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Items: 1 to 20 of 34


Immune homeostasis enforced by co-localized effector and regulatory T cells.

Liu Z, Gerner MY, Van Panhuys N, Levine AG, Rudensky AY, Germain RN.

Nature. 2015 Nov 25. doi: 10.1038/nature16169. [Epub ahead of print]


In vivo characterization of the physicochemical properties of polymer-linked TLR agonists that enhance vaccine immunogenicity.

Lynn GM, Laga R, Darrah PA, Ishizuka AS, Balaci AJ, Dulcey AE, Pechar M, Pola R, Gerner MY, Yamamoto A, Buechler CR, Quinn KM, Smelkinson MG, Vanek O, Cawood R, Hills T, Vasalatiy O, Kastenmüller K, Francica JR, Stutts L, Tom JK, Ryu KA, Esser-Kahn AP, Etrych T, Fisher KD, Seymour LW, Seder RA.

Nat Biotechnol. 2015 Nov;33(11):1201-10. doi: 10.1038/nbt.3371. Epub 2015 Oct 26.


Microbiota-Dependent Sequelae of Acute Infection Compromise Tissue-Specific Immunity.

Fonseca DM, Hand TW, Han SJ, Gerner MY, Glatman Zaretsky A, Byrd AL, Harrison OJ, Ortiz AM, Quinones M, Trinchieri G, Brenchley JM, Brodsky IE, Germain RN, Randolph GJ, Belkaid Y.

Cell. 2015 Oct 8;163(2):354-66. doi: 10.1016/j.cell.2015.08.030.


Robust Anti-viral Immunity Requires Multiple Distinct T Cell-Dendritic Cell Interactions.

Eickhoff S, Brewitz A, Gerner MY, Klauschen F, Komander K, Hemmi H, Garbi N, Kaisho T, Germain RN, Kastenmüller W.

Cell. 2015 Sep 10;162(6):1322-37. doi: 10.1016/j.cell.2015.08.004. Epub 2015 Aug 18.


Lymph-node resident CD8α+ dendritic cells capture antigens from migratory malaria sporozoites and induce CD8+ T cell responses.

Radtke AJ, Kastenmüller W, Espinosa DA, Gerner MY, Tse SW, Sinnis P, Germain RN, Zavala FP, Cockburn IA.

PLoS Pathog. 2015 Feb 6;11(2):e1004637. doi: 10.1371/journal.ppat.1004637. eCollection 2015 Feb.


Strategically localized dendritic cells promote rapid T cell responses to lymph-borne particulate antigens.

Gerner MY, Torabi-Parizi P, Germain RN.

Immunity. 2015 Jan 20;42(1):172-85. doi: 10.1016/j.immuni.2014.12.024. Epub 2014 Dec 27.


Pathogen-related differences in the abundance of presented antigen are reflected in CD4+ T cell dynamic behavior and effector function in the lung.

Torabi-Parizi P, Vrisekoop N, Kastenmuller W, Gerner MY, Egen JG, Germain RN.

J Immunol. 2014 Feb 15;192(4):1651-60. doi: 10.4049/jimmunol.1301743. Epub 2014 Jan 15.


Cutting edge: IL-12 and type I IFN differentially program CD8 T cells for programmed death 1 re-expression levels and tumor control.

Gerner MY, Heltemes-Harris LM, Fife BT, Mescher MF.

J Immunol. 2013 Aug 1;191(3):1011-5. doi: 10.4049/jimmunol.1300652. Epub 2013 Jun 26.


CD4 T follicular helper cell dynamics during SIV infection.

Petrovas C, Yamamoto T, Gerner MY, Boswell KL, Wloka K, Smith EC, Ambrozak DR, Sandler NG, Timmer KJ, Sun X, Pan L, Poholek A, Rao SS, Brenchley JM, Alam SM, Tomaras GD, Roederer M, Douek DC, Seder RA, Germain RN, Haddad EK, Koup RA.

J Clin Invest. 2012 Sep;122(9):3281-94. doi: 10.1172/JCI63039. Epub 2012 Aug 27.


Histo-cytometry: a method for highly multiplex quantitative tissue imaging analysis applied to dendritic cell subset microanatomy in lymph nodes.

Gerner MY, Kastenmuller W, Ifrim I, Kabat J, Germain RN.

Immunity. 2012 Aug 24;37(2):364-76. doi: 10.1016/j.immuni.2012.07.011. Epub 2012 Aug 2.


BioContext: an integrated text mining system for large-scale extraction and contextualization of biomolecular events.

Gerner M, Sarafraz F, Bergman CM, Nenadic G.

Bioinformatics. 2012 Aug 15;28(16):2154-61. doi: 10.1093/bioinformatics/bts332. Epub 2012 Jun 17.


Towards semi-automated curation: using text mining to recreate the HIV-1, human protein interaction database.

Jamieson DG, Gerner M, Sarafraz F, Nenadic G, Robertson DL.

Database (Oxford). 2012 Apr 23;2012:bas023. doi: 10.1093/database/bas023. Print 2012.


The gene normalization task in BioCreative III.

Lu Z, Kao HY, Wei CH, Huang M, Liu J, Kuo CJ, Hsu CN, Tsai RT, Dai HJ, Okazaki N, Cho HC, Gerner M, Solt I, Agarwal S, Liu F, Vishnyakova D, Ruch P, Romacker M, Rinaldi F, Bhattacharya S, Srinivasan P, Liu H, Torii M, Matos S, Campos D, Verspoor K, Livingston KM, Wilbur WJ.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S2. doi: 10.1186/1471-2105-12-S8-S2.


pubmed2ensembl: a resource for mining the biological literature on genes.

Baran J, Gerner M, Haeussler M, Nenadic G, Bergman CM.

PLoS One. 2011;6(9):e24716. doi: 10.1371/journal.pone.0024716. Epub 2011 Sep 29.


The GNAT library for local and remote gene mention normalization.

Hakenberg J, Gerner M, Haeussler M, Solt I, Plake C, Schroeder M, Gonzalez G, Nenadic G, Bergman CM.

Bioinformatics. 2011 Oct 1;27(19):2769-71. doi: 10.1093/bioinformatics/btr455. Epub 2011 Aug 3.


Annotating genes and genomes with DNA sequences extracted from biomedical articles.

Haeussler M, Gerner M, Bergman CM.

Bioinformatics. 2011 Apr 1;27(7):980-6. doi: 10.1093/bioinformatics/btr043. Epub 2011 Feb 16.


The in situ dynamics of dendritic cell interactions.

Kastenmüller W, Gerner MY, Germain RN.

Eur J Immunol. 2010 Aug;40(8):2103-6. doi: 10.1002/eji.201040482.


Magnetic fields for fluid motion.

Weston MC, Gerner MD, Fritsch I.

Anal Chem. 2010 May 1;82(9):3411-8. doi: 10.1021/ac901783n.


The retinitis pigmentosa GTPase regulator interacting protein 1 (RPGRIP1) links RPGR to the nephronophthisis protein network.

Gerner M, Haribaskar R, Pütz M, Czerwitzki J, Walz G, Schäfer T.

Kidney Int. 2010 May;77(10):891-6. doi: 10.1038/ki.2010.27. Epub 2010 Mar 3.


LINNAEUS: a species name identification system for biomedical literature.

Gerner M, Nenadic G, Bergman CM.

BMC Bioinformatics. 2010 Feb 11;11:85. doi: 10.1186/1471-2105-11-85.

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