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Results: 1 to 20 of 140

1.

Visualizing the global secondary structure of a viral RNA genome with cryo-electron microscopy.

Garmann RF, Gopal A, Athavale SS, Knobler CM, Gelbart WM, Harvey SC.

RNA. 2015 May;21(5):877-86. doi: 10.1261/rna.047506.114. Epub 2015 Mar 9.

PMID:
25752599
2.

Viral ssRNAs are indeed compact.

Ben-Shaul A, Gelbart WM.

Biophys J. 2015 Jan 6;108(1):14-6. doi: 10.1016/j.bpj.2014.11.010. No abstract available.

PMID:
25564845
3.

FlyBase: introduction of the Drosophila melanogaster Release 6 reference genome assembly and large-scale migration of genome annotations.

dos Santos G, Schroeder AJ, Goodman JL, Strelets VB, Crosby MA, Thurmond J, Emmert DB, Gelbart WM; FlyBase Consortium.

Nucleic Acids Res. 2015 Jan;43(Database issue):D690-7. doi: 10.1093/nar/gku1099. Epub 2014 Nov 14.

4.

Viral RNAs are unusually compact.

Gopal A, Egecioglu DE, Yoffe AM, Ben-Shaul A, Rao AL, Knobler CM, Gelbart WM.

PLoS One. 2014 Sep 4;9(9):e105875. doi: 10.1371/journal.pone.0105875. eCollection 2014.

5.

Role of electrostatics in the assembly pathway of a single-stranded RNA virus.

Garmann RF, Comas-Garcia M, Koay MS, Cornelissen JJ, Knobler CM, Gelbart WM.

J Virol. 2014 Sep;88(18):10472-9. doi: 10.1128/JVI.01044-14. Epub 2014 Jun 25.

6.

Characterization of Viral Capsid Protein Self-Assembly around Short Single-Stranded RNA.

Comas-Garcia M, Garmann RF, Singaram SW, Ben-Shaul A, Knobler CM, Gelbart WM.

J Phys Chem B. 2014 Jun 30. [Epub ahead of print]

PMID:
24933579
7.

Electrophoretic mobilities of a viral capsid, its capsid protein, and their relation to viral assembly.

Vega-Acosta JR, Cadena-Nava RD, Gelbart WM, Knobler CM, Ruiz-García J.

J Phys Chem B. 2014 Feb 27;118(8):1984-9. doi: 10.1021/jp407379t. Epub 2014 Feb 14.

PMID:
24467401
8.

The assembly pathway of an icosahedral single-stranded RNA virus depends on the strength of inter-subunit attractions.

Garmann RF, Comas-Garcia M, Gopal A, Knobler CM, Gelbart WM.

J Mol Biol. 2014 Mar 6;426(5):1050-60. doi: 10.1016/j.jmb.2013.10.017. Epub 2013 Oct 19.

PMID:
24148696
9.

Reconstituted plant viral capsids can release genes to mammalian cells.

Azizgolshani O, Garmann RF, Cadena-Nava R, Knobler CM, Gelbart WM.

Virology. 2013 Jun 20;441(1):12-7. doi: 10.1016/j.virol.2013.03.001. Epub 2013 Apr 19.

10.

In vitro quantification of the relative packaging efficiencies of single-stranded RNA molecules by viral capsid protein.

Comas-Garcia M, Cadena-Nava RD, Rao AL, Knobler CM, Gelbart WM.

J Virol. 2012 Nov;86(22):12271-82. doi: 10.1128/JVI.01695-12. Epub 2012 Sep 5.

11.

Automatic categorization of diverse experimental information in the bioscience literature.

Fang R, Schindelman G, Van Auken K, Fernandes J, Chen W, Wang X, Davis P, Tuli MA, Marygold SJ, Millburn G, Matthews B, Zhang H, Brown N, Gelbart WM, Sternberg PW.

BMC Bioinformatics. 2012 Jan 26;13:16. doi: 10.1186/1471-2105-13-16.

12.

Self-assembly of viral capsid protein and RNA molecules of different sizes: requirement for a specific high protein/RNA mass ratio.

Cadena-Nava RD, Comas-Garcia M, Garmann RF, Rao AL, Knobler CM, Gelbart WM.

J Virol. 2012 Mar;86(6):3318-26. doi: 10.1128/JVI.06566-11. Epub 2011 Dec 28.

13.

Visualizing large RNA molecules in solution.

Gopal A, Zhou ZH, Knobler CM, Gelbart WM.

RNA. 2012 Feb;18(2):284-99. doi: 10.1261/rna.027557.111. Epub 2011 Dec 21.

14.

The size of RNA as an ideal branched polymer.

Fang LT, Gelbart WM, Ben-Shaul A.

J Chem Phys. 2011 Oct 21;135(15):155105. doi: 10.1063/1.3652763.

PMID:
22029339
15.

Rescue of infectious particles from preassembled alphavirus nucleocapsid cores.

Snyder JE, Azizgolshani O, Wu B, He Y, Lee AC, Jose J, Suter DM, Knobler CM, Gelbart WM, Kuhn RJ.

J Virol. 2011 Jun;85(12):5773-81. doi: 10.1128/JVI.00039-11. Epub 2011 Apr 6.

16.

Salt-dependent DNA-DNA spacings in intact bacteriophage λ reflect relative importance of DNA self-repulsion and bending energies.

Qiu X, Rau DC, Parsegian VA, Fang LT, Knobler CM, Gelbart WM.

Phys Rev Lett. 2011 Jan 14;106(2):028102. Epub 2011 Jan 12.

17.

A sequential folding model predicts length-independent secondary structure properties of long ssRNA.

Fang LT, Yoffe AM, Gelbart WM, Ben-Shaul A.

J Phys Chem B. 2011 Mar 31;115(12):3193-9. doi: 10.1021/jp110680e. Epub 2011 Mar 3.

PMID:
21370842
18.

Exploiting fluorescent polymers to probe the self-assembly of virus-like particles.

Cadena-Nava RD, Hu Y, Garmann RF, Ng B, Zelikin AN, Knobler CM, Gelbart WM.

J Phys Chem B. 2011 Mar 17;115(10):2386-91. doi: 10.1021/jp1094118. Epub 2011 Feb 22.

PMID:
21338131
19.

The ends of a large RNA molecule are necessarily close.

Yoffe AM, Prinsen P, Gelbart WM, Ben-Shaul A.

Nucleic Acids Res. 2011 Jan;39(1):292-9. doi: 10.1093/nar/gkq642. Epub 2010 Sep 1.

20.

Multishell structures of virus coat proteins.

Prinsen P, van der Schoot P, Gelbart WM, Knobler CM.

J Phys Chem B. 2010 Apr 29;114(16):5522-33. doi: 10.1021/jp911040z.

PMID:
20369869
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