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Items: 1 to 20 of 148

1.

Physical Principles in the Self-Assembly of a Simple Spherical Virus.

Garmann RF, Comas-Garcia M, Knobler CM, Gelbart WM.

Acc Chem Res. 2016 Jan 19;49(1):48-55. doi: 10.1021/acs.accounts.5b00350. Epub 2015 Dec 10.

PMID:
26653769
2.

Role of RNA Branchedness in the Competition for Viral Capsid Proteins.

Singaram SW, Garmann RF, Knobler CM, Gelbart WM, Ben-Shaul A.

J Phys Chem B. 2015 Nov 5;119(44):13991-4002. doi: 10.1021/acs.jpcb.5b06445. Epub 2015 Oct 19.

PMID:
26435053
3.

Controlling the extent of viral genome release by a combination of osmotic stress and polyvalent cations.

Jin Y, Knobler CM, Gelbart WM.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Aug;92(2):022708. Epub 2015 Aug 13.

PMID:
26382433
4.

Bacteriophage P22 ejects all of its internal proteins before its genome.

Jin Y, Sdao SM, Dover JA, Porcek NB, Knobler CM, Gelbart WM, Parent KN.

Virology. 2015 Nov;485:128-34. doi: 10.1016/j.virol.2015.07.006. Epub 2015 Aug 1.

PMID:
26245366
5.

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data.

Matthews BB, Dos Santos G, Crosby MA, Emmert DB, St Pierre SE, Gramates LS, Zhou P, Schroeder AJ, Falls K, Strelets V, Russo SM, Gelbart WM; FlyBase Consortium.

G3 (Bethesda). 2015 Jun 24;5(8):1721-36. doi: 10.1534/g3.115.018929.

6.

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.

Crosby MA, Gramates LS, Dos Santos G, Matthews BB, St Pierre SE, Zhou P, Schroeder AJ, Falls K, Emmert DB, Russo SM, Gelbart WM; FlyBase Consortium.

G3 (Bethesda). 2015 Jun 24;5(8):1737-49. doi: 10.1534/g3.115.018937.

7.

DNA-peptide complexes: Regulation of interferon production.

Gelbart WM.

Nat Mater. 2015 Jul;14(7):661-2. doi: 10.1038/nmat4332. No abstract available.

PMID:
26099713
8.

A Simple RNA-DNA Scaffold Templates the Assembly of Monofunctional Virus-Like Particles.

Garmann RF, Sportsman R, Beren C, Manoharan VN, Knobler CM, Gelbart WM.

J Am Chem Soc. 2015 Jun 24;137(24):7584-7. doi: 10.1021/jacs.5b03770. Epub 2015 Jun 10.

9.

Visualizing the global secondary structure of a viral RNA genome with cryo-electron microscopy.

Garmann RF, Gopal A, Athavale SS, Knobler CM, Gelbart WM, Harvey SC.

RNA. 2015 May;21(5):877-86. doi: 10.1261/rna.047506.114. Epub 2015 Mar 9.

10.

Viral ssRNAs are indeed compact.

Ben-Shaul A, Gelbart WM.

Biophys J. 2015 Jan 6;108(1):14-6. doi: 10.1016/j.bpj.2014.11.010. No abstract available.

11.

FlyBase: introduction of the Drosophila melanogaster Release 6 reference genome assembly and large-scale migration of genome annotations.

dos Santos G, Schroeder AJ, Goodman JL, Strelets VB, Crosby MA, Thurmond J, Emmert DB, Gelbart WM; FlyBase Consortium.

Nucleic Acids Res. 2015 Jan;43(Database issue):D690-7. doi: 10.1093/nar/gku1099. Epub 2014 Nov 14.

12.

Viral RNAs are unusually compact.

Gopal A, Egecioglu DE, Yoffe AM, Ben-Shaul A, Rao AL, Knobler CM, Gelbart WM.

PLoS One. 2014 Sep 4;9(9):e105875. doi: 10.1371/journal.pone.0105875. eCollection 2014.

13.

Role of electrostatics in the assembly pathway of a single-stranded RNA virus.

Garmann RF, Comas-Garcia M, Koay MS, Cornelissen JJ, Knobler CM, Gelbart WM.

J Virol. 2014 Sep;88(18):10472-9. doi: 10.1128/JVI.01044-14. Epub 2014 Jun 25.

14.

Characterization of Viral Capsid Protein Self-Assembly around Short Single-Stranded RNA.

Comas-Garcia M, Garmann RF, Singaram SW, Ben-Shaul A, Knobler CM, Gelbart WM.

J Phys Chem B. 2014 Jun 30. [Epub ahead of print]

PMID:
24933579
15.

Electrophoretic mobilities of a viral capsid, its capsid protein, and their relation to viral assembly.

Vega-Acosta JR, Cadena-Nava RD, Gelbart WM, Knobler CM, Ruiz-GarcĂ­a J.

J Phys Chem B. 2014 Feb 27;118(8):1984-9. doi: 10.1021/jp407379t. Epub 2014 Feb 14.

PMID:
24467401
16.

The assembly pathway of an icosahedral single-stranded RNA virus depends on the strength of inter-subunit attractions.

Garmann RF, Comas-Garcia M, Gopal A, Knobler CM, Gelbart WM.

J Mol Biol. 2014 Mar 6;426(5):1050-60. doi: 10.1016/j.jmb.2013.10.017. Epub 2013 Oct 19.

PMID:
24148696
17.

Reconstituted plant viral capsids can release genes to mammalian cells.

Azizgolshani O, Garmann RF, Cadena-Nava R, Knobler CM, Gelbart WM.

Virology. 2013 Jun 20;441(1):12-7. doi: 10.1016/j.virol.2013.03.001. Epub 2013 Apr 19.

18.

In vitro quantification of the relative packaging efficiencies of single-stranded RNA molecules by viral capsid protein.

Comas-Garcia M, Cadena-Nava RD, Rao AL, Knobler CM, Gelbart WM.

J Virol. 2012 Nov;86(22):12271-82. doi: 10.1128/JVI.01695-12. Epub 2012 Sep 5.

19.

Automatic categorization of diverse experimental information in the bioscience literature.

Fang R, Schindelman G, Van Auken K, Fernandes J, Chen W, Wang X, Davis P, Tuli MA, Marygold SJ, Millburn G, Matthews B, Zhang H, Brown N, Gelbart WM, Sternberg PW.

BMC Bioinformatics. 2012 Jan 26;13:16. doi: 10.1186/1471-2105-13-16.

20.

Self-assembly of viral capsid protein and RNA molecules of different sizes: requirement for a specific high protein/RNA mass ratio.

Cadena-Nava RD, Comas-Garcia M, Garmann RF, Rao AL, Knobler CM, Gelbart WM.

J Virol. 2012 Mar;86(6):3318-26. doi: 10.1128/JVI.06566-11. Epub 2011 Dec 28.

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