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Results: 1 to 20 of 69

1.

Genome-wide Translational Changes Induced by the Prion [PSI+].

Baudin-Baillieu A, Legendre R, Kuchly C, Hatin I, Demais S, Mestdagh C, Gautheret D, Namy O.

Cell Rep. 2014 Jul 15. pii: S2211-1247(14)00520-8. doi: 10.1016/j.celrep.2014.06.036. [Epub ahead of print]

PMID:
25043188
[PubMed - as supplied by publisher]
Free Article
2.

Identification of large intergenic non-coding RNAs in bovine muscle using next-generation transcriptomic sequencing.

Billerey C, Boussaha M, Esquerré D, Rebours E, Djari A, Meersseman C, Klopp C, Gautheret D, Rocha D.

BMC Genomics. 2014 Jun 19;15:499. doi: 10.1186/1471-2164-15-499.

PMID:
24948191
[PubMed - in process]
Free PMC Article
3.

Acquired Initiating Mutations in Early Hematopoietic Cells of CLL Patients.

Damm F, Mylonas E, Cosson A, Yoshida K, Della Valle V, Mouly E, Diop M, Scourzic L, Shiraishi Y, Chiba K, Tanaka H, Miyano S, Kikushige Y, Davi F, Lambert J, Gautheret D, Merle-Béral H, Sutton L, Dessen P, Solary E, Akashi K, Vainchenker W, Mercher T, Droin N, Ogawa S, Nguyen-Khac F, Bernard OA.

Cancer Discov. 2014 Jun 11. [Epub ahead of print]

PMID:
24920063
[PubMed - as supplied by publisher]
4.

RNA at 92 °C: the non-coding transcriptome of the hyperthermophilic archaeon Pyrococcus abyssi.

Toffano-Nioche C, Ott A, Crozat E, Nguyen AN, Zytnicki M, Leclerc F, Forterre P, Bouloc P, Gautheret D.

RNA Biol. 2013 Jul;10(7):1211-20. doi: 10.4161/rna.25567. Epub 2013 Jul 2.

PMID:
23884177
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Detection of non-coding RNA in bacteria and archaea using the DETR'PROK Galaxy pipeline.

Toffano-Nioche C, Luo Y, Kuchly C, Wallon C, Steinbach D, Zytnicki M, Jacq A, Gautheret D.

Methods. 2013 Sep 1;63(1):60-5. doi: 10.1016/j.ymeth.2013.06.003. Epub 2013 Jun 25.

PMID:
23806640
[PubMed - indexed for MEDLINE]
Free Article
6.

A universal RNA structural motif docking the elbow of tRNA in the ribosome, RNAse P and T-box leaders.

Lehmann J, Jossinet F, Gautheret D.

Nucleic Acids Res. 2013 May 1;41(10):5494-502. doi: 10.1093/nar/gkt219. Epub 2013 Apr 10.

PMID:
23580544
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Zinc-mediated RNA fragmentation allows robust transcript reassembly upon whole transcriptome RNA-Seq.

Wery M, Descrimes M, Thermes C, Gautheret D, Morillon A.

Methods. 2013 Sep 1;63(1):25-31. doi: 10.1016/j.ymeth.2013.03.009. Epub 2013 Mar 21.

PMID:
23523657
[PubMed - indexed for MEDLINE]
8.

Transcriptomic profiling of the oyster pathogen Vibrio splendidus opens a window on the evolutionary dynamics of the small RNA repertoire in the Vibrio genus.

Toffano-Nioche C, Nguyen AN, Kuchly C, Ott A, Gautheret D, Bouloc P, Jacq A.

RNA. 2012 Dec;18(12):2201-19. doi: 10.1261/rna.033324.112. Epub 2012 Oct 24.

PMID:
23097430
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Characterization of novel genomic alterations and therapeutic approaches using acute megakaryoblastic leukemia xenograft models.

Thiollier C, Lopez CK, Gerby B, Ignacimouttou C, Poglio S, Duffourd Y, Guégan J, Rivera-Munoz P, Bluteau O, Mabialah V, Diop M, Wen Q, Petit A, Bauchet AL, Reinhardt D, Bornhauser B, Gautheret D, Lecluse Y, Landman-Parker J, Radford I, Vainchenker W, Dastugue N, de Botton S, Dessen P, Bourquin JP, Crispino JD, Ballerini P, Bernard OA, Pflumio F, Mercher T.

