016/j.appet.2014.04.002. Epub 2014 Apr 13.

PMID:
24732407
[PubMed - in process]
5.

The treatment-naive microbiome in new-onset Crohn's disease.

Gevers D, Kugathasan S, Denson LA, Vázquez-Baeza Y, Van Treuren W, Ren B, Schwager E, Knights D, Song SJ, Yassour M, Morgan XC, Kostic AD, Luo C, González A, McDonald D, Haberman Y, Walters T, Baker S, Rosh J, Stephens M, Heyman M, Markowitz J, Baldassano R, Griffiths A, Sylvester F, Mack D, Kim S, Crandall W, Hyams J, Huttenhower C, Knight R, Xavier RJ.

Cell Host Microbe. 2014 Mar 12;15(3):382-92. doi: 10.1016/j.chom.2014.02.005.

PMID:
24629344
[PubMed - in process]
6.

The intestinal microbiome in type 1 diabetes.

Dunne JL, Triplett EW, Gevers D, Xavier R, Insel R, Danska J, Atkinson MA.

Clin Exp Immunol. 2014 Jul;177(1):30-7. doi: 10.1111/cei.12321. Review.

PMID:
24628412
[PubMed - indexed for MEDLINE]
7.

The microbiome in inflammatory bowel disease: current status and the future ahead.

Kostic AD, Xavier RJ, Gevers D.

Gastroenterology. 2014 May;146(6):1489-99. doi: 10.1053/j.gastro.2014.02.009. Epub 2014 Feb 19. Review.

PMID:
24560869
[PubMed - indexed for MEDLINE]
8.

Emotional and instrumental feeding practices of Dutch mothers regarding foods eaten between main meals.

Raaijmakers LG, Gevers DW, Teuscher D, Kremers SP, van Assema P.

BMC Public Health. 2014 Feb 17;14:171. doi: 10.1186/1471-2458-14-171.

PMID:
24533574
[PubMed - in process]
Free PMC Article
9.

Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission.

Rooks MG, Veiga P, Wardwell-Scott LH, Tickle T, Segata N, Michaud M, Gallini CA, Beal C, van Hylckama-Vlieg JE, Ballal SA, Morgan XC, Glickman JN, Gevers D, Huttenhower C, Garrett WS.

ISME J. 2014 Jul;8(7):1403-17. doi: 10.1038/ismej.2014.3. Epub 2014 Feb 6.

PMID:
24500617
[PubMed - in process]
Free PMC Article
10.

Early microbial and metabolomic signatures predict later onset of necrotizing enterocolitis in preterm infants.

Morrow AL, Lagomarcino AJ, Schibler KR, Taft DH, Yu Z, Wang B, Altaye M, Wagner M, Gevers D, Ward DV, Kennedy MA, Huttenhower C, Newburg DS.

Microbiome. 2013 Apr 16;1(1):13. doi: 10.1186/2049-2618-1-13.

PMID:
24450576
[PubMed]
Free PMC Article
11.

MetaRef: a pan-genomic database for comparative and community microbial genomics.

Huang K, Brady A, Mahurkar A, White O, Gevers D, Huttenhower C, Segata N.

Nucleic Acids Res. 2014 Jan;42(Database issue):D617-24. doi: 10.1093/nar/gkt1078. Epub 2013 Nov 6.

PMID:
24203705
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Gene-targeted metagenomic analysis of glucan-branching enzyme gene profiles among human and animal fecal microbiota.

Lee S, Cantarel B, Henrissat B, Gevers D, Birren BW, Huttenhower C, Ko G.

ISME J. 2014 Mar;8(3):493-503. doi: 10.1038/ismej.2013.167. Epub 2013 Oct 10.

PMID:
24108330
[PubMed - indexed for MEDLINE]
13.

General and food-specific parenting: measures and interplay.

Kremers S, Sleddens E, Gerards S, Gubbels J, Rodenburg G, Gevers D, van Assema P.

Child Obes. 2013 Aug;9 Suppl:S22-31. doi: 10.1089/chi.2013.0026. Review.

PMID:
23944921
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Sequence-based discovery of Bradyrhizobium enterica in cord colitis syndrome.

Bhatt AS, Freeman SS, Herrera AF, Pedamallu CS, Gevers D, Duke F, Jung J, Michaud M, Walker BJ, Young S, Earl AM, Kostic AD, Ojesina AI, Hasserjian R, Ballen KK, Chen YB, Hobbs G, Antin JH, Soiffer RJ, Baden LR, Garrett WS, Hornick JL, Marty FM, Meyerson M.

N Engl J Med. 2013 Aug 8;369(6):517-28. doi: 10.1056/NEJMoa1211115.

PMID:
23924002
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Skin microbiome imbalance in patients with STAT1/STAT3 defects impairs innate host defense responses.

Smeekens SP, Huttenhower C, Riza A, van de Veerdonk FL, Zeeuwen PL, Schalkwijk J, van der Meer JW, Xavier RJ, Netea MG, Gevers D.

J Innate Immun. 2014;6(3):253-62. doi: 10.1159/000351912. Epub 2013 Jun 22.

PMID:
23796786
[PubMed - in process]
16.

Bioinformatics for the Human Microbiome Project.

Gevers D, Pop M, Schloss PD, Huttenhower C.

PLoS Comput Biol. 2012;8(11):e1002779. doi: 10.1371/journal.pcbi.1002779. Epub 2012 Nov 29. No abstract available.

PMID:
23209389
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing.

Bokulich NA, Subramanian S, Faith JJ, Gevers D, Gordon JI, Knight R, Mills DA, Caporaso JG.

Nat Methods. 2013 Jan;10(1):57-9. doi: 10.1038/nmeth.2276. Epub 2012 Dec 2.

PMID:
23202435
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

The Human Microbiome Project strategy for comprehensive sampling of the human microbiome and why it matters.

Aagaard K, Petrosino J, Keitel W, Watson M, Katancik J, Garcia N, Patel S, Cutting M, Madden T, Hamilton H, Harris E, Gevers D, Simone G, McInnes P, Versalovic J.

FASEB J. 2013 Mar;27(3):1012-22. doi: 10.1096/fj.12-220806. Epub 2012 Nov 19.

PMID:
23165986
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment.

Morgan XC, Tickle TL, Sokol H, Gevers D, Devaney KL, Ward DV, Reyes JA, Shah SA, LeLeiko N, Snapper SB, Bousvaros A, Korzenik J, Sands BE, Xavier RJ, Huttenhower C.

Genome Biol. 2012 Apr 16;13(9):R79. doi: 10.1186/gb-2012-13-9-r79.

PMID:
23013615
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

The Human Microbiome Project: a community resource for the healthy human microbiome.

Gevers D, Knight R, Petrosino JF, Huang K, McGuire AL, Birren BW, Nelson KE, White O, Methé BA, Huttenhower C.

PLoS Biol. 2012;10(8):e1001377. doi: 10.1371/journal.pbio.1001377. Epub 2012 Aug 14. No abstract available.

PMID:
22904687
[PubMed - indexed for MEDLINE]
Free PMC Article

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