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Landscape genetics, adaptive diversity and population structure in Phaseolus vulgaris.

Rodriguez M, Rau D, Bitocchi E, Bellucci E, Biagetti E, Carboni A, Gepts P, Nanni L, Papa R, Attene G.

New Phytol. 2016 Mar;209(4):1781-94. doi: 10.1111/nph.13713. Epub 2015 Nov 3.


Global agricultural intensification during climate change: a role for genomics.

Abberton M, Batley J, Bentley A, Bryant J, Cai H, Cockram J, Costa de Oliveira A, Cseke LJ, Dempewolf H, De Pace C, Edwards D, Gepts P, Greenland A, Hall AE, Henry R, Hori K, Howe GT, Hughes S, Humphreys M, Lightfoot D, Marshall A, Mayes S, Nguyen HT, Ogbonnaya FC, Ortiz R, Paterson AH, Tuberosa R, Valliyodan B, Varshney RK, Yano M.

Plant Biotechnol J. 2016 Apr;14(4):1095-8. doi: 10.1111/pbi.12467. Epub 2015 Sep 11. Review.


Application of genomics-assisted breeding for generation of climate resilient crops: progress and prospects.

Kole C, Muthamilarasan M, Henry R, Edwards D, Sharma R, Abberton M, Batley J, Bentley A, Blakeney M, Bryant J, Cai H, Cakir M, Cseke LJ, Cockram J, de Oliveira AC, De Pace C, Dempewolf H, Ellison S, Gepts P, Greenland A, Hall A, Hori K, Hughes S, Humphreys MW, Iorizzo M, Ismail AM, Marshall A, Mayes S, Nguyen HT, Ogbonnaya FC, Ortiz R, Paterson AH, Simon PW, Tohme J, Tuberosa R, Valliyodan B, Varshney RK, Wullschleger SD, Yano M, Prasad M.

Front Plant Sci. 2015 Aug 11;6:563. doi: 10.3389/fpls.2015.00563. eCollection 2015. Review.


Genome-wide identification and characterization of aquaporin gene family in common bean (Phaseolus vulgaris L.).

Ariani A, Gepts P.

Mol Genet Genomics. 2015 Oct;290(5):1771-85. doi: 10.1007/s00438-015-1038-2. Epub 2015 Apr 7.


A reference genome for common bean and genome-wide analysis of dual domestications.

Schmutz J, McClean PE, Mamidi S, Wu GA, Cannon SB, Grimwood J, Jenkins J, Shu S, Song Q, Chavarro C, Torres-Torres M, Geffroy V, Moghaddam SM, Gao D, Abernathy B, Barry K, Blair M, Brick MA, Chovatia M, Gepts P, Goodstein DM, Gonzales M, Hellsten U, Hyten DL, Jia G, Kelly JD, Kudrna D, Lee R, Richard MM, Miklas PN, Osorno JM, Rodrigues J, Thareau V, Urrea CA, Wang M, Yu Y, Zhang M, Wing RA, Cregan PB, Rokhsar DS, Jackson SA.

Nat Genet. 2014 Jul;46(7):707-13. doi: 10.1038/ng.3008. Epub 2014 Jun 8.


Current perspectives and the future of domestication studies.

Larson G, Piperno DR, Allaby RG, Purugganan MD, Andersson L, Arroyo-Kalin M, Barton L, Climer Vigueira C, Denham T, Dobney K, Doust AN, Gepts P, Gilbert MT, Gremillion KJ, Lucas L, Lukens L, Marshall FB, Olsen KM, Pires JC, Richerson PJ, Rubio de Casas R, Sanjur OI, Thomas MG, Fuller DQ.

Proc Natl Acad Sci U S A. 2014 Apr 29;111(17):6139-46. doi: 10.1073/pnas.1323964111. Epub 2014 Apr 22.


Multiple lines of evidence for the origin of domesticated chili pepper, Capsicum annuum, in Mexico.

Kraft KH, Brown CH, Nabhan GP, Luedeling E, Luna Ruiz Jde J, Coppens d'Eeckenbrugge G, Hijmans RJ, Gepts P.

Proc Natl Acad Sci U S A. 2014 Apr 29;111(17):6165-70. doi: 10.1073/pnas.1308933111. Epub 2014 Apr 21.


The contribution of genetic and genomic approaches to plant domestication studies.

Gepts P.

Curr Opin Plant Biol. 2014 Apr;18:51-9. doi: 10.1016/j.pbi.2014.02.001. Epub 2014 Mar 15. Review.


Agriculture: Feeding the future.

