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Results: 1 to 20 of 72

1.

Revisiting the structure/function relationships of H/ACA(-like) RNAs: a unified model for Euryarchaea and Crenarchaea.

Toffano-Nioche C, Gautheret D, Leclerc F.

Nucleic Acids Res. 2015 Aug 3. pii: gkv756. [Epub ahead of print]

2.

An assessment of bacterial small RNA target prediction programs.

Pain A, Ott A, Amine H, Rochat T, Bouloc P, Gautheret D.

RNA Biol. 2015;12(5):509-13. doi: 10.1080/15476286.2015.1020269.

PMID:
25760244
3.

In plants, decapping prevents RDR6-dependent production of small interfering RNAs from endogenous mRNAs.

Martínez de Alba AE, Moreno AB, Gabriel M, Mallory AC, Christ A, Bounon R, Balzergue S, Aubourg S, Gautheret D, Crespi MD, Vaucheret H, Maizel A.

Nucleic Acids Res. 2015 Mar 11;43(5):2902-13. doi: 10.1093/nar/gkv119. Epub 2015 Feb 18.

4.

Genome-wide translational changes induced by the prion [PSI+].

Baudin-Baillieu A, Legendre R, Kuchly C, Hatin I, Demais S, Mestdagh C, Gautheret D, Namy O.

Cell Rep. 2014 Jul 24;8(2):439-48. doi: 10.1016/j.celrep.2014.06.036. Epub 2014 Jul 17.

5.

Identification of large intergenic non-coding RNAs in bovine muscle using next-generation transcriptomic sequencing.

Billerey C, Boussaha M, Esquerré D, Rebours E, Djari A, Meersseman C, Klopp C, Gautheret D, Rocha D.

BMC Genomics. 2014 Jun 19;15:499. doi: 10.1186/1471-2164-15-499.

6.

Acquired initiating mutations in early hematopoietic cells of CLL patients.

Damm F, Mylonas E, Cosson A, Yoshida K, Della Valle V, Mouly E, Diop M, Scourzic L, Shiraishi Y, Chiba K, Tanaka H, Miyano S, Kikushige Y, Davi F, Lambert J, Gautheret D, Merle-Béral H, Sutton L, Dessen P, Solary E, Akashi K, Vainchenker W, Mercher T, Droin N, Ogawa S, Nguyen-Khac F, Bernard OA.

Cancer Discov. 2014 Sep;4(9):1088-101. doi: 10.1158/2159-8290.CD-14-0104. Epub 2014 Jun 11.

7.

RNA at 92 °C: the non-coding transcriptome of the hyperthermophilic archaeon Pyrococcus abyssi.

Toffano-Nioche C, Ott A, Crozat E, Nguyen AN, Zytnicki M, Leclerc F, Forterre P, Bouloc P, Gautheret D.

RNA Biol. 2013 Jul;10(7):1211-20. doi: 10.4161/rna.25567. Epub 2013 Jul 2.

8.

Detection of non-coding RNA in bacteria and archaea using the DETR'PROK Galaxy pipeline.

Toffano-Nioche C, Luo Y, Kuchly C, Wallon C, Steinbach D, Zytnicki M, Jacq A, Gautheret D.

Methods. 2013 Sep 1;63(1):60-5. doi: 10.1016/j.ymeth.2013.06.003. Epub 2013 Jun 25.

9.

A universal RNA structural motif docking the elbow of tRNA in the ribosome, RNAse P and T-box leaders.

Lehmann J, Jossinet F, Gautheret D.

Nucleic Acids Res. 2013 May 1;41(10):5494-502. doi: 10.1093/nar/gkt219. Epub 2013 Apr 10.

10.

Zinc-mediated RNA fragmentation allows robust transcript reassembly upon whole transcriptome RNA-Seq.

Wery M, Descrimes M, Thermes C, Gautheret D, Morillon A.

Methods. 2013 Sep 1;63(1):25-31. doi: 10.1016/j.ymeth.2013.03.009. Epub 2013 Mar 21.

PMID:
23523657
11.