J Exp Med. 2012 Oct 22;209(11):2017-31. doi: 10.1084/jem.20121343. Epub 2012 Oct 8.

PMID:
23045605
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

BRASERO: A Resource for Benchmarking RNA Secondary Structure Comparison Algorithms.

Allali J, Saule C, Chauve C, d'Aubenton-Carafa Y, Denise A, Drevet C, Ferraro P, Gautheret D, Herrbach C, Leclerc F, de Monte A, Ouangraoua A, Sagot MF, Termier M, Thermes C, Touzet H.

Adv Bioinformatics. 2012;2012:893048. doi: 10.1155/2012/893048. Epub 2012 May 23.

PMID:
22675348
[PubMed]
Free PMC Article
11.

NAPP: the Nucleic Acid Phylogenetic Profile Database.

Ott A, Idali A, Marchais A, Gautheret D.

Nucleic Acids Res. 2012 Jan;40(Database issue):D205-9. doi: 10.1093/nar/gkr807. Epub 2011 Oct 8.

PMID:
21984475
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

RNAspace.org: An integrated environment for the prediction, annotation, and analysis of ncRNA.

Cros MJ, de Monte A, Mariette J, Bardou P, Grenier-Boley B, Gautheret D, Touzet H, Gaspin C.

RNA. 2011 Nov;17(11):1947-56. doi: 10.1261/rna.2844911. Epub 2011 Sep 23.

PMID:
21947200
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

RNAcentral: A vision for an international database of RNA sequences.

Bateman A, Agrawal S, Birney E, Bruford EA, Bujnicki JM, Cochrane G, Cole JR, Dinger ME, Enright AJ, Gardner PP, Gautheret D, Griffiths-Jones S, Harrow J, Herrero J, Holmes IH, Huang HD, Kelly KA, Kersey P, Kozomara A, Lowe TM, Marz M, Moxon S, Pruitt KD, Samuelsson T, Stadler PF, Vilella AJ, Vogel JH, Williams KP, Wright MW, Zwieb C.

RNA. 2011 Nov;17(11):1941-6. doi: 10.1261/rna.2750811. Epub 2011 Sep 22.

PMID:
21940779
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

CsfG, a sporulation-specific, small non-coding RNA highly conserved in endospore formers.

Marchais A, Duperrier S, Durand S, Gautheret D, Stragier P.

RNA Biol. 2011 May-Jun;8(3):358-64. Epub 2011 May 1.

PMID:
21532344
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus.

Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D.

RNA Biol. 2011 May-Jun;8(3):538-47. Epub 2011 May 1.

PMID:
21525786
[PubMed - indexed for MEDLINE]
Free Article
16.

ARNold: a web tool for the prediction of Rho-independent transcription terminators.

Naville M, Ghuillot-Gaudeffroy A, Marchais A, Gautheret D.

RNA Biol. 2011 Jan-Feb;8(1):11-3. Epub 2011 Jan 1.

PMID:
21282983
[PubMed - indexed for MEDLINE]
Free Article
17.

Plant noncoding RNA gene discovery by "single-genome comparative genomics".

Chen CJ, Zhou H, Chen YQ, Qu LH, Gautheret D.

RNA. 2011 Mar;17(3):390-400. doi: 10.1261/rna.2426511. Epub 2011 Jan 10.

PMID:
21220549
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Premature terminator analysis sheds light on a hidden world of bacterial transcriptional attenuation.

Naville M, Gautheret D.

Genome Biol. 2010;11(9):R97. doi: 10.1186/gb-2010-11-9-r97. Epub 2010 Sep 29.

PMID:
20920266
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Experimental discovery of small RNAs in Staphylococcus aureus reveals a riboregulator of central metabolism.

Bohn C, Rigoulay C, Chabelskaya S, Sharma CM, Marchais A, Skorski P, Borezée-Durant E, Barbet R, Jacquet E, Jacq A, Gautheret D, Felden B, Vogel J, Bouloc P.

Nucleic Acids Res. 2010 Oct;38(19):6620-36. doi: 10.1093/nar/gkq462. Epub 2010 May 28.

PMID:
20511587
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Transcription attenuation in bacteria: theme and variations.

Naville M, Gautheret D.

Brief Funct Genomics. 2010 Mar;9(2):178-89. Review.

PMID:
20352660
[PubMed - indexed for MEDLINE]

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