McCouch S, Baute GJ, Bradeen J, Bramel P, Bretting PK, Buckler E, Burke JM, Charest D, Cloutier S, Cole G, Dempewolf H, Dingkuhn M, Feuillet C, Gepts P, Grattapaglia D, Guarino L, Jackson S, Knapp S, Langridge P, Lawton-Rauh A, Lijua Q, Lusty C, Michael T, Myles S, Naito K, Nelson RL, Pontarollo R, Richards CM, Rieseberg L, Ross-Ibarra J, Rounsley S, Hamilton RS, Schurr U, Stein N, Tomooka N, van der Knaap E, van Tassel D, Toll J, Valls J, Varshney RK, Ward J, Waugh R, Wenzl P, Zamir D.

Nature. 2013 Jul 4;499(7456):23-4. doi: 10.1038/499023a. No abstract available.


Co-segregation analysis and mapping of the anthracnose Co-10 and angular leaf spot Phg-ON disease-resistance genes in the common bean cultivar Ouro Negro.

Gonçalves-Vidigal MC, Cruz AS, Lacanallo GF, Vidigal Filho PS, Sousa LL, Pacheco CM, McClean P, Gepts P, Pastor-Corrales MA.

Theor Appl Genet. 2013 Sep;126(9):2245-55. doi: 10.1007/s00122-013-2131-8. Epub 2013 Jun 13.


Identification and characterization of a homologue to the Arabidopsis INDEHISCENT gene in common Bean.

Gioia T, Logozzo G, Kami J, Spagnoletti Zeuli P, Gepts P.

J Hered. 2013 Mar;104(2):273-86. doi: 10.1093/jhered/ess102. Epub 2012 Dec 12.


Multiple origins of the determinate growth habit in domesticated common bean (Phaseolus vulgaris).

Kwak M, Toro O, Debouck DG, Gepts P.

Ann Bot. 2012 Dec;110(8):1573-80. doi: 10.1093/aob/mcs207. Epub 2012 Sep 27.


Genetic structure and mating system of wild cowpea populations in West Africa.

Kouam EB, Pasquet RS, Campagne P, Tignegre JB, Thoen K, Gaudin R, Ouedraogo JT, Salifu AB, Muluvi GM, Gepts P.

BMC Plant Biol. 2012 Jul 24;12:113. doi: 10.1186/1471-2229-12-113.


The common bean growth habit gene PvTFL1y is a functional homolog of Arabidopsis TFL1.

Repinski SL, Kwak M, Gepts P.

Theor Appl Genet. 2012 May;124(8):1539-47. doi: 10.1007/s00122-012-1808-8. Epub 2012 Feb 14.


Nucleotide diversity of a genomic sequence similar to SHATTERPROOF (PvSHP1) in domesticated and wild common bean (Phaseolus vulgaris L.).

Nanni L, Bitocchi E, Bellucci E, Rossi M, Rau D, Attene G, Gepts P, Papa R.

Theor Appl Genet. 2011 Dec;123(8):1341-57. doi: 10.1007/s00122-011-1671-z. Epub 2011 Aug 10.


Leveraging genomic resources of model species for the assessment of diversity and phylogeny in wild and domesticated lentil.

Alo F, Furman BJ, Akhunov E, Dvorak J, Gepts P.

J Hered. 2011 May-Jun;102(3):315-29. doi: 10.1093/jhered/esr015. Epub 2011 Mar 30.


Different Seed Selection and Conservation Practices for Fresh Market and Dried Chile Farmers in Aguascalientes, Mexico.

Kraft KH, de Jesús Luna-Ruíz J, Gepts P.

Econ Bot. 2010 Dec;64(4):318-328. Epub 2010 Oct 16.


Linkage mapping of the Phg-1 and Co-1(4) genes for resistance to angular leaf spot and anthracnose in the common bean cultivar AND 277.

Gonçalves-Vidigal MC, Cruz AS, Garcia A, Kami J, Vidigal Filho PS, Sousa LL, McClean P, Gepts P, Pastor-Corrales MA.

Theor Appl Genet. 2011 Mar;122(5):893-903. doi: 10.1007/s00122-010-1496-1. Epub 2010 Nov 28.


Influence of cryptic population structure on observed mating patterns in the wild progenitor of maize (Zea mays ssp. parviglumis).

Hufford MB, Gepts P, Ross-Ibarra J.

Mol Ecol. 2011 Jan;20(1):46-55. doi: 10.1111/j.1365-294X.2010.04924.x. Epub 2010 Nov 11.


Microsatellite diversity and genetic structure among common bean (Phaseolus vulgaris L.) landraces in Brazil, a secondary center of diversity.

Burle ML, Fonseca JR, Kami JA, Gepts P.

Theor Appl Genet. 2010 Sep;121(5):801-13. doi: 10.1007/s00122-010-1350-5. Epub 2010 May 26.

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