Transcriptomic profiling of the oyster pathogen Vibrio splendidus opens a window on the evolutionary dynamics of the small RNA repertoire in the Vibrio genus.

Toffano-Nioche C, Nguyen AN, Kuchly C, Ott A, Gautheret D, Bouloc P, Jacq A.

RNA. 2012 Dec;18(12):2201-19. doi: 10.1261/rna.033324.112. Epub 2012 Oct 24.

12.

Characterization of novel genomic alterations and therapeutic approaches using acute megakaryoblastic leukemia xenograft models.

Thiollier C, Lopez CK, Gerby B, Ignacimouttou C, Poglio S, Duffourd Y, Guégan J, Rivera-Munoz P, Bluteau O, Mabialah V, Diop M, Wen Q, Petit A, Bauchet AL, Reinhardt D, Bornhauser B, Gautheret D, Lecluse Y, Landman-Parker J, Radford I, Vainchenker W, Dastugue N, de Botton S, Dessen P, Bourquin JP, Crispino JD, Ballerini P, Bernard OA, Pflumio F, Mercher T.

J Exp Med. 2012 Oct 22;209(11):2017-31. doi: 10.1084/jem.20121343. Epub 2012 Oct 8.

13.

BRASERO: A Resource for Benchmarking RNA Secondary Structure Comparison Algorithms.

Allali J, Saule C, Chauve C, d'Aubenton-Carafa Y, Denise A, Drevet C, Ferraro P, Gautheret D, Herrbach C, Leclerc F, de Monte A, Ouangraoua A, Sagot MF, Termier M, Thermes C, Touzet H.

Adv Bioinformatics. 2012;2012:893048. doi: 10.1155/2012/893048. Epub 2012 May 23.

14.

NAPP: the Nucleic Acid Phylogenetic Profile Database.

Ott A, Idali A, Marchais A, Gautheret D.

Nucleic Acids Res. 2012 Jan;40(Database issue):D205-9. doi: 10.1093/nar/gkr807. Epub 2011 Oct 8.

15.

RNAspace.org: An integrated environment for the prediction, annotation, and analysis of ncRNA.

Cros MJ, de Monte A, Mariette J, Bardou P, Grenier-Boley B, Gautheret D, Touzet H, Gaspin C.

RNA. 2011 Nov;17(11):1947-56. doi: 10.1261/rna.2844911. Epub 2011 Sep 23.

16.

RNAcentral: A vision for an international database of RNA sequences.

Bateman A, Agrawal S, Birney E, Bruford EA, Bujnicki JM, Cochrane G, Cole JR, Dinger ME, Enright AJ, Gardner PP, Gautheret D, Griffiths-Jones S, Harrow J, Herrero J, Holmes IH, Huang HD, Kelly KA, Kersey P, Kozomara A, Lowe TM, Marz M, Moxon S, Pruitt KD, Samuelsson T, Stadler PF, Vilella AJ, Vogel JH, Williams KP, Wright MW, Zwieb C.

RNA. 2011 Nov;17(11):1941-6. doi: 10.1261/rna.2750811. Epub 2011 Sep 22.

17.

CsfG, a sporulation-specific, small non-coding RNA highly conserved in endospore formers.

Marchais A, Duperrier S, Durand S, Gautheret D, Stragier P.

RNA Biol. 2011 May-Jun;8(3):358-64. Epub 2011 May 1.

18.

Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus.

Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D.

RNA Biol. 2011 May-Jun;8(3):538-47. Epub 2011 May 1.

PMID:
21525786
19.

ARNold: a web tool for the prediction of Rho-independent transcription terminators.

Naville M, Ghuillot-Gaudeffroy A, Marchais A, Gautheret D.

RNA Biol. 2011 Jan-Feb;8(1):11-3. Epub 2011 Jan 1.

PMID:
21282983
20.

Plant noncoding RNA gene discovery by "single-genome comparative genomics".

Chen CJ, Zhou H, Chen YQ, Qu LH, Gautheret D.

RNA. 2011 Mar;17(3):390-400. doi: 10.1261/rna.2426511. Epub 2011 Jan 10.